Wall clock time and date at job start Tue Mar 31 2020 21:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00036 * 2 1 4 4 H 1.48496 * 109.47565 * 240.00301 * 3 2 1 5 5 H 1.48504 * 109.47394 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46897 * 120.00606 * 3 2 1 7 7 C 1.37884 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99436 * 168.50408 * 7 2 1 9 9 C 1.50691 * 119.99840 * 348.50486 * 7 2 1 10 10 C 1.52999 * 115.55228 * 324.24656 * 9 7 2 11 11 N 1.46494 * 109.47360 * 305.96926 * 10 9 7 12 12 C 1.34780 * 120.00285 * 174.88533 * 11 10 9 13 13 O 1.21351 * 119.99771 * 5.10925 * 12 11 10 14 14 C 1.49447 * 120.00195 * 185.10934 * 12 11 10 15 15 O 1.21350 * 120.00093 * 354.70905 * 14 12 11 16 16 N 1.34778 * 120.00143 * 174.70310 * 14 12 11 17 17 C 1.46503 * 120.00059 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47051 * 180.02562 * 17 16 14 19 19 H 1.09000 * 109.25701 * 53.43619 * 18 17 16 20 20 C 1.50136 * 109.25738 * 293.95679 * 18 17 16 21 21 C 1.29873 * 124.17729 * 232.58846 * 20 18 17 22 22 C 1.51735 * 120.89439 * 0.66416 * 21 20 18 23 23 H 1.09001 * 113.84919 * 201.12227 * 22 21 20 24 24 C 1.55345 * 106.32144 * 326.46492 * 22 21 20 25 25 C 1.53413 * 109.25869 * 172.92217 * 18 17 16 26 26 H 1.09003 * 112.52172 * 291.37861 * 25 18 17 27 27 C 1.54279 * 108.97344 * 57.08057 * 25 18 17 28 28 O 1.43373 * 107.49781 * 92.15544 * 27 25 18 29 29 C 1.53005 * 117.50107 * 109.92462 * 9 7 2 30 30 C 1.53004 * 117.49836 * 178.58374 * 9 7 2 31 31 H 0.96997 * 119.99865 * 5.03306 * 1 2 3 32 32 H 1.08998 * 109.47399 * 185.96550 * 10 9 7 33 33 H 1.08999 * 109.46732 * 65.96658 * 10 9 7 34 34 H 0.97001 * 119.99787 * 354.87622 * 11 10 9 35 35 H 0.96999 * 119.99724 * 0.02562 * 16 14 12 36 36 H 1.09004 * 109.46824 * 300.00578 * 17 16 14 37 37 H 1.08993 * 109.46818 * 60.00635 * 17 16 14 38 38 H 1.08000 * 117.93406 * 52.59239 * 20 18 17 39 39 H 1.08004 * 119.56122 * 180.63333 * 21 20 18 40 40 H 1.08999 * 111.44792 * 311.14227 * 24 22 21 41 41 H 1.08996 * 111.43961 * 186.15039 * 24 22 21 42 42 H 1.09007 * 109.84508 * 211.64287 * 27 25 18 43 43 H 1.09004 * 109.84372 * 332.55887 * 27 25 18 44 44 H 1.08999 * 117.50061 * 215.00008 * 29 9 7 45 45 H 1.09001 * 117.49338 * 0.02562 * 29 9 7 46 46 H 1.09003 * 117.49809 * 359.97326 * 30 9 7 47 47 H 1.08994 * 117.50419 * 144.97166 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0683 -1.2034 -0.1870 9 6 1.2737 -2.4861 0.2590 10 6 0.1324 -2.4062 1.2749 11 7 0.6315 -1.8294 2.5256 12 6 -0.2227 -1.5662 3.5344 13 8 -1.3882 -1.8917 3.4431 14 6 0.2655 -0.8736 4.7654 15 8 1.4476 -0.6340 4.8985 16 7 -0.6073 -0.5148 5.7278 17 6 -0.1286 0.1637 6.9348 18 6 -1.3126 0.4569 7.8585 19 1 -1.8642 -0.4655 8.0397 20 6 -2.2198 1.4550 7.1989 21 6 -2.6190 2.5579 7.7564 22 6 -2.1673 2.9315 9.1559 23 1 -2.8186 3.6512 9.6519 24 6 -2.0213 1.5973 9.9382 25 6 -0.7899 1.0045 9.1928 26 1 -0.2546 0.2520 9.7720 27 6 0.0620 2.2615 8.9199 28 8 -0.8063 3.3988 9.0104 29 6 1.1073 -3.4520 -0.9159 30 6 2.0884 -3.7804 0.2123 31 1 -0.4850 0.8368 -0.0737 32 1 -0.2551 -3.4070 1.4655 33 1 -0.6644 -1.7776 0.8774 34 1 1.5767 -1.6370 2.6277 35 1 -1.5522 -0.7066 5.6216 36 1 0.5858 -0.4766 7.4524 37 1 0.3566 1.0994 6.6573 38 1 -2.5626 1.2424 6.1970 39 1 -3.2812 3.2186 7.2163 40 1 -2.9018 0.9663 9.8177 41 1 -1.8024 1.7748 10.9911 42 1 0.8542 2.3405 9.6646 43 1 0.4969 2.2043 7.9220 44 1 0.1848 -4.0305 -0.9652 45 1 1.5269 -3.1530 -1.8765 46 1 3.1530 -3.6973 -0.0066 47 1 1.8117 -4.5747 0.9054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354777518.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:20 Heat of formation + Delta-G solvation = -83.584951 kcal Electronic energy + Delta-G solvation = -29081.529060 eV Core-core repulsion = 25036.876722 eV Total energy + Delta-G solvation = -4044.652339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.08988 -41.42677 -39.63719 -38.44233 -37.16509 -35.29781 -34.61675 -34.16228 -32.94148 -31.20862 -28.82806 -27.99487 -27.42325 -25.86837 -24.40297 -23.03538 -22.84586 -21.79904 -21.25919 -21.06893 -19.70505 -19.46198 -18.20260 -18.06589 -17.80500 -17.16813 -16.81830 -16.59457 -16.24037 -16.19397 -15.65363 -15.46604 -15.26719 -15.05080 -14.84137 -14.54567 -14.39441 -14.20327 -13.84819 -13.59062 -13.49829 -13.29566 -13.13328 -12.89806 -12.74940 -12.71664 -12.47371 -12.35776 -12.16791 -12.05257 -11.67373 -11.46035 -11.37065 -11.11794 -10.69939 -10.58285 -10.52812 -10.30692 -10.17473 -10.15649 -9.83413 -8.09120 -6.21095 0.43086 1.12233 1.37109 1.42272 1.43356 1.46568 2.24503 2.37245 2.74293 3.01016 3.03277 3.31378 3.49868 3.56052 3.67960 3.74532 3.89879 3.95131 4.01085 4.20628 4.22363 4.25198 4.46140 4.49985 4.52200 4.65128 4.69283 4.75947 4.78532 4.83240 4.89635 4.97633 5.05359 5.06018 5.07275 5.09563 5.16962 5.26600 5.46222 5.55084 5.55560 5.58963 5.79671 5.88156 5.95728 6.00857 6.33748 6.51165 6.76925 6.83578 7.10078 7.41557 8.86810 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.002819 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.365695 B = 9928.954478 C =10699.281267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.042 3.958 3 Si 0.935 3.065 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.508 4.508 8 H 0.057 0.943 9 C 0.004 3.996 10 C 0.169 3.831 11 N -0.656 5.656 12 C 0.492 3.508 13 O -0.561 6.561 14 C 0.511 3.489 15 O -0.544 6.544 16 N -0.688 5.688 17 C 0.120 3.880 18 C -0.057 4.057 19 H 0.114 0.886 20 C -0.151 4.151 21 C -0.179 4.179 22 C 0.097 3.903 23 H 0.137 0.863 24 C -0.137 4.137 25 C -0.109 4.109 26 H 0.132 0.868 27 C 0.037 3.963 28 O -0.400 6.400 29 C -0.191 4.191 30 C -0.186 4.186 31 H 0.259 0.741 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.410 0.590 35 H 0.418 0.582 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.328 1.218 21.473 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.160 4.160 3 Si 0.761 3.239 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.004 3.996 10 C 0.046 3.954 11 N -0.304 5.304 12 C 0.273 3.727 13 O -0.442 6.442 14 C 0.292 3.708 15 O -0.422 6.422 16 N -0.341 5.341 17 C -0.002 4.002 18 C -0.076 4.076 19 H 0.132 0.868 20 C -0.169 4.169 21 C -0.198 4.198 22 C 0.041 3.959 23 H 0.154 0.846 24 C -0.175 4.175 25 C -0.128 4.128 26 H 0.149 0.851 27 C -0.039 4.039 28 O -0.320 6.320 29 C -0.229 4.229 30 C -0.223 4.223 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.245 0.755 35 H 0.256 0.744 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.385 1.524 21.515 22.231 hybrid contribution 0.346 0.890 -0.959 1.353 sum -5.040 2.414 20.556 21.302 Atomic orbital electron populations 1.69943 1.06765 1.27125 1.48973 1.25444 0.95259 1.01238 0.94053 0.85960 0.78814 0.80211 0.78868 1.19444 1.21553 1.20056 1.20670 