Wall clock time and date at job start Tue Mar 31 2020 23:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00515 * 2 1 4 4 H 1.48506 * 109.47268 * 270.00416 * 3 2 1 5 5 H 1.48502 * 109.46924 * 29.99844 * 3 2 1 6 6 H 1.48494 * 109.47505 * 150.00033 * 3 2 1 7 7 C 1.37886 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00159 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99741 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46852 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46668 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99584 * 179.97438 * 11 10 9 13 13 O 1.21344 * 119.99919 * 0.02562 * 12 11 10 14 14 C 1.49449 * 119.99659 * 180.02562 * 12 11 10 15 15 O 1.21346 * 120.00541 * 359.97438 * 14 12 11 16 16 N 1.34782 * 119.99795 * 180.02562 * 14 12 11 17 17 C 1.46493 * 120.00030 * 179.97438 * 16 14 12 18 18 H 1.09006 * 109.47414 * 35.00100 * 17 16 14 19 19 C 1.52996 * 109.47485 * 275.00143 * 17 16 14 20 20 C 1.52997 * 109.47131 * 64.99753 * 19 17 16 21 21 C 1.53006 * 109.47127 * 180.02562 * 20 19 17 22 22 O 1.42895 * 109.47036 * 179.97438 * 21 20 19 23 23 C 1.50703 * 109.47058 * 154.99924 * 17 16 14 24 24 C 1.38229 * 120.00218 * 39.72881 * 23 17 16 25 25 C 1.38232 * 120.00500 * 179.79087 * 24 23 17 26 26 C 1.38240 * 119.99413 * 0.43458 * 25 24 23 27 27 C 1.38236 * 120.00245 * 359.82145 * 26 25 24 28 28 C 1.38226 * 119.99739 * 359.96804 * 27 26 25 29 29 H 0.97000 * 119.99344 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47662 * 59.99882 * 9 7 2 31 31 H 1.09006 * 109.46699 * 299.99883 * 9 7 2 32 32 H 1.08994 * 109.47303 * 59.99964 * 10 9 7 33 33 H 1.08995 * 109.46664 * 299.99589 * 10 9 7 34 34 H 0.96999 * 120.00364 * 0.02562 * 11 10 9 35 35 H 0.97001 * 119.99767 * 359.97438 * 16 14 12 36 36 H 1.09001 * 109.46993 * 304.99622 * 19 17 16 37 37 H 1.09004 * 109.47298 * 185.00036 * 19 17 16 38 38 H 1.09001 * 109.46832 * 60.00325 * 20 19 17 39 39 H 1.08993 * 109.47194 * 299.99846 * 20 19 17 40 40 H 1.09001 * 109.46801 * 300.00272 * 21 20 19 41 41 H 1.09001 * 109.46998 * 59.99868 * 21 20 19 42 42 H 0.96700 * 114.00205 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.99528 * 359.97438 * 24 23 17 44 44 H 1.08001 * 120.00721 * 180.27597 * 25 24 23 45 45 H 1.08004 * 119.99356 * 179.83351 * 26 25 24 46 46 H 1.07997 * 119.99543 * 179.97438 * 27 26 25 47 47 H 1.07999 * 119.99741 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5126 -4.9308 0.0001 12 6 2.1865 -6.0981 -0.0003 13 8 3.3999 -6.0981 -0.0007 14 6 1.4391 -7.3923 -0.0003 15 8 0.2257 -7.3923 0.0006 16 7 2.1130 -8.5596 -0.0002 17 6 1.3805 -9.8282 0.0005 18 1 0.4695 -9.7221 -0.5887 19 6 1.0170 -10.2066 1.4376 20 6 0.0401 -9.1749 2.0052 21 6 -0.3229 -9.5530 3.4426 22 8 -1.2348 -8.5891 3.9729 23 6 2.2443 -10.9073 -0.6000 24 6 3.5955 -10.9511 -0.3122 25 6 4.3871 -11.9435 -0.8595 26 6 3.8289 -12.8867 -1.7019 27 6 2.4786 -12.8398 -1.9940 28 6 1.6863 -11.8500 -1.4432 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5568 -0.8902 31 1 0.6247 -2.5570 0.8898 32 1 2.8719 -3.6045 0.8894 33 1 2.8718 -3.6044 -0.8905 34 1 0.5426 -4.9308 0.0000 35 1 3.0830 -8.5596 -0.0005 36 1 1.9201 -10.2260 2.0477 37 1 0.5510 -11.1920 1.4471 38 1 -0.8629 -9.1556 1.3951 39 1 0.5062 -8.1897 1.9957 40 1 -0.7887 -10.5384 3.4525 41 1 0.5804 -9.5720 4.0524 42 1 -1.5091 -8.7662 4.8831 43 1 4.0323 -10.2117 0.3428 44 1 5.4420 -11.9804 -0.6310 45 1 4.4479 -13.6605 -2.1316 46 1 2.0427 -13.5765 -2.6525 47 1 0.6313 -11.8136 -1.6711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346623869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:20 Heat of formation + Delta-G solvation = -111.886634 kcal Electronic energy + Delta-G solvation = -28064.873965 eV Core-core repulsion = 24018.994374 eV Total energy + Delta-G solvation = -4045.879592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 7.07 seconds Orbital eigenvalues (eV) -40.85471 -39.63625 -38.37798 -37.23405 -36.05911 -35.01582 -33.02665 -32.76433 -31.61918 -31.21745 -29.79186 -27.92923 -25.69829 -24.38308 -23.44504 -22.93632 -21.58650 -21.09461 -20.75028 -20.11595 -18.48200 -17.47126 -17.13102 -16.93071 -16.45749 -16.09479 -15.63595 -15.60329 -15.35317 -14.89004 -14.72713 -14.54043 -14.42149 -13.90190 -13.76227 -13.55438 -13.50161 -13.32744 -12.92157 -12.77973 -12.35082 -12.30777 -12.14256 -11.54192 -11.44906 -11.23564 -11.20730 -11.11404 -11.05220 -11.04147 -10.65213 -10.37724 -10.10743 -9.77860 -9.47527 -9.38096 -9.29483 -9.18576 -9.06874 -8.67302 -8.39865 -6.08277 -4.11895 0.91281 1.02588 1.63403 2.53914 3.30219 3.36374 3.37995 3.40223 3.46070 3.88945 3.91220 4.33081 4.41837 4.48559 4.61827 4.72482 4.75384 4.76022 4.79680 4.99109 5.10195 5.11733 5.17672 5.28503 5.30693 5.35809 5.47847 5.55023 5.62221 5.67509 5.98200 6.04525 6.07958 6.14690 6.19851 6.23628 6.25944 6.30453 6.59652 6.61869 6.71614 7.05721 7.48728 7.48927 7.60361 7.68301 7.89124 7.94777 8.23254 8.36279 8.93682 9.52808 11.03205 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.002338 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.320661 B =11970.943903 C =13492.725705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.119 3.881 11 N -0.685 5.685 12 C 0.497 3.503 13 O -0.535 6.535 14 C 0.508 3.492 15 O -0.510 6.510 16 N -0.701 5.701 17 C 0.187 3.813 18 H 0.103 0.897 19 C -0.122 4.122 20 C -0.119 4.119 21 C 0.076 3.924 22 O -0.570 6.570 23 C -0.092 4.092 24 C -0.111 4.111 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.106 4.106 29 H 0.263 0.737 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.411 0.589 35 H 0.411 0.589 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.377 0.623 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.221 -29.678 1.685 29.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.336 5.336 12 C 0.276 3.724 13 O -0.413 6.413 14 C 0.290 3.710 15 O -0.384 6.384 16 N -0.357 5.357 17 C 0.083 3.917 18 H 0.120 0.880 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.002 4.002 22 O -0.375 6.375 23 C -0.093 4.093 24 C -0.129 4.129 25 C -0.133 4.133 26 C -0.137 4.137 27 C -0.136 4.136 28 C -0.124 4.124 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.247 0.753 35 H 0.249 0.751 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.223 0.777 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.121 -29.244 1.090 29.430 hybrid contribution 0.420 0.606 0.547 0.918 sum 3.542 -28.638 1.637 28.903 Atomic orbital electron populations 1.69964 1.06085 1.26928 1.50046 1.25008 0.94904 0.99436 0.94965 0.86497 0.79790 0.82977 0.78181 1.20557 1.21162 1.19743 1.21012 0.93199 0.90250 1.51712 0.92188 1.19357 0.94186 0.90847 0.98270 1.21930 0.96269 0.80784 1.01286 1.46231 1.11817 1.05760 1.69751 1.19975 0.87716 0.85277 0.79423 1.90723 1.13254 1.87548 1.49767 1.20428 0.87876 0.85500 0.77229 1.90784 1.13215 1.87517 1.46891 1.45893 1.11279 1.04410 1.74089 1.19893 0.94658 0.80608 0.96567 0.87957 1.21935 0.99884 0.99404 0.94792 1.21617 1.00144 0.99736 0.94100 1.22205 0.91773 0.90891 0.95305 1.86563 1.65566 1.52122 1.33220 1.19859 0.94312 0.96816 0.98308 1.20997 0.93223 0.98692 1.00029 1.21164 0.99981 0.94860 0.97315 1.21217 0.95309 0.98982 0.98194 1.21153 0.94036 0.98513 0.99852 1.21017 1.00200 0.94728 0.96454 0.92780 0.95664 0.95625 0.91891 0.91894 0.75329 0.75137 0.91190 0.90456 0.90298 0.90756 0.94050 0.94104 0.77713 0.85853 0.85762 0.85997 0.85823 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 10 C 0.12 2.52 5.61 -4.04 -0.02 2.50 16 11 N -0.68 -12.68 5.55 -60.73 -0.34 -13.02 16 12 C 0.50 8.63 7.89 -11.58 -0.09 8.54 16 13 O -0.53 -10.17 16.48 5.50 0.09 -10.08 16 14 C 0.51 7.51 6.46 -11.58 -0.07 7.43 16 15 O -0.51 -8.26 13.61 5.50 0.07 -8.18 16 16 N -0.70 -8.05 4.97 -55.37 -0.28 -8.32 16 17 C 0.19 1.77 2.46 -69.09 -0.17 1.60 16 18 H 0.10 1.06 7.44 -51.93 -0.39 0.67 16 19 C -0.12 -1.04 4.87 -26.73 -0.13 -1.17 16 20 C -0.12 -1.34 4.19 -26.73 -0.11 -1.46 16 21 C 0.08 0.75 7.05 37.16 0.26 1.01 16 22 O -0.57 -6.65 13.66 -35.23 -0.48 -7.13 16 23 C -0.09 -0.77 4.96 -104.62 -0.52 -1.29 16 24 C -0.11 -0.89 9.06 -39.59 -0.36 -1.24 16 25 C -0.12 -0.83 10.05 -39.58 -0.40 -1.22 16 26 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 27 C -0.12 -0.80 10.05 -39.59 -0.40 -1.20 16 28 C -0.11 -0.80 9.67 -39.59 -0.38 -1.18 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.41 7.31 7.94 -40.82 -0.32 6.99 16 35 H 0.41 4.41 6.33 -40.82 -0.26 4.15 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 1.01 7.85 -51.93 -0.41 0.60 16 39 H 0.07 1.05 5.64 -51.93 -0.29 0.76 16 40 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.38 2.49 9.12 45.56 0.42 2.90 16 43 H 0.12 0.88 6.90 -52.48 -0.36 0.52 16 44 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 46 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 47 H 0.13 0.78 8.04 -52.49 -0.42 0.36 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -33.50 395.03 -8.83 -42.33 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.23 Total: 9.65 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -3.34 Total: -2.02 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.12 Total: -46.93 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.32 Total: -25.40 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.50 -8.83 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346623869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.554 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.07 seconds