Wall clock time and date at job start Tue Mar 31 2020 23:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00206 * 2 1 4 4 H 1.48501 * 109.47101 * 240.00035 * 3 2 1 5 5 H 1.48493 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46969 * 120.00078 * 3 2 1 7 7 C 1.37881 * 119.99498 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99510 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47297 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47297 * 179.97438 * 10 9 7 12 12 C 1.34782 * 119.99762 * 180.02562 * 11 10 9 13 13 O 1.21337 * 120.00182 * 359.97438 * 12 11 10 14 14 C 1.49454 * 119.99466 * 179.97438 * 12 11 10 15 15 O 1.21349 * 120.00033 * 359.97438 * 14 12 11 16 16 N 1.34775 * 119.99666 * 179.97438 * 14 12 11 17 17 C 1.46497 * 120.00290 * 180.02562 * 16 14 12 18 18 H 1.09002 * 109.47031 * 34.99871 * 17 16 14 19 19 C 1.52992 * 109.47408 * 154.99725 * 17 16 14 20 20 C 1.52997 * 109.47482 * 295.00294 * 19 17 16 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 17 22 22 O 1.42903 * 109.46726 * 180.02562 * 21 20 19 23 23 C 1.50699 * 109.47154 * 275.00360 * 17 16 14 24 24 C 1.38236 * 119.99912 * 319.72339 * 23 17 16 25 25 C 1.38240 * 120.00151 * 179.81152 * 24 23 17 26 26 C 1.38231 * 119.99531 * 0.39579 * 25 24 23 27 27 C 1.38233 * 120.00345 * 359.85881 * 26 25 24 28 28 C 1.38232 * 120.00107 * 359.95306 * 27 26 25 29 29 H 0.97004 * 119.99957 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47386 * 59.99396 * 9 7 2 31 31 H 1.08997 * 109.46729 * 299.99712 * 9 7 2 32 32 H 1.09004 * 109.46998 * 59.99026 * 10 9 7 33 33 H 1.09001 * 109.46875 * 300.00072 * 10 9 7 34 34 H 0.96995 * 119.99699 * 359.97438 * 11 10 9 35 35 H 0.97003 * 119.99861 * 0.02562 * 16 14 12 36 36 H 1.09002 * 109.47103 * 175.00047 * 19 17 16 37 37 H 1.08998 * 109.46862 * 55.00859 * 19 17 16 38 38 H 1.09002 * 109.47153 * 59.99783 * 20 19 17 39 39 H 1.09001 * 109.46832 * 299.99974 * 20 19 17 40 40 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 41 41 H 1.08992 * 109.47399 * 59.99823 * 21 20 19 42 42 H 0.96700 * 113.99509 * 179.97438 * 22 21 20 43 43 H 1.08006 * 119.99710 * 359.97438 * 24 23 17 44 44 H 1.07995 * 120.00176 * 180.22759 * 25 24 23 45 45 H 1.08006 * 119.99475 * 179.83643 * 26 25 24 46 46 H 1.08003 * 120.00170 * 179.97438 * 27 26 25 47 47 H 1.07994 * 120.00242 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.1865 -6.0981 0.0018 13 8 3.3998 -6.0981 0.0014 14 6 1.4391 -7.3923 0.0030 15 8 0.2256 -7.3922 0.0039 16 7 2.1129 -8.5595 0.0031 17 6 1.3805 -9.8283 0.0037 18 1 0.4695 -9.7222 -0.5854 19 6 2.2573 -10.9237 -0.6059 20 6 2.5177 -10.6074 -2.0800 21 6 3.3941 -11.7033 -2.6897 22 8 3.6377 -11.4075 -4.0664 23 6 1.0225 -10.2009 1.4193 24 6 1.9337 -9.9982 2.4389 25 6 1.6039 -10.3364 3.7381 26 6 0.3659 -10.8850 4.0164 27 6 -0.5433 -11.0926 2.9960 28 6 -0.2150 -10.7508 1.6975 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.8719 -3.6044 0.8905 33 1 2.8717 -3.6044 -0.8895 34 1 0.5426 -4.9308 0.0019 35 1 3.0829 -8.5596 0.0028 36 1 1.7480 -11.8840 -0.5248 37 1 3.2060 -10.9694 -0.0710 38 1 3.0270 -9.6471 -2.1611 39 1 1.5690 -10.5618 -2.6148 40 1 4.3428 -11.7494 -2.1550 41 1 2.8844 -12.6633 -2.6087 42 1 4.1885 -12.0617 -4.5177 43 1 2.9023 -9.5731 2.2208 44 1 2.3143 -10.1746 4.5352 45 1 0.1093 -11.1517 