0.94218 0.90185 1.49491 0.92480 1.19205 0.95530 0.89610 0.95281 1.20926 0.97702 0.95413 0.81404 1.45646 1.11794 1.59280 1.13633 1.20223 0.86161 0.81183 0.85181 1.90660 1.17729 1.54198 1.81581 1.20153 0.86275 0.79918 0.84497 1.90733 1.17153 1.54940 1.79326 1.45704 1.11755 1.58056 1.18605 1.21760 0.97371 0.97064 0.84000 1.20478 0.94075 0.99345 0.93675 0.86810 1.22323 0.98442 0.96220 0.99906 1.23318 1.00886 0.97053 0.98495 1.22925 0.83779 0.96829 0.92399 0.84585 1.23477 0.98363 0.95511 1.00106 1.22927 0.96851 0.97886 0.95126 0.85057 1.23433 0.93661 0.85204 1.01646 1.88725 1.17403 1.31270 1.94588 1.22927 1.00125 1.05640 0.94215 1.22990 0.96834 1.00207 1.02317 0.93102 0.94134 0.89743 0.75472 0.74441 0.89308 0.91978 0.88152 0.86730 0.88204 0.88411 0.89491 0.92555 0.90092 0.90625 0.89908 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.61 10.82 21.45 0.23 -48.38 16 2 C 0.04 2.21 5.15 84.66 0.44 2.65 16 3 Si 0.93 42.89 29.56 68.60 2.03 44.92 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.51 -26.18 8.41 25.60 0.22 -25.97 16 8 H 0.06 2.94 7.84 -2.91 -0.02 2.92 16 9 C 0.00 0.21 1.94 -52.93 -0.10 0.10 16 10 C 0.17 7.82 4.79 86.38 0.41 8.23 16 11 N -0.66 -28.83 5.25 -464.42 -2.44 -31.27 16 12 C 0.49 20.38 7.88 87.27 0.69 21.07 16 13 O -0.56 -24.56 16.50 -3.25 -0.05 -24.62 16 14 C 0.51 18.35 7.89 87.27 0.69 19.04 16 15 O -0.54 -21.77 16.49 -3.25 -0.05 -21.83 16 16 N -0.69 -18.38 5.30 -464.41 -2.46 -20.84 16 17 C 0.12 2.52 4.53 86.38 0.39 2.91 16 18 C -0.06 -0.85 2.15 -11.58 -0.02 -0.88 16 19 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 20 C -0.15 -2.74 8.41 26.63 0.22 -2.52 16 21 C -0.18 -3.15 9.31 27.14 0.25 -2.90 16 22 C 0.10 1.46 4.99 30.98 0.15 1.61 16 23 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 24 C -0.14 -1.39 6.27 32.32 0.20 -1.18 16 25 C -0.11 -1.29 3.75 -9.30 -0.03 -1.33 16 26 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 27 C 0.04 0.63 6.79 72.42 0.49 1.12 16 28 O -0.40 -8.47 11.02 -148.98 -1.64 -10.12 16 29 C -0.19 -8.02 9.96 30.62 0.30 -7.71 16 30 C -0.19 -7.33 9.92 30.62 0.30 -7.03 16 31 H 0.26 13.92 8.32 -92.71 -0.77 13.14 16 32 H 0.04 1.77 8.09 -2.39 -0.02 1.75 16 33 H 0.08 4.51 6.04 -2.39 -0.01 4.49 16 34 H 0.41 18.19 7.59 -92.71 -0.70 17.49 16 35 H 0.42 10.15 7.46 -92.71 -0.69 9.46 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.54 6.16 -2.39 -0.01 1.52 16 38 H 0.10 2.04 7.62 -2.91 -0.02 2.02 16 39 H 0.11 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.10 0.82 7.92 -2.39 -0.02 0.80 16 41 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.06 1.16 5.48 -2.39 -0.01 1.15 16 44 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 47 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -63.96 380.37 -0.17 -64.14 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: -0.39 Total: 40.78 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 4.60 Total: 7.22 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -4.67 Total: -100.50 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: -1.75 Total: -56.56 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -63.96 -0.17 -64.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354777518.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.449 kcal (2) G-P(sol) polarization free energy of solvation -63.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds