Wall clock time and date at job start Tue Mar 31 2020 21:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00036 * 2 1 4 4 H 1.48496 * 109.47565 * 240.00301 * 3 2 1 5 5 H 1.48504 * 109.47394 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46897 * 120.00606 * 3 2 1 7 7 C 1.37884 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99436 * 168.50408 * 7 2 1 9 9 C 1.50691 * 119.99840 * 348.50486 * 7 2 1 10 10 C 1.52999 * 115.55228 * 324.24656 * 9 7 2 11 11 N 1.46494 * 109.47360 * 305.96926 * 10 9 7 12 12 C 1.34780 * 120.00285 * 174.88533 * 11 10 9 13 13 O 1.21351 * 119.99771 * 5.10925 * 12 11 10 14 14 C 1.49447 * 120.00195 * 185.10934 * 12 11 10 15 15 O 1.21350 * 120.00093 * 354.70905 * 14 12 11 16 16 N 1.34778 * 120.00143 * 174.70310 * 14 12 11 17 17 C 1.46503 * 120.00059 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47051 * 180.02562 * 17 16 14 19 19 H 1.09000 * 109.25701 * 53.43619 * 18 17 16 20 20 C 1.50136 * 109.25738 * 293.95679 * 18 17 16 21 21 C 1.29873 * 124.17729 * 232.58846 * 20 18 17 22 22 C 1.51735 * 120.89439 * 0.66416 * 21 20 18 23 23 H 1.09001 * 113.84919 * 201.12227 * 22 21 20 24 24 C 1.55345 * 106.32144 * 326.46492 * 22 21 20 25 25 C 1.53413 * 109.25869 * 172.92217 * 18 17 16 26 26 H 1.09003 * 112.52172 * 291.37861 * 25 18 17 27 27 C 1.54279 * 108.97344 * 57.08057 * 25 18 17 28 28 O 1.43373 * 107.49781 * 92.15544 * 27 25 18 29 29 C 1.53005 * 117.50107 * 109.92462 * 9 7 2 30 30 C 1.53004 * 117.49836 * 178.58374 * 9 7 2 31 31 H 0.96997 * 119.99865 * 5.03306 * 1 2 3 32 32 H 1.08998 * 109.47399 * 185.96550 * 10 9 7 33 33 H 1.08999 * 109.46732 * 65.96658 * 10 9 7 34 34 H 0.97001 * 119.99787 * 354.87622 * 11 10 9 35 35 H 0.96999 * 119.99724 * 0.02562 * 16 14 12 36 36 H 1.09004 * 109.46824 * 300.00578 * 17 16 14 37 37 H 1.08993 * 109.46818 * 60.00635 * 17 16 14 38 38 H 1.08000 * 117.93406 * 52.59239 * 20 18 17 39 39 H 1.08004 * 119.56122 * 180.63333 * 21 20 18 40 40 H 1.08999 * 111.44792 * 311.14227 * 24 22 21 41 41 H 1.08996 * 111.43961 * 186.15039 * 24 22 21 42 42 H 1.09007 * 109.84508 * 211.64287 * 27 25 18 43 43 H 1.09004 * 109.84372 * 332.55887 * 27 25 18 44 44 H 1.08999 * 117.50061 * 215.00008 * 29 9 7 45 45 H 1.09001 * 117.49338 * 0.02562 * 29 9 7 46 46 H 1.09003 * 117.49809 * 359.97326 * 30 9 7 47 47 H 1.08994 * 117.50419 * 144.97166 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0683 -1.2034 -0.1870 9 6 1.2737 -2.4861 0.2590 10 6 0.1324 -2.4062 1.2749 11 7 0.6315 -1.8294 2.5256 12 6 -0.2227 -1.5662 3.5344 13 8 -1.3882 -1.8917 3.4431 14 6 0.2655 -0.8736 4.7654 15 8 1.4476 -0.6340 4.8985 16 7 -0.6073 -0.5148 5.7278 17 6 -0.1286 0.1637 6.9348 18 6 -1.3126 0.4569 7.8585 19 1 -1.8642 -0.4655 8.0397 20 6 -2.2198 1.4550 7.1989 21 6 -2.6190 2.5579 7.7564 22 6 -2.1673 2.9315 9.1559 23 1 -2.8186 3.6512 9.6519 24 6 -2.0213 1.5973 9.9382 25 6 -0.7899 1.0045 9.1928 26 1 -0.2546 0.2520 9.7720 27 6 0.0620 2.2615 8.9199 28 8 -0.8063 3.3988 9.0104 29 6 1.1073 -3.4520 -0.9159 30 6 2.0884 -3.7804 0.2123 31 1 -0.4850 0.8368 -0.0737 32 1 -0.2551 -3.4070 1.4655 33 1 -0.6644 -1.7776 0.8774 34 1 1.5767 -1.6370 2.6277 35 1 -1.5522 -0.7066 5.6216 36 1 0.5858 -0.4766 7.4524 37 1 0.3566 1.0994 6.6573 38 1 -2.5626 1.2424 6.1970 39 1 -3.2812 3.2186 7.2163 40 1 -2.9018 0.9663 9.8177 41 1 -1.8024 1.7748 10.9911 42 1 0.8542 2.3405 9.6646 43 1 0.4969 2.2043 