5.0310 46 1 -1.5103 -11.5215 3.2134 47 1 -0.9254 -10.9126 0.9004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346623859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:45 Heat of formation + Delta-G solvation = -140.563487 kcal Electronic energy + Delta-G solvation = -27889.695068 eV Core-core repulsion = 23842.571955 eV Total energy + Delta-G solvation = -4047.123113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 17.01 seconds Orbital eigenvalues (eV) -41.89061 -40.50132 -39.40674 -38.21544 -37.15030 -36.62602 -34.87964 -33.76071 -32.29771 -31.75083 -31.69475 -28.77363 -27.35999 -25.48076 -24.49202 -23.53063 -22.87969 -22.31251 -21.75487 -21.37430 -19.64378 -18.59661 -18.22065 -18.05766 -17.81285 -17.10334 -16.89885 -16.53999 -16.32638 -16.30007 -16.13069 -15.60052 -15.48384 -15.05797 -14.78483 -14.56892 -14.35346 -14.30609 -14.22115 -13.87136 -13.77898 -13.27699 -12.93498 -12.91497 -12.84659 -12.76665 -12.55115 -12.28248 -12.10164 -12.01201 -11.92713 -11.81093 -11.69297 -11.46633 -10.85736 -10.72562 -10.61810 -10.44073 -10.21566 -9.81374 -9.66040 -8.24055 -6.35626 0.29670 0.39804 0.50474 1.31589 1.43102 1.45192 1.53382 2.11160 2.39304 2.64415 2.87177 3.10777 3.22614 3.42815 3.77785 3.87049 3.91017 4.04155 4.16192 4.26952 4.31258 4.37276 4.41267 4.43531 4.50603 4.60911 4.63794 4.69701 4.75881 4.79511 4.87120 5.02994 5.06460 5.08049 5.14436 5.24527 5.29602 5.40676 5.53356 5.56439 5.62643 5.63770 5.74768 5.92937 6.10348 6.11827 6.34112 6.69332 6.78645 6.91517 6.92683 7.33968 8.87905 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010891 B = 0.002404 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.308953 B =11646.281306 C =13457.519123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.019 3.981 10 C 0.138 3.862 11 N -0.689 5.689 12 C 0.499 3.501 13 O -0.547 6.547 14 C 0.517 3.483 15 O -0.537 6.537 16 N -0.680 5.680 17 C 0.187 3.813 18 H 0.092 0.908 19 C -0.105 4.105 20 C -0.125 4.125 21 C 0.075 3.925 22 O -0.603 6.603 23 C -0.108 4.108 24 C -0.118 4.118 25 C -0.131 4.131 26 C -0.127 4.127 27 C -0.127 4.127 28 C -0.116 4.116 29 H 0.266 0.734 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.414 0.586 35 H 0.419 0.581 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.397 0.603 43 H 0.124 0.876 44 H 0.135 0.865 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.444 -31.090 2.100 31.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.083 0.917 9 C -0.018 4.018 10 C 0.016 3.984 11 N -0.340 5.340 12 C 0.280 3.720 13 O -0.426 6.426 14 C 0.297 3.703 15 O -0.413 6.413 16 N -0.333 5.333 17 C 0.083 3.917 18 H 0.110 0.890 19 C -0.143 4.143 20 C -0.163 4.163 21 C -0.003 4.003 22 O -0.411 6.411 23 C -0.109 4.109 24 C -0.137 4.137 25 C -0.149 4.149 26 C -0.145 4.145 27 C -0.145 4.145 28 C -0.134 4.134 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.250 0.750 35 H 0.257 0.743 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.247 0.753 43 H 0.142 0.858 44 H 0.153 0.847 45 H 0.158 0.842 46 H 0.159 0.841 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.932 -30.460 2.226 30.794 hybrid contribution 0.372 0.791 -0.113 0.882 sum 4.304 -29.669 2.113 30.054 Atomic orbital electron populations 1.70076 1.07742 1.28130 1.50880 1.25934 0.95777 1.03330 0.94362 0.85449 0.78221 0.77838 0.79251 1.19155 1.20821 1.19119 1.21426 0.93768 0.91542 1.51716 0.91659 1.19164 0.94325 0.91957 0.96369 1.21476 0.95077 0.80768 1.01120 1.46077 1.11875 1.05526 1.70556 1.20369 0.87610 0.85753 0.78293 1.90708 1.13888 1.87897 1.50095 1.19963 0.87274 0.85498 0.77542 1.90756 1.14076 1.87675 1.48840 1.45775 1.11571 1.04099 1.71840 1.20066 0.96551 0.82020 0.93014 0.89007 1.21715 1.00753 0.97798 0.93992 1.21543 1.00342 0.99144 0.95223 1.22238 0.98901 0.97548 0.81567 1.86457 1.75358 1.54629 1.24687 1.20182 0.95131 1.00298 0.95260 1.21122 0.99703 0.99765 0.93066 1.21421 0.97671 0.99023 0.96807 1.21491 0.93857 0.98858 1.00248 1.21432 1.00370 1.00048 0.92648 1.21226 0.95744 0.98701 0.97771 0.92541 0.97497 0.97505 0.92024 0.92018 0.75029 0.74287 0.87716 0.89194 0.92523 0.92030 0.92268 0.91865 0.75283 0.85790 0.84662 0.84220 0.84138 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.45 13.29 21.45 0.28 -55.17 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.55 -30.48 9.11 25.60 0.23 -30.25 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 0.99 5.09 29.85 0.15 1.15 16 10 C 0.14 5.91 5.61 86.38 0.48 6.40 16 11 N -0.69 -25.87 5.55 -464.41 -2.58 -28.45 16 12 C 0.50 17.31 7.89 87.27 0.69 17.99 16 13 O -0.55 -20.41 16.48 -3.21 -0.05 -20.46 16 14 C 0.52 15.40 7.85 87.27 0.68 16.08 16 15 O -0.54 -18.27 16.14 -3.24 -0.05 -18.33 16 16 N -0.68 -14.76 3.77 -447.45 -1.69 -16.45 16 17 C 0.19 3.28 2.17 44.24 0.10 3.38 16 18 H 0.09 1.85 7.44 -2.39 -0.02 1.84 16 19 C -0.10 -1.16 4.73 30.59 0.14 -1.02 16 20 C -0.12 -1.80 5.47 30.59 0.17 -1.63 16 21 C 0.07 0.85 7.05 71.98 0.51 1.36 16 22 O -0.60 -9.38 13.66 -148.98 -2.04 -11.42 16 23 C -0.11 -2.01 4.91 -19.87 -0.10 -2.11 16 24 C -0.12 -2.19 9.32 22.27 0.21 -1.98 16 25 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 26 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 27 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 28 C -0.12 -2.07 9.67 22.27 0.22 -1.85 16 29 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 30 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 33 H 0.06 2.65 8.14 -2.39 -0.02 2.64 16 34 H 0.41 15.09 7.94 -92.71 -0.74 14.35 16 35 H 0.42 8.00 8.07 -92.71 -0.75 7.25 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 1.03 7.75 -2.39 -0.02 1.01 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.40 2.37 9.12 -74.06 -0.68 1.69 16 43 H 0.12 2.08 7.73 -2.91 -0.02 2.06 16 44 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 45 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 46 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 47 H 0.13 2.00 8.04 -2.91 -0.02 1.97 16 Total: -1.00 -72.50 403.81 -0.64 -73.14 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: -1.16 Total: 28.81 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 4.62 Total: 2.62 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -3.98 Total: -100.06 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -2.14 Total: -50.20 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -72.50 -0.64 -73.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346623859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.424 kcal (2) G-P(sol) polarization free energy of solvation -72.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.01 seconds