Wall clock time and date at job start Tue Mar 31 2020 17:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00023 * 2 1 4 4 N 1.46499 * 109.47406 * 124.99631 * 3 2 1 5 5 C 1.36735 * 127.13480 * 89.97574 * 4 3 2 6 6 C 1.50699 * 126.34764 * 359.97438 * 5 4 3 7 7 C 1.53007 * 109.46826 * 269.99428 * 6 5 4 8 8 C 1.50699 * 109.46826 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00378 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99735 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99784 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 119.99965 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47338 * 90.00459 * 12 10 8 14 14 H 1.48511 * 109.47039 * 209.99957 * 12 10 8 15 15 H 1.48500 * 109.47352 * 330.00010 * 12 10 8 16 16 N 1.30294 * 107.30568 * 179.97438 * 5 4 3 17 17 N 1.28530 * 110.05622 * 0.02562 * 16 5 4 18 18 C 1.31221 * 109.85675 * 359.97438 * 17 16 5 19 19 N 1.38582 * 126.47333 * 179.97438 * 18 17 16 20 20 C 1.48598 * 110.99636 * 115.43525 * 19 18 17 21 21 C 1.54454 * 104.50070 * 201.14221 * 20 19 18 22 22 H 1.08998 * 110.03631 * 265.14058 * 21 20 19 23 23 C 1.53888 * 108.80235 * 144.51432 * 21 20 19 24 24 S 1.83911 * 102.72177 * 219.28585 * 23 21 20 25 25 C 1.83906 * 94.80265 * 34.65803 * 24 23 21 26 26 C 1.53500 * 105.21365 * 23.76909 * 21 20 19 27 27 H 1.09000 * 110.14382 * 241.33492 * 26 21 20 28 28 C 1.48588 * 111.00001 * 0.02562 * 19 18 17 29 29 H 1.08000 * 119.99908 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00258 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00457 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.46843 * 4.99481 * 3 2 1 33 33 H 1.09003 * 109.46890 * 244.99972 * 3 2 1 34 34 H 1.08995 * 109.47753 * 29.99689 * 6 5 4 35 35 H 1.09006 * 109.47027 * 150.00207 * 6 5 4 36 36 H 1.08997 * 109.47278 * 300.00090 * 7 6 5 37 37 H 1.09006 * 109.46681 * 60.00567 * 7 6 5 38 38 H 0.96997 * 119.99707 * 179.97438 * 11 10 8 39 39 H 1.09000 * 110.42962 * 319.89808 * 20 19 18 40 40 H 1.09000 * 110.42503 * 82.38987 * 20 19 18 41 41 H 1.09000 * 110.81877 * 100.95545 * 23 21 20 42 42 H 1.08998 * 110.87725 * 337.63943 * 23 21 20 43 43 H 1.08999 * 110.76465 * 206.97192 * 25 24 23 44 44 H 1.09007 * 110.92243 * 83.66930 * 25 24 23 45 45 H 1.09008 * 110.42699 * 277.61120 * 28 19 18 46 46 H 1.08998 * 110.43183 * 40.09306 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.2910 0.9002 1.1439 6 6 5.0436 0.2995 -0.0153 7 6 4.8568 -1.2191 -0.0125 8 6 5.6100 -1.8199 -1.1714 9 1 6.1665 -1.1825 -1.8424 10 6 5.5885 -3.1834 -1.3749 11 7 6.2461 -3.7078 -2.3860 12 14 4.6265 -4.2860 -0.2138 13 1 3.2370 -4.4397 -0.7146 14 1 5.2776 -5.6189 -0.1437 15 1 4.6001 -3.6761 1.1399 16 7 4.7560 1.1044 2.3438 17 7 3.8475 1.6313 3.0848 18 6 2.7453 1.7933 2.3914 19 7 1.5537 2.3305 2.8519 20 6 1.2354 3.6004 2.1490 21 6 0.2527 4.3287 3.0922 22 1 -0.7748 4.1157 2.7977 23 6 0.5206 5.8421 3.0148 24 16 0.3247 6.3780 4.7632 25 6 1.0177 4.8312 5.4769 26 6 0.5328 3.7537 4.4876 27 1 -0.3584 3.2611 4.8764 28 6 1.6634 2.7221 4.2811 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 4.6611 0.7109 -0.9493 35 1 6.1037 0.5353 0.0784 36 1 5.2395 -1.6306 0.9214 37 1 3.7967 -1.4549 -0.1063 38 1 6.2313 -4.6670 -2.5289 39 1 2.1385 4.1942 2.0084 40 1 0.7604 3.3954 1.1896 41 1 -0.2133 6.3332 2.3757 42 1 1.5324 6.0400 2.6612 43 1 0.6141 4.6507 6.4732 44 1 2.1068 4.8688 5.5039 45 1 1.5105 1.8564 4.9256 46 1 2.6342 3.1769 4.4776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355947986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:26 Heat of formation + Delta-G solvation = 93.168670 kcal Electronic energy + Delta-G solvation = -27000.440251 eV Core-core repulsion = 23438.498146 eV Total energy + Delta-G solvation = -3561.942104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.09372 -40.72895 -37.32318 -36.25159 -35.28693 -34.01069 -33.39910 -32.30863 -30.52676 -28.19838 -27.51267 -27.23718 -26.52200 -23.69001 -23.35978 -22.05217 -21.91418 -20.72979 -20.25976 -19.11226 -18.33688 -17.97475 -17.37384 -17.05879 -16.99007 -16.37059 -16.17299 -15.85299 -15.36148 -15.09544 -14.85192 -14.73576 -14.67489 -14.33400 -13.95922 -13.64234 -13.53935 -13.43636 -13.24108 -13.01767 -12.88632 -12.71909 -12.55215 -12.35155 -12.31335 -12.19936 -12.00504 -11.85884 -11.67390 -11.57145 -11.44529 -11.17005 -10.95101 -10.79527 -10.68352 -10.51646 -9.40650 -8.78673 -8.32674 -6.35892 0.65876 0.85503 0.94196 1.25686 1.27664 1.33243 1.43626 1.54757 1.74611 2.30854 2.60355 3.02592 3.18785 3.39503 3.48407 3.50261 3.57691 3.75034 3.80339 3.95725 4.03766 4.06821 4.13666 4.18626 4.22741 4.35949 4.43985 4.49056 4.52462 4.59459 4.63582 4.63797 4.75364 4.81363 4.88372 4.91557 4.92906 4.98137 5.09136 5.24709 5.33054 5.39208 5.43501 5.58681 5.59438 5.69475 6.10880 6.22234 6.70923 7.28510 7.69634 8.83337 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.023092 B = 0.002777 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.232005 B =10082.215007 C =10392.823817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.208 4.208 3 C 0.135 3.865 4 N -0.468 5.468 5 C 0.197 3.803 6 C -0.010 4.010 7 C 0.007 3.993 8 C -0.525 4.525 9 H 0.049 0.951 10 C 0.017 3.983 11 N -0.942 5.942 12 Si 0.935 3.065 13 H -0.261 1.261 14 H -0.282 1.282 15 H -0.265 1.265 16 N -0.329 5.329 17 N -0.356 5.356 18 C 0.347 3.653 19 N -0.422 5.422 20 C 0.037 3.963 21 C -0.078 4.078 22 H 0.125 0.875 23 C -0.051 4.051 24 S -0.338 6.338 25 C -0.052 4.052 26 C -0.082 4.082 27 H 0.118 0.882 28 C 0.056 3.944 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.005 0.995 37 H 0.019 0.981 38 H 0.267 0.733 39 H 0.051 0.949 40 H 0.114 0.886 41 H 0.128 0.872 42 H 0.089 0.911 43 H 0.122 0.878 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.594 19.454 10.033 30.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.227 4.227 3 C 0.015 3.985 4 N -0.162 5.162 5 C -0.072 4.072 6 C -0.050 4.050 7 C -0.032 4.032 8 C -0.563 4.563 9 H 0.067 0.933 10 C -0.181 4.181 11 N -0.582 5.582 12 Si 0.760 3.240 13 H -0.186 1.186 14 H -0.208 1.208 15 H -0.190 1.190 16 N -0.167 5.167 17 N -0.200 5.200 18 C -0.011 4.011 19 N -0.146 5.146 20 C -0.091 4.091 21 C -0.099 4.099 22 H 0.143 0.857 23 C -0.199 4.199 24 S -0.110 6.110 25 C -0.200 4.200 26 C -0.103 4.103 27 H 0.136 0.864 28 C -0.072 4.072 29 H 0.126 0.874 30 H 0.148 0.852 31 H 0.104 0.896 32 H 0.147 0.853 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.023 0.977 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.132 0.868 41 H 0.146 0.854 42 H 0.107 0.893 43 H 0.140 0.860 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.448 20.003 11.545 30.847 hybrid contribution 0.595 -1.727 -1.137 2.151 sum -19.853 18.277 10.408 28.922 Atomic orbital electron populations 1.24106 0.94352 1.03886 0.94622 1.23011 0.97314 0.97337 1.05058 1.21323 0.91729 0.98260 0.87186 1.46367 1.11638 1.47040 1.11131 1.25205 0.83346 1.01027 0.97653 1.19947 0.98826 0.95278 0.90955 1.19383 0.96260 0.91926 0.95626 1.21291 1.30798 0.92753 1.11415 0.93276 1.25759 0.96162 0.99683 0.96474 1.70020 1.44102 1.12766 1.31334 0.85882 0.79627 0.78331 0.80169 1.18551 1.20754 1.18959 1.73914 1.24270 1.17523 1.00990 1.74402 0.97380 1.21542 1.26640 1.22991 0.92952 1.01798 0.83354 1.62387 1.20254 1.25562 1.06428 1.23714 0.99002 0.87054 0.99327 1.22393 1.01761 0.92148 0.93601 0.85680 1.24273 1.06196 0.96027 0.93414 1.88275 1.83863 1.30284 1.08541 1.24280 1.03163 0.90447 1.02159 1.22468 0.98912 0.94851 0.94051 0.86377 1.23340 0.98758 0.99327 0.85799 0.87431 0.85186 0.89584 0.85278 0.87001 0.88653 0.89481 0.97669 0.96259 0.92356 0.93063 0.86849 0.85356 0.89284 0.85974 0.89420 0.89138 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 14.32 67.78 0.97 -1.24 16 2 C -0.21 -4.90 9.85 25.65 0.25 -4.64 16 3 C 0.14 2.85 6.39 85.63 0.55 3.40 16 4 N -0.47 -13.71 2.79 -518.91 -1.45 -15.16 16 5 C 0.20 7.28 7.32 137.64 1.01 8.29 16 6 C -0.01 -0.40 5.53 29.85 0.16 -0.24 16 7 C 0.01 0.31 4.02 29.85 0.12 0.43 16 8 C -0.52 -29.22 9.66 25.60 0.25 -28.97 16 9 H 0.05 2.93 7.99 -2.91 -0.02 2.90 16 10 C 0.02 0.99 5.47 84.65 0.46 1.45 16 11 N -0.94 -57.71 13.96 21.45 0.30 -57.41 16 12 Si 0.94 44.69 27.47 68.60 1.88 46.57 16 13 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 14 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 15 H -0.27 -12.59 6.54 99.48 0.65 -11.94 16 16 N -0.33 -13.63 12.18 -49.54 -0.60 -14.23 16 17 N -0.36 -13.14 10.98 -58.00 -0.64 -13.78 16 18 C 0.35 10.13 6.99 260.11 1.82 11.95 16 19 N -0.42 -8.47 5.42 -691.61 -3.75 -12.22 16 20 C 0.04 0.47 5.41 86.47 0.47 0.94 16 21 C -0.08 -0.69 3.43 -9.83 -0.03 -0.73 16 22 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 23 C -0.05 -0.48 6.94 72.28 0.50 0.03 16 24 S -0.34 -4.92 23.26 -56.49 -1.31 -6.24 16 25 C -0.05 -0.62 6.95 72.36 0.50 -0.11 16 26 C -0.08 -0.90 3.45 -9.76 -0.03 -0.93 16 27 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 28 C 0.06 1.00 5.60 86.46 0.48 1.48 16 29 H 0.11 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.13 1.32 7.84 -2.91 -0.02 1.30 16 31 H 0.09 2.68 6.62 -2.91 -0.02 2.66 16 32 H 0.13 1.71 5.22 -2.39 -0.01 1.70 16 33 H 0.11 2.24 7.25 -2.39 -0.02 2.22 16 34 H 0.10 3.23 7.27 -2.39 -0.02 3.21 16 35 H 0.09 3.47 8.14 -2.38 -0.02 3.45 16 36 H 0.00 0.25 7.20 -2.39 -0.02 0.23 16 37 H 0.02 0.87 6.13 -2.38 -0.01 0.86 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.05 0.80 7.16 -2.39 -0.02 0.78 16 40 H 0.11 0.96 6.14 -2.39 -0.01 0.95 16 41 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.92 7.31 -2.39 -0.02 0.91 16 43 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.09 1.19 7.31 -2.38 -0.02 1.17 16 45 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 46 H 0.06 1.29 6.61 -2.39 -0.02 1.28 16 Total: -1.00 -74.63 373.39 2.84 -71.79 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.93 Total: 9.57 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 7.48 Total: -8.90 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -6.14 Total: -112.80 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -1.31 Total: -6.24 kcal Total: -74.63 2.84 -71.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355947986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.959 kcal (2) G-P(sol) polarization free energy of solvation -74.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds