Wall clock time and date at job start Tue Mar 31 2020 23:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00206 * 2 1 4 4 H 1.48501 * 109.47101 * 240.00035 * 3 2 1 5 5 H 1.48493 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46969 * 120.00078 * 3 2 1 7 7 C 1.37881 * 119.99498 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99510 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47297 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47297 * 179.97438 * 10 9 7 12 12 C 1.34782 * 119.99762 * 180.02562 * 11 10 9 13 13 O 1.21337 * 120.00182 * 359.97438 * 12 11 10 14 14 C 1.49454 * 119.99466 * 179.97438 * 12 11 10 15 15 O 1.21349 * 120.00033 * 359.97438 * 14 12 11 16 16 N 1.34775 * 119.99666 * 179.97438 * 14 12 11 17 17 C 1.46497 * 120.00290 * 180.02562 * 16 14 12 18 18 H 1.09002 * 109.47031 * 34.99871 * 17 16 14 19 19 C 1.52992 * 109.47408 * 154.99725 * 17 16 14 20 20 C 1.52997 * 109.47482 * 295.00294 * 19 17 16 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 17 22 22 O 1.42903 * 109.46726 * 180.02562 * 21 20 19 23 23 C 1.50699 * 109.47154 * 275.00360 * 17 16 14 24 24 C 1.38236 * 119.99912 * 319.72339 * 23 17 16 25 25 C 1.38240 * 120.00151 * 179.81152 * 24 23 17 26 26 C 1.38231 * 119.99531 * 0.39579 * 25 24 23 27 27 C 1.38233 * 120.00345 * 359.85881 * 26 25 24 28 28 C 1.38232 * 120.00107 * 359.95306 * 27 26 25 29 29 H 0.97004 * 119.99957 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47386 * 59.99396 * 9 7 2 31 31 H 1.08997 * 109.46729 * 299.99712 * 9 7 2 32 32 H 1.09004 * 109.46998 * 59.99026 * 10 9 7 33 33 H 1.09001 * 109.46875 * 300.00072 * 10 9 7 34 34 H 0.96995 * 119.99699 * 359.97438 * 11 10 9 35 35 H 0.97003 * 119.99861 * 0.02562 * 16 14 12 36 36 H 1.09002 * 109.47103 * 175.00047 * 19 17 16 37 37 H 1.08998 * 109.46862 * 55.00859 * 19 17 16 38 38 H 1.09002 * 109.47153 * 59.99783 * 20 19 17 39 39 H 1.09001 * 109.46832 * 299.99974 * 20 19 17 40 40 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 41 41 H 1.08992 * 109.47399 * 59.99823 * 21 20 19 42 42 H 0.96700 * 113.99509 * 179.97438 * 22 21 20 43 43 H 1.08006 * 119.99710 * 359.97438 * 24 23 17 44 44 H 1.07995 * 120.00176 * 180.22759 * 25 24 23 45 45 H 1.08006 * 119.99475 * 179.83643 * 26 25 24 46 46 H 1.08003 * 120.00170 * 179.97438 * 27 26 25 47 47 H 1.07994 * 120.00242 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.1865 -6.0981 0.0018 13 8 3.3998 -6.0981 0.0014 14 6 1.4391 -7.3923 0.0030 15 8 0.2256 -7.3922 0.0039 16 7 2.1129 -8.5595 0.0031 17 6 1.3805 -9.8283 0.0037 18 1 0.4695 -9.7222 -0.5854 19 6 2.2573 -10.9237 -0.6059 20 6 2.5177 -10.6074 -2.0800 21 6 3.3941 -11.7033 -2.6897 22 8 3.6377 -11.4075 -4.0664 23 6 1.0225 -10.2009 1.4193 24 6 1.9337 -9.9982 2.4389 25 6 1.6039 -10.3364 3.7381 26 6 0.3659 -10.8850 4.0164 27 6 -0.5433 -11.0926 2.9960 28 6 -0.2150 -10.7508 1.6975 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.8719 -3.6044 0.8905 33 1 2.8717 -3.6044 -0.8895 34 1 0.5426 -4.9308 0.0019 35 1 3.0829 -8.5596 0.0028 36 1 1.7480 -11.8840 -0.5248 37 1 3.2060 -10.9694 -0.0710 38 1 3.0270 -9.6471 -2.1611 39 1 1.5690 -10.5618 -2.6148 40 1 4.3428 -11.7494 -2.1550 41 1 2.8844 -12.6633 -2.6087 42 1 4.1885 -12.0617 -4.5177 43 1 2.9023 -9.5731 2.2208 44 1 2.3143 -10.1746 4.5352 45 1 0.1093 -11.1517 5.0310 46 1 -1.5103 -11.5215 3.2134 47 1 -0.9254 -10.9126 0.9004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346623859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:06 Heat of formation + Delta-G solvation = -116.033008 kcal Electronic energy + Delta-G solvation = -27888.631347 eV Core-core repulsion = 23842.571955 eV Total energy + Delta-G solvation = -4046.059392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = -0.75 seconds Orbital eigenvalues (eV) -40.73866 -39.51870 -38.22670 -37.57835 -36.21146 -35.05109 -33.07185 -32.74446 -31.55520 -31.06115 -29.79958 -28.02189 -25.70382 -24.30842 -23.43766 -22.78809 -21.72112 -21.13445 -20.78764 -20.19174 -18.36514 -17.61078 -17.25944 -16.92091 -16.42419 -15.92213 -15.89172 -15.50498 -15.36253 -14.88434 -14.73464 -14.49603 -14.30188 -14.09020 -13.75130 -13.57935 -13.50735 -13.27044 -13.05263 -12.81758 -12.31126 -12.27211 -12.14273 -11.54332 -11.44988 -11.37838 -11.28769 -11.23180 -11.15501 -11.03867 -10.67777 -10.37883 -10.34833 -9.79137 -9.48923 -9.42597 -9.20513 -9.11743 -8.93900 -8.68095 -8.40504 -6.09081 -4.12859 1.08443 1.19888 1.63631 2.53476 3.31319 3.35454 3.38161 3.44175 3.50437 3.75927 3.91365 4.41084 4.45274 4.48282 4.51160 4.66463 4.76764 4.79517 4.87899 4.91828 4.93781 5.05787 5.18116 5.23696 5.27650 5.34199 5.35730 5.47564 5.72613 5.75406 5.81026 5.88973 6.07052 6.19254 6.23968 6.25009 6.30232 6.39395 6.60922 6.70645 6.77105 7.05347 7.25101 7.47660 7.59072 7.67959 7.88098 7.94311 8.22422 8.35393 8.92510 9.51912 11.02405 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010891 B = 0.002404 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.308953 B =11646.281306 C =13457.519123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.119 3.881 11 N -0.686 5.686 12 C 0.497 3.503 13 O -0.534 6.534 14 C 0.511 3.489 15 O -0.514 6.514 16 N -0.700 5.700 17 C 0.187 3.813 18 H 0.102 0.898 19 C -0.118 4.118 20 C -0.125 4.125 21 C 0.076 3.924 22 O -0.574 6.574 23 C -0.097 4.097 24 C -0.104 4.104 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.120 4.120 28 C -0.103 4.103 29 H 0.263 0.737 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.410 0.590 35 H 0.412 0.588 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.379 0.621 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 -29.738 1.598 29.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.003 4.003 11 N -0.336 5.336 12 C 0.277 3.723 13 O -0.412 6.412 14 C 0.292 3.708 15 O -0.388 6.388 16 N -0.354 5.354 17 C 0.082 3.918 18 H 0.120 0.880 19 C -0.156 4.156 20 C -0.162 4.162 21 C -0.001 4.001 22 O -0.379 6.379 23 C -0.098 4.098 24 C -0.122 4.122 25 C -0.138 4.138 26 C -0.138 4.138 27 C -0.138 4.138 28 C -0.121 4.121 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.246 0.754 35 H 0.249 0.751 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.226 0.774 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.825 -29.046 1.730 29.234 hybrid contribution 0.712 0.469 0.033 0.853 sum 3.537 -28.577 1.763 28.848 Atomic orbital electron populations 1.69953 1.06099 1.27062 1.49979 1.25003 0.94900 0.99431 0.94926 0.86552 0.79494 0.82607 0.78760 1.20094 1.21227 1.20100 1.20978 0.93179 0.90262 1.51846 0.92222 1.19348 0.94180 0.90848 0.98232 1.21931 0.96267 0.80768 1.01307 1.46231 1.11783 1.05798 1.69836 1.19971 0.87717 0.85254 0.79387 1.90722 1.13209 1.87540 1.49706 1.20465 0.87788 0.85543 0.77002 1.90757 1.13413 1.87557 1.47115 1.45791 1.11161 1.04425 1.74023 1.19897 0.96511 0.82528 0.92834 0.87969 1.21777 1.00463 0.98277 0.95077 1.21560 1.00864 0.99423 0.94385 1.22169 0.98324 0.97466 0.82172 1.86512 1.74625 1.53145 1.23665 1.20132 0.94714 0.99690 0.95286 1.20966 0.99375 0.99256 0.92641 1.21149 0.97002 0.99120 0.96574 1.21177 0.94072 0.99355 0.99187 1.21129 0.99470 1.00365 0.92869 1.20993 0.95647 0.98492 0.96984 0.92713 0.95668 0.95683 0.91904 0.91851 0.75403 0.75143 0.89658 0.90626 0.90538 0.90795 0.93593 0.93691 0.77392 0.86188 0.86044 0.86165 0.86001 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.51 5.61 -4.04 -0.02 2.49 16 11 N -0.69 -12.70 5.55 -60.73 -0.34 -13.04 16 12 C 0.50 8.63 7.89 -11.58 -0.09 8.54 16 13 O -0.53 -10.07 16.48 5.51 0.09 -9.98 16 14 C 0.51 7.65 7.85 -11.58 -0.09 7.55 16 15 O -0.51 -8.71 16.14 5.50 0.09 -8.62 16 16 N -0.70 -7.83 3.77 -55.37 -0.21 -8.04 16 17 C 0.19 1.73 2.17 -69.09 -0.15 1.58 16 18 H 0.10 1.05 7.44 -51.93 -0.39 0.67 16 19 C -0.12 -0.76 4.73 -26.74 -0.13 -0.89 16 20 C -0.12 -0.96 5.47 -26.73 -0.15 -1.11 16 21 C 0.08 0.51 7.05 37.16 0.26 0.77 16 22 O -0.57 -4.79 13.66 -35.23 -0.48 -5.27 16 23 C -0.10 -0.96 4.91 -104.62 -0.51 -1.47 16 24 C -0.10 -1.03 9.32 -39.58 -0.37 -1.40 16 25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.12 -1.06 10.05 -39.59 -0.40 -1.45 16 27 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 28 C -0.10 -0.98 9.67 -39.58 -0.38 -1.36 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.41 7.30 7.94 -40.82 -0.32 6.98 16 35 H 0.41 4.13 8.07 -40.82 -0.33 3.80 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.71 7.75 -51.93 -0.40 0.31 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.38 1.38 9.12 45.56 0.42 1.79 16 43 H 0.12 1.08 7.73 -52.48 -0.41 0.68 16 44 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 45 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 46 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 47 H 0.12 0.99 8.04 -52.49 -0.42 0.57 16 LS Contribution 403.81 15.07 6.09 6.09 Total: -1.00 -33.96 403.81 -8.89 -42.85 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.47 Total: 8.03 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -3.38 Total: -2.83 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.19 Total: -46.64 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.30 Total: -23.87 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.96 -8.89 -42.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346623859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.183 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.75 seconds