7.9220 44 1 0.1848 -4.0305 -0.9652 45 1 1.5269 -3.1530 -1.8765 46 1 3.1530 -3.6973 -0.0066 47 1 1.8117 -4.5747 0.9054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354777518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:21 Heat of formation + Delta-G solvation = -63.701620 kcal Electronic energy + Delta-G solvation = -29080.666854 eV Core-core repulsion = 25036.876722 eV Total energy + Delta-G solvation = -4043.790133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.33558 -39.99136 -38.07030 -36.68982 -36.16411 -34.16356 -33.08058 -32.22487 -32.16698 -30.46852 -27.63612 -26.61779 -25.56141 -24.89518 -23.26384 -22.03802 -21.24571 -21.01775 -19.73754 -19.37912 -18.83865 -18.10625 -17.38638 -16.62394 -16.18482 -15.94954 -15.37705 -15.14321 -14.87333 -14.79437 -14.50153 -14.39520 -14.09720 -13.82991 -13.55945 -13.45108 -13.15942 -13.02946 -12.66640 -12.54950 -12.34069 -11.86020 -11.75808 -11.59942 -11.52761 -11.18462 -11.01103 -10.98102 -10.82505 -10.68100 -10.53760 -10.30090 -9.80176 -9.67096 -9.44963 -9.21508 -9.12259 -8.99285 -8.85101 -8.34386 -8.02931 -6.11582 -4.19424 1.85610 1.96756 2.79877 3.25413 3.31854 3.35750 3.63396 3.80585 3.93873 4.08516 4.25245 4.30986 4.42770 4.53710 4.65647 4.72629 4.80389 4.89104 4.96226 5.09914 5.19253 5.21321 5.37814 5.43142 5.45143 5.46910 5.49983 5.64229 5.76307 5.81792 5.95179 6.24136 6.26218 6.30415 6.47138 6.51580 6.53615 6.62250 6.63702 6.82490 6.98841 7.17619 7.25334 7.39099 7.47253 7.86010 8.00044 8.26496 8.35037 8.76372 8.79532 9.42160 10.87058 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.002819 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.365695 B = 9928.954478 C =10699.281267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.078 3.922 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.500 4.500 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.157 3.843 11 N -0.651 5.651 12 C 0.496 3.504 13 O -0.546 6.546 14 C 0.508 3.492 15 O -0.520 6.520 16 N -0.708 5.708 17 C 0.122 3.878 18 C -0.067 4.067 19 H 0.095 0.905 20 C -0.138 4.138 21 C -0.176 4.176 22 C 0.105 3.895 23 H 0.120 0.880 24 C -0.147 4.147 25 C -0.116 4.116 26 H 0.107 0.893 27 C 0.045 3.955 28 O -0.373 6.373 29 C -0.193 4.193 30 C -0.211 4.211 31 H 0.264 0.736 32 H 0.032 0.968 33 H 0.117 0.883 34 H 0.411 0.589 35 H 0.411 0.589 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.321 1.885 19.483 20.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.537 4.537 8 H 0.081 0.919 9 C 0.035 3.965 10 C 0.035 3.965 11 N -0.299 5.299 12 C 0.275 3.725 13 O -0.426 6.426 14 C 0.290 3.710 15 O -0.395 6.395 16 N -0.363 5.363 17 C -0.001 4.001 18 C -0.085 4.085 19 H 0.113 0.887 20 C -0.156 4.156 21 C -0.194 4.194 22 C 0.048 3.952 23 H 0.138 0.862 24 C -0.184 4.184 25 C -0.135 4.135 26 H 0.125 0.875 27 C -0.032 4.032 28 O -0.292 6.292 29 C -0.231 4.231 30 C -0.249 4.249 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.135 0.865 34 H 0.247 0.753 35 H 0.247 0.753 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.358 2.191 19.506 20.346 hybrid contribution 0.378 0.663 -0.335 0.833 sum -4.980 2.854 19.171 20.012 Atomic orbital electron populations 1.69808 1.05952 1.27173 1.47716 1.24948 0.94768 0.99116 0.93886 0.86678 0.79851 0.82807 0.78992 1.20125 1.21206 1.19716 1.20450 0.94368 0.88900 1.49992 0.91880 1.19152 0.94274 0.89221 0.93827 1.21218 0.98613 0.95748 0.80944 1.45670 1.11768 1.58866 1.13607 1.19738 0.86509 0.81663 0.84558 1.90681 1.17183 1.53684 1.81024 1.20621 0.86193 0.79635 0.84576 1.90743 1.16320 1.53529 1.78919 1.45713 1.11960 1.59739 1.18915 1.21539 0.95856 0.97866 0.84850 1.20494 0.95365 0.98834 0.93836 0.88712 1.22265 0.97700 0.95499 1.00160 1.23134 1.01192 0.97401 0.97679 1.22658 0.84654 0.95218 0.92651 0.86183 1.23480 0.98441 0.96797 0.99701 1.22877 0.96644 0.98301 0.95685 0.87532 1.23338 0.93099 0.84513 1.02245 1.88750 1.16067 1.29916 1.94507 1.22922 0.99104 1.06411 0.94686 1.22983 0.96886 1.01834 1.03178 0.92546 0.95012 0.86544 0.75264 0.75255 0.90584 0.90536 0.86908 0.86634 0.89351 0.89990 0.90700 0.90691 0.91438 0.90061 0.90437 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.35 10.82 55.43 0.60 -22.75 16 2 C 0.08 2.02 5.15 -17.82 -0.09 1.93 16 3 Si 0.89 20.75 29.56 -169.99 -5.02 15.73 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.50 -12.87 8.41 -34.44 -0.29 -13.16 16 8 H 0.06 1.63 7.84 -52.48 -0.41 1.22 16 9 C 0.04 0.84 1.94 -155.66 -0.30 0.54 16 10 C 0.16 3.63 4.79 -4.05 -0.02 3.62 16 11 N -0.65 -14.23 5.25 -60.73 -0.32 -14.55 16 12 C 0.50 10.24 7.88 -11.59 -0.09 10.14 16 13 O -0.55 -11.93 16.50 5.50 0.09 -11.84 16 14 C 0.51 9.19 7.89 -11.59 -0.09 9.09 16 15 O -0.52 -10.44 16.49 5.50 0.09 -10.35 16 16 N -0.71 -9.76 5.30 -60.73 -0.32 -10.08 16 17 C 0.12 1.36 4.53 -4.04 -0.02 1.34 16 18 C -0.07 -0.56 2.15 -91.83 -0.20 -0.76 16 19 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 20 C -0.14 -1.32 8.41 -35.98 -0.30 -1.62 16 21 C -0.18 -1.62 9.31 -35.20 -0.33 -1.95 16 22 C 0.11 0.88 4.99 -26.13 -0.13 0.75 16 23 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 24 C -0.15 -0.97 6.27 -24.07 -0.15 -1.12 16 25 C -0.12 -0.85 3.75 -88.32 -0.33 -1.18 16 26 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 27 C 0.04 0.41 6.79 37.83 0.26 0.67 16 28 O -0.37 -4.14 11.02 -35.23 -0.39 -4.53 16 29 C -0.19 -4.17 9.96 -26.69 -0.27 -4.43 16 30 C -0.21 -4.36 9.92 -26.69 -0.26 -4.63 16 31 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 32 H 0.03 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.12 3.05 6.04 -51.93 -0.31 2.73 16 34 H 0.41 9.06 7.59 -40.82 -0.31 8.75 16 35 H 0.41 5.18 7.46 -40.82 -0.30 4.88 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.96 6.16 -51.93 -0.32 0.64 16 38 H 0.11 1.15 7.62 -52.49 -0.40 0.75 16 39 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.09 0.52 7.92 -51.93 -0.41 0.11 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.78 5.48 -51.93 -0.28 0.50 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 45 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 46 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 47 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -29.81 380.37 -9.12 -38.93 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -6.96 Total: 14.48 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.62 Total: -0.77 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.04 Total: -47.38 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.21 Total: -26.72 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.81 -9.12 -38.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354777518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.776 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds