Wall clock time and date at job start Tue Mar 31 2020 17:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00023 * 2 1 4 4 N 1.46499 * 109.47406 * 124.99631 * 3 2 1 5 5 C 1.36735 * 127.13480 * 89.97574 * 4 3 2 6 6 C 1.50699 * 126.34764 * 359.97438 * 5 4 3 7 7 C 1.53007 * 109.46826 * 269.99428 * 6 5 4 8 8 C 1.50699 * 109.46826 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00378 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99735 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99784 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 119.99965 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47338 * 90.00459 * 12 10 8 14 14 H 1.48511 * 109.47039 * 209.99957 * 12 10 8 15 15 H 1.48500 * 109.47352 * 330.00010 * 12 10 8 16 16 N 1.30294 * 107.30568 * 179.97438 * 5 4 3 17 17 N 1.28530 * 110.05622 * 0.02562 * 16 5 4 18 18 C 1.31221 * 109.85675 * 359.97438 * 17 16 5 19 19 N 1.38582 * 126.47333 * 179.97438 * 18 17 16 20 20 C 1.48598 * 110.99636 * 115.43525 * 19 18 17 21 21 C 1.54454 * 104.50070 * 201.14221 * 20 19 18 22 22 H 1.08998 * 110.03631 * 265.14058 * 21 20 19 23 23 C 1.53888 * 108.80235 * 144.51432 * 21 20 19 24 24 S 1.83911 * 102.72177 * 219.28585 * 23 21 20 25 25 C 1.83906 * 94.80265 * 34.65803 * 24 23 21 26 26 C 1.53500 * 105.21365 * 23.76909 * 21 20 19 27 27 H 1.09000 * 110.14382 * 241.33492 * 26 21 20 28 28 C 1.48588 * 111.00001 * 0.02562 * 19 18 17 29 29 H 1.08000 * 119.99908 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00258 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00457 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.46843 * 4.99481 * 3 2 1 33 33 H 1.09003 * 109.46890 * 244.99972 * 3 2 1 34 34 H 1.08995 * 109.47753 * 29.99689 * 6 5 4 35 35 H 1.09006 * 109.47027 * 150.00207 * 6 5 4 36 36 H 1.08997 * 109.47278 * 300.00090 * 7 6 5 37 37 H 1.09006 * 109.46681 * 60.00567 * 7 6 5 38 38 H 0.96997 * 119.99707 * 179.97438 * 11 10 8 39 39 H 1.09000 * 110.42962 * 319.89808 * 20 19 18 40 40 H 1.09000 * 110.42503 * 82.38987 * 20 19 18 41 41 H 1.09000 * 110.81877 * 100.95545 * 23 21 20 42 42 H 1.08998 * 110.87725 * 337.63943 * 23 21 20 43 43 H 1.08999 * 110.76465 * 206.97192 * 25 24 23 44 44 H 1.09007 * 110.92243 * 83.66930 * 25 24 23 45 45 H 1.09008 * 110.42699 * 277.61120 * 28 19 18 46 46 H 1.08998 * 110.43183 * 40.09306 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.2910 0.9002 1.1439 6 6 5.0436 0.2995 -0.0153 7 6 4.8568 -1.2191 -0.0125 8 6 5.6100 -1.8199 -1.1714 9 1 6.1665 -1.1825 -1.8424 10 6 5.5885 -3.1834 -1.3749 11 7 6.2461 -3.7078 -2.3860 12 14 4.6265 -4.2860 -0.2138 13 1 3.2370 -4.4397 -0.7146 14 1 5.2776 -5.6189 -0.1437 15 1 4.6001 -3.6761 1.1399 16 7 4.7560 1.1044 2.3438 17 7 3.8475 1.6313 3.0848 18 6 2.7453 1.7933 2.3914 19 7 1.5537 2.3305 2.8519 20 6 1.2354 3.6004 2.1490 21 6 0.2527 4.3287 3.0922 22 1 -0.7748 4.1157 2.7977 23 6 0.5206 5.8421 3.0148 24 16 0.3247 6.3780 4.7632 25 6 1.0177 4.8312 5.4769 26 6 0.5328 3.7537 4.4876 27 1 -0.3584 3.2611 4.8764 28 6 1.6634 2.7221 4.2811 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 4.6611 0.7109 -0.9493 35 1 6.1037 0.5353 0.0784 36 1 5.2395 -1.6306 0.9214 37 1 3.7967 -1.4549 -0.1063 38 1 6.2313 -4.6670 -2.5289 39 1 2.1385 4.1942 2.0084 40 1 0.7604 3.3954 1.1896 41 1 -0.2133 6.3332 2.3757 42 1 1.5324 6.0400 2.6612 43 1 0.6141 4.6507 6.4732 44 1 2.1068 4.8688 5.5039 45 1 1.5105 1.8564 4.9256 46 1 2.6342 3.1769 4.4776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355947986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:52 Heat of formation + Delta-G solvation = 110.801603 kcal Electronic energy + Delta-G solvation = -26999.675629 eV Core-core repulsion = 23438.498146 eV Total energy + Delta-G solvation = -3561.177483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 25.46 seconds Orbital eigenvalues (eV) -42.83909 -39.98196 -36.24349 -34.96887 -33.90910 -32.69297 -31.78967 -31.68073 -29.09754 -27.12264 -26.71797 -26.16391 -25.27545 -22.90379 -21.69385 -20.88643 -20.77130 -19.81973 -19.37404 -17.57016 -17.25565 -16.85645 -16.43478 -16.16976 -15.99858 -15.31835 -15.00109 -14.44154 -14.32432 -14.05567 -13.58694 -13.52808 -13.33963 -13.16487 -12.94136 -12.81426 -12.67518 -12.39440 -12.34300 -11.86390 -11.72178 -11.65472 -11.50279 -11.38423 -11.12962 -11.05155 -10.73994 -10.36316 -10.20823 -10.12423 -10.02095 -9.83296 -9.63317 -9.57402 -9.32573 -8.62094 -8.18946 -8.16304 -6.13020 -4.12427 1.40603 1.75399 1.84149 1.97913 2.56218 3.07714 3.23885 3.33805 3.39625 3.51557 3.84303 4.08059 4.10353 4.29358 4.38153 4.46774 4.57554 4.66603 4.67769 4.73102 4.81479 4.92978 5.01025 5.07087 5.10610 5.14169 5.20866 5.24091 5.28341 5.30635 5.44940 5.50215 5.56579 5.71800 5.75772 5.93014 6.14782 6.21369 6.28798 6.41324 6.46364 6.55418 6.71739 7.10229 7.20715 7.27259 7.65971 8.40959 8.90108 9.01512 9.48717 10.99866 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.023092 B = 0.002777 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.232005 B =10082.215007 C =10392.823817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.173 4.173 3 C 0.139 3.861 4 N -0.473 5.473 5 C 0.210 3.790 6 C -0.022 4.022 7 C -0.003 4.003 8 C -0.523 4.523 9 H 0.076 0.924 10 C 0.072 3.928 11 N -0.899 5.899 12 Si 0.874 3.126 13 H -0.277 1.277 14 H -0.285 1.285 15 H -0.264 1.264 16 N -0.292 5.292 17 N -0.320 5.320 18 C 0.326 3.674 19 N -0.424 5.424 20 C 0.037 3.963 21 C -0.088 4.088 22 H 0.102 0.898 23 C -0.062 4.062 24 S -0.295 6.295 25 C -0.061 4.061 26 C -0.093 4.093 27 H 0.102 0.898 28 C 0.058 3.942 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.025 0.975 37 H 0.010 0.990 38 H 0.264 0.736 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.908 18.222 9.676 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.191 4.191 3 C 0.017 3.983 4 N -0.167 5.167 5 C -0.057 4.057 6 C -0.062 4.062 7 C -0.042 4.042 8 C -0.561 4.561 9 H 0.094 0.906 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.701 3.299 13 H -0.203 1.203 14 H -0.211 1.211 15 H -0.189 1.189 16 N -0.131 5.131 17 N -0.164 5.164 18 C -0.031 4.031 19 N -0.147 5.147 20 C -0.091 4.091 21 C -0.109 4.109 22 H 0.121 0.879 23 C -0.211 4.211 24 S -0.067 6.067 25 C -0.209 4.209 26 C -0.114 4.114 27 H 0.120 0.880 28 C -0.071 4.071 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.141 0.859 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.043 0.957 37 H 0.028 0.972 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.740 18.748 11.193 27.514 hybrid contribution -0.478 -1.420 -1.027 1.817 sum -17.218 17.328 10.167 26.459 Atomic orbital electron populations 1.23818 0.95366 1.02104 0.98789 1.23197 0.96376 0.98413 1.01139 1.21002 0.91700 0.97402 0.88232 1.46244 1.12300 1.47953 1.10232 1.25622 0.81830 0.99815 0.98436 1.20242 0.98755 0.97850 0.89356 1.19572 0.96716 0.89313 0.98570 1.20999 1.31326 0.92800 1.10938 0.90603 1.24952 0.95028 0.98036 0.94968 1.69896 1.42186 1.12234 1.29378 0.86867 0.80281 0.80350 0.82418 1.20319 1.21123 1.18894 1.74021 1.22542 1.16515 0.99984 1.74489 0.96323 1.19706 1.25848 1.22586 0.92766 1.03802 0.83897 1.62222 1.23132 1.23994 1.05399 1.23559 0.98724 0.88679 0.98172 1.22374 1.01209 0.92542 0.94734 0.87943 1.24229 1.05687 0.96180 0.94991 1.88079 1.83799 1.28675 1.06118 1.24291 1.03655 0.91460 1.01511 1.22474 0.99686 0.95748 0.93463 0.87961 1.23302 0.98309 0.98799 0.86662 0.87807 0.88507 0.85869 0.88874 0.87456 0.90675 0.88651 0.95690 0.97180 0.92575 0.92167 0.89092 0.87310 0.88960 0.87231 0.88623 0.88591 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 14.32 29.02 0.42 -1.27 16 2 C -0.17 -2.22 9.85 -36.03 -0.35 -2.57 16 3 C 0.14 1.64 6.39 -5.20 -0.03 1.61 16 4 N -0.47 -7.23 2.79 -115.37 -0.32 -7.55 16 5 C 0.21 3.87 7.32 -154.02 -1.13 2.75 16 6 C -0.02 -0.42 5.53 -27.88 -0.15 -0.58 16 7 C 0.00 -0.07 4.02 -27.88 -0.11 -0.19 16 8 C -0.52 -14.20 9.66 -34.44 -0.33 -14.53 16 9 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 10 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 11 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 12 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 16 N -0.29 -5.94 12.18 32.99 0.40 -5.54 16 17 N -0.32 -5.86 10.98 30.32 0.33 -5.53 16 18 C 0.33 4.97 6.99 -318.87 -2.23 2.74 16 19 N -0.42 -4.80 5.42 -169.95 -0.92 -5.72 16 20 C 0.04 0.31 5.41 -2.12 -0.01 0.29 16 21 C -0.09 -0.56 3.43 -89.14 -0.31 -0.87 16 22 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 23 C -0.06 -0.39 6.94 37.62 0.26 -0.13 16 24 S -0.29 -2.44 23.26 -107.50 -2.50 -4.94 16 25 C -0.06 -0.41 6.95 37.74 0.26 -0.15 16 26 C -0.09 -0.64 3.45 -89.03 -0.31 -0.95 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 C 0.06 0.56 5.60 -2.14 -0.01 0.55 16 29 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.10 0.78 7.84 -52.49 -0.41 0.37 16 31 H 0.12 1.94 6.62 -52.49 -0.35 1.59 16 32 H 0.09 0.83 5.22 -51.93 -0.27 0.56 16 33 H 0.11 1.19 7.25 -51.93 -0.38 0.81 16 34 H 0.07 1.28 7.27 -51.93 -0.38 0.90 16 35 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 36 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 37 H 0.01 0.23 6.13 -51.93 -0.32 -0.09 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.06 0.55 7.16 -51.93 -0.37 0.18 16 40 H 0.09 0.63 6.14 -51.93 -0.32 0.31 16 41 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.60 7.31 -51.93 -0.38 0.22 16 43 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.10 0.69 7.31 -51.93 -0.38 0.31 16 45 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 46 H 0.08 0.84 6.61 -51.93 -0.34 0.50 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -33.04 373.39 -12.23 -45.28 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.81 Total: -0.89 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -4.14 Total: -11.35 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.26 Total: -50.51 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: -2.44 SS G_CDS: -2.50 Total: -4.94 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.04 -12.23 -45.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355947986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.078 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 25.46 seconds