Wall clock time and date at job start Tue Mar 31 2020 23:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00515 * 2 1 4 4 H 1.48506 * 109.47268 * 270.00416 * 3 2 1 5 5 H 1.48502 * 109.46924 * 29.99844 * 3 2 1 6 6 H 1.48494 * 109.47505 * 150.00033 * 3 2 1 7 7 C 1.37886 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00159 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99741 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46852 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46668 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99584 * 179.97438 * 11 10 9 13 13 O 1.21344 * 119.99919 * 0.02562 * 12 11 10 14 14 C 1.49449 * 119.99659 * 180.02562 * 12 11 10 15 15 O 1.21346 * 120.00541 * 359.97438 * 14 12 11 16 16 N 1.34782 * 119.99795 * 180.02562 * 14 12 11 17 17 C 1.46493 * 120.00030 * 179.97438 * 16 14 12 18 18 H 1.09006 * 109.47414 * 35.00100 * 17 16 14 19 19 C 1.52996 * 109.47485 * 275.00143 * 17 16 14 20 20 C 1.52997 * 109.47131 * 64.99753 * 19 17 16 21 21 C 1.53006 * 109.47127 * 180.02562 * 20 19 17 22 22 O 1.42895 * 109.47036 * 179.97438 * 21 20 19 23 23 C 1.50703 * 109.47058 * 154.99924 * 17 16 14 24 24 C 1.38229 * 120.00218 * 39.72881 * 23 17 16 25 25 C 1.38232 * 120.00500 * 179.79087 * 24 23 17 26 26 C 1.38240 * 119.99413 * 0.43458 * 25 24 23 27 27 C 1.38236 * 120.00245 * 359.82145 * 26 25 24 28 28 C 1.38226 * 119.99739 * 359.96804 * 27 26 25 29 29 H 0.97000 * 119.99344 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47662 * 59.99882 * 9 7 2 31 31 H 1.09006 * 109.46699 * 299.99883 * 9 7 2 32 32 H 1.08994 * 109.47303 * 59.99964 * 10 9 7 33 33 H 1.08995 * 109.46664 * 299.99589 * 10 9 7 34 34 H 0.96999 * 120.00364 * 0.02562 * 11 10 9 35 35 H 0.97001 * 119.99767 * 359.97438 * 16 14 12 36 36 H 1.09001 * 109.46993 * 304.99622 * 19 17 16 37 37 H 1.09004 * 109.47298 * 185.00036 * 19 17 16 38 38 H 1.09001 * 109.46832 * 60.00325 * 20 19 17 39 39 H 1.08993 * 109.47194 * 299.99846 * 20 19 17 40 40 H 1.09001 * 109.46801 * 300.00272 * 21 20 19 41 41 H 1.09001 * 109.46998 * 59.99868 * 21 20 19 42 42 H 0.96700 * 114.00205 * 179.97438 * 22 21 20 43 43 H 1.08004 * 119.99528 * 359.97438 * 24 23 17 44 44 H 1.08001 * 120.00721 * 180.27597 * 25 24 23 45 45 H 1.08004 * 119.99356 * 179.83351 * 26 25 24 46 46 H 1.07997 * 119.99543 * 179.97438 * 27 26 25 47 47 H 1.07999 * 119.99741 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5126 -4.9308 0.0001 12 6 2.1865 -6.0981 -0.0003 13 8 3.3999 -6.0981 -0.0007 14 6 1.4391 -7.3923 -0.0003 15 8 0.2257 -7.3923 0.0006 16 7 2.1130 -8.5596 -0.0002 17 6 1.3805 -9.8282 0.0005 18 1 0.4695 -9.7221 -0.5887 19 6 1.0170 -10.2066 1.4376 20 6 0.0401 -9.1749 2.0052 21 6 -0.3229 -9.5530 3.4426 22 8 -1.2348 -8.5891 3.9729 23 6 2.2443 -10.9073 -0.6000 24 6 3.5955 -10.9511 -0.3122 25 6 4.3871 -11.9435 -0.8595 26 6 3.8289 -12.8867 -1.7019 27 6 2.4786 -12.8398 -1.9940 28 6 1.6863 -11.8500 -1.4432 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5568 -0.8902 31 1 0.6247 -2.5570 0.8898 32 1 2.8719 -3.6045 0.8894 33 1 2.8718 -3.6044 -0.8905 34 1 0.5426 -4.9308 0.0000 35 1 3.0830 -8.5596 -0.0005 36 1 1.9201 -10.2260 2.0477 37 1 0.5510 -11.1920 1.4471 38 1 -0.8629 -9.1556 1.3951 39 1 0.5062 -8.1897 1.9957 40 1 -0.7887 -10.5384 3.4525 41 1 0.5804 -9.5720 4.0524 42 1 -1.5091 -8.7662 4.8831 43 1 4.0323 -10.2117 0.3428 44 1 5.4420 -11.9804 -0.6310 45 1 4.4479 -13.6605 -2.1316 46 1 2.0427 -13.5765 -2.6525 47 1 0.6313 -11.8136 -1.6711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346623869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:16 Heat of formation + Delta-G solvation = -136.683116 kcal Electronic energy + Delta-G solvation = -28065.949221 eV Core-core repulsion = 24018.994374 eV Total energy + Delta-G solvation = -4046.954848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -41.97663 -40.53415 -39.53577 -38.09262 -37.10938 -36.57415 -34.86922 -33.85944 -32.30662 -31.76658 -31.69865 -28.73647 -27.36856 -25.60507 -24.46729 -23.63856 -22.83895 -22.31613 -21.70977 -21.28275 -19.71256 -18.59587 -18.29773 -18.00749 -17.73117 -17.32579 -16.87323 -16.52788 -16.36339 -16.21775 -15.98872 -15.86471 -15.40232 -14.98017 -14.89606 -14.55435 -14.31654 -14.26854 -14.14322 -13.98658 -13.64815 -13.27104 -13.10686 -12.95080 -12.83745 -12.78118 -12.53385 -12.29498 -12.02401 -11.99066 -11.91033 -11.77950 -11.68858 -11.44481 -10.88827 -10.71064 -10.62283 -10.36558 -10.21481 -9.82666 -9.69133 -8.23950 -6.35456 0.29834 0.36458 0.49455 1.32286 1.43094 1.43418 1.55067 2.11521 2.39292 2.64983 2.86401 3.10824 3.20938 3.41509 3.66786 3.87468 3.96047 4.03563 4.14904 4.26842 4.32217 4.37224 4.38779 4.43403 4.54160 4.57903 4.61573 4.68293 4.74102 4.79407 4.87882 5.03524 5.05599 5.06700 5.14819 5.24484 5.36547 5.40979 5.53377 5.55151 5.62304 5.63513 5.74759 5.91860 6.08762 6.11902 6.33418 6.68946 6.78876 6.90677 6.91928 7.34053 8.88179 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.002338 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.320661 B =11970.943903 C =13492.725705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.019 3.981 10 C 0.138 3.862 11 N -0.688 5.688 12 C 0.498 3.502 13 O -0.550 6.550 14 C 0.515 3.485 15 O -0.527 6.527 16 N -0.684 5.684 17 C 0.188 3.812 18 H 0.093 0.907 19 C -0.112 4.112 20 C -0.118 4.118 21 C 0.074 3.926 22 O -0.601 6.601 23 C -0.102 4.102 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.114 4.114 29 H 0.266 0.734 30 H 0.007 0.993 31 H 0.006 0.994 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.414 0.586 35 H 0.416 0.584 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.396 0.604 43 H 0.127 0.873 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.575 -31.459 1.677 31.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.019 4.019 10 C 0.016 3.984 11 N -0.339 5.339 12 C 0.279 3.721 13 O -0.428 6.428 14 C 0.296 3.704 15 O -0.403 6.403 16 N -0.339 5.339 17 C 0.085 3.915 18 H 0.111 0.889 19 C -0.150 4.150 20 C -0.155 4.155 21 C -0.003 4.003 22 O -0.410 6.410 23 C -0.103 4.103 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.140 4.140 28 C -0.133 4.133 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.250 0.750 35 H 0.255 0.745 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.245 0.755 43 H 0.145 0.855 44 H 0.158 0.842 45 H 0.160 0.840 46 H 0.161 0.839 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.494 -31.079 1.095 31.421 hybrid contribution 0.003 1.051 0.541 1.182 sum 4.497 -30.027 1.636 30.406 Atomic orbital electron populations 1.70086 1.07737 1.28046 1.50917 1.25947 0.95795 1.03365 0.94400 0.85383 0.78608 0.78142 0.78532 1.19715 1.20729 1.18727 1.21446 0.93749 0.91508 1.51606 0.91665 1.19173 0.94328 0.91988 0.96370 1.21475 0.95080 0.80788 1.01102 1.46076 1.11888 1.05502 1.70478 1.20408 0.87612 0.85834 0.78275 1.90706 1.13981 1.87937 1.50215 1.19871 0.87392 0.85327 0.77846 1.90790 1.13707 1.87548 1.48265 1.45885 1.11579 1.04195 1.72199 1.20006 0.94353 0.79778 0.97351 0.88881 1.21882 0.99699 0.99519 0.93906 1.21576 0.99619 0.99008 0.95331 1.22293 0.92299 0.91488 0.94242 1.86510 1.66110 1.53302 1.35049 1.19751 0.94396 0.96844 0.99283 1.21126 0.93206 0.99249 1.00466 1.21422 1.00808 0.94658 0.97225 1.21543 0.95610 0.99171 0.97673 1.21442 0.94184 0.98586 0.99804 1.21216 1.00969 0.94802 0.96283 0.92558 0.97462 0.97559 0.92083 0.91978 0.74991 0.74535 0.90229 0.88162 0.92305 0.93951 0.91610 0.92896 0.75481 0.85539 0.84240 0.83979 0.83887 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.65 13.29 21.45 0.28 -55.37 16 2 C 0.00 0.20 5.46 84.66 0.46 0.67 16 3 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 9 C 0.02 0.98 5.09 29.85 0.15 1.13 16 10 C 0.14 5.97 5.61 86.38 0.48 6.45 16 11 N -0.69 -26.13 5.55 -464.42 -2.58 -28.71 16 12 C 0.50 17.50 7.89 87.27 0.69 18.19 16 13 O -0.55 -20.84 16.48 -3.23 -0.05 -20.90 16 14 C 0.52 15.40 6.46 87.27 0.56 15.96 16 15 O -0.53 -17.53 13.61 -3.24 -0.04 -17.57 16 16 N -0.68 -15.44 4.97 -447.44 -2.22 -17.66 16 17 C 0.19 3.42 2.46 44.25 0.11 3.52 16 18 H 0.09 1.90 7.44 -2.38 -0.02 1.88 16 19 C -0.11 -1.77 4.87 30.59 0.15 -1.62 16 20 C -0.12 -2.65 4.19 30.60 0.13 -2.52 16 21 C 0.07 1.37 7.05 71.98 0.51 1.88 16 22 O -0.60 -13.85 13.66 -148.98 -2.03 -15.89 16 23 C -0.10 -1.57 4.96 -19.87 -0.10 -1.66 16 24 C -0.12 -1.75 9.06 22.27 0.20 -1.55 16 25 C -0.12 -1.51 10.05 22.27 0.22 -1.29 16 26 C -0.12 -1.34 10.05 22.27 0.22 -1.12 16 27 C -0.12 -1.39 10.05 22.27 0.22 -1.16 16 28 C -0.11 -1.54 9.67 22.27 0.22 -1.32 16 29 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.41 15.31 7.94 -92.71 -0.74 14.57 16 35 H 0.42 8.63 6.33 -92.71 -0.59 8.05 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.06 1.53 7.85 -2.39 -0.02 1.51 16 39 H 0.04 1.22 5.64 -2.39 -0.01 1.20 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.40 4.96 9.12 -74.06 -0.68 4.29 16 43 H 0.13 1.64 6.90 -2.91 -0.02 1.62 16 44 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 45 H 0.14 0.93 8.06 -2.91 -0.02 0.90 16 46 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 47 H 0.13 1.47 8.04 -2.91 -0.02 1.45 16 Total: -1.00 -72.23 395.03 -1.15 -73.38 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -0.99 Total: 31.56 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 4.47 Total: 5.24 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -4.52 Total: -101.74 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -2.13 Total: -54.35 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -72.23 -1.15 -73.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346623869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.303 kcal (2) G-P(sol) polarization free energy of solvation -72.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds