Wall clock time and date at job start Tue Mar 31 2020 23:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99729 * 2 1 4 4 H 1.48498 * 109.47282 * 270.00166 * 3 2 1 5 5 H 1.48501 * 109.47122 * 30.00272 * 3 2 1 6 6 H 1.48502 * 109.46711 * 149.99968 * 3 2 1 7 7 C 1.37868 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47482 * 180.02562 * 9 7 2 11 11 C 1.38274 * 119.93502 * 89.99647 * 10 9 7 12 12 C 1.38110 * 120.07442 * 180.02562 * 11 10 9 13 13 C 1.38869 * 119.92875 * 0.02562 * 12 11 10 14 14 N 1.39945 * 120.07138 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99752 * 146.84258 * 14 13 12 16 16 O 1.21583 * 120.00141 * 354.69312 * 15 14 13 17 17 N 1.34777 * 119.99411 * 174.68748 * 15 14 13 18 18 C 1.46498 * 119.99657 * 180.02562 * 17 15 14 19 19 H 1.08999 * 109.47482 * 35.00209 * 18 17 15 20 20 C 1.53001 * 109.47293 * 275.00162 * 18 17 15 21 21 O 1.42901 * 109.47285 * 295.00059 * 20 18 17 22 22 C 1.53002 * 109.47410 * 155.00214 * 18 17 15 23 23 H 1.08993 * 110.91373 * 182.13010 * 22 18 17 24 24 C 1.55450 * 110.92215 * 305.75493 * 22 18 17 25 25 C 1.54941 * 100.98829 * 152.22386 * 24 22 18 26 26 O 1.43645 * 105.13875 * 323.60481 * 25 24 22 27 27 C 1.43235 * 109.96875 * 24.42576 * 26 25 24 28 28 C 1.38868 * 119.86028 * 0.27423 * 13 12 11 29 29 C 1.38119 * 119.92327 * 359.47271 * 28 13 12 30 30 H 0.97004 * 120.00013 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47008 * 59.99774 * 9 7 2 32 32 H 1.09003 * 109.46681 * 300.00681 * 9 7 2 33 33 H 1.08001 * 119.96312 * 0.02783 * 11 10 9 34 34 H 1.07999 * 120.03568 * 179.97438 * 12 11 10 35 35 H 0.97002 * 120.00078 * 326.85211 * 14 13 12 36 36 H 0.97000 * 120.00432 * 0.02562 * 17 15 14 37 37 H 1.08998 * 109.46883 * 55.00163 * 20 18 17 38 38 H 1.09009 * 109.47208 * 174.99956 * 20 18 17 39 39 H 0.96696 * 114.00047 * 180.02562 * 21 20 18 40 40 H 1.09005 * 111.06051 * 34.30642 * 24 22 18 41 41 H 1.09004 * 111.18475 * 270.19316 * 24 22 18 42 42 H 1.09006 * 110.30833 * 204.68678 * 25 24 22 43 43 H 1.09003 * 110.31300 * 82.52637 * 25 24 22 44 44 H 1.09001 * 109.82869 * 117.80317 * 27 26 25 45 45 H 1.08995 * 109.83422 * 238.68242 * 27 26 25 46 46 H 1.07995 * 120.03863 * 179.69986 * 28 13 12 47 47 H 1.08000 * 119.95897 * 180.27508 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.6788 -4.1690 1.1977 12 6 3.5767 -5.2183 1.2011 13 6 4.0296 -5.7465 -0.0007 14 7 4.9390 -6.8102 -0.0008 15 6 4.8923 -7.7367 -0.9786 16 8 4.0015 -7.7035 -1.8054 17 7 5.8331 -8.6998 -1.0397 18 6 5.7826 -9.7066 -2.1028 19 1 5.4066 -9.2498 -3.0182 20 6 4.8524 -10.8462 -1.6822 21 8 5.4059 -11.5197 -0.5499 22 6 7.1878 -10.2596 -2.3487 23 1 7.1836 -10.9848 -3.1624 24 6 8.1940 -9.1104 -2.6375 25 6 9.5165 -9.7426 -2.1356 26 8 9.1485 -10.5160 -0.9824 27 6 7.7661 -10.8829 -1.0601 28 6 3.5822 -5.2136 -1.2025 29 6 2.6802 -4.1676 -1.1989 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8897 33 1 2.3265 -3.7575 2.1321 34 1 3.9269 -5.6272 2.1374 35 1 5.6029 -6.8808 0.7029 36 1 6.5436 -8.7265 -0.3799 37 1 3.8751 -10.4401 -1.4215 38 1 4.7449 -11.5507 -2.5071 39 1 4.8679 -12.2560 -0.2284 40 1 7.9434 -8.2172 -2.0650 41 1 8.2440 -8.8893 -3.7037 42 1 10.2267 -8.9637 -1.8579 43 1 9.9428 -10.3879 -2.9037 44 1 7.6733 -11.9681 -1.1005 45 1 7.2321 -10.4983 -0.1913 46 1 3.9362 -5.6190 -2.1388 47 1 2.3284 -3.7556 -2.1333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364166255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:50 Heat of formation + Delta-G solvation = -98.401886 kcal Electronic energy + Delta-G solvation = -28468.653619 eV Core-core repulsion = 24423.358770 eV Total energy + Delta-G solvation = -4045.294849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.94900 -39.81817 -38.35890 -37.35860 -35.24025 -34.73513 -33.07016 -32.24713 -30.58341 -30.25459 -29.82158 -28.25666 -26.48783 -23.94403 -23.25634 -22.49250 -22.34225 -21.50720 -20.27949 -20.13647 -18.85125 -17.72301 -17.48286 -16.83032 -16.40181 -16.26616 -15.66705 -15.30448 -15.10622 -14.90988 -14.76085 -14.33181 -14.19681 -14.12551 -13.71789 -13.55669 -13.28773 -12.97239 -12.77550 -12.70890 -12.55324 -12.00809 -11.81488 -11.41759 -11.37852 -11.26498 -11.22639 -11.20947 -10.82220 -10.59269 -10.47032 -10.35836 -10.17218 -9.88895 -9.80557 -9.45074 -9.32321 -9.21413 -8.40070 -8.24795 -7.31976 -6.01307 -4.05274 1.97633 2.10519 2.50389 3.14298 3.31862 3.37996 3.42070 3.48623 3.85735 3.95959 4.02831 4.19482 4.40993 4.53558 4.60569 4.75518 4.81937 4.86978 4.93555 4.99238 5.26295 5.28766 5.32589 5.40577 5.42228 5.47514 5.54024 5.60527 5.64746 5.81332 5.96903 6.06824 6.11939 6.23339 6.24918 6.57139 6.68093 6.69769 6.96804 7.06938 7.19629 7.20949 7.25007 7.54919 7.75827 7.86127 7.90636 7.94561 8.35403 8.48817 9.00141 9.58306 11.08217 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.002117 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.396501 B =13223.957486 C =13772.930849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.045 4.045 11 C -0.107 4.107 12 C -0.146 4.146 13 C 0.124 3.876 14 N -0.681 5.681 15 C 0.703 3.297 16 O -0.574 6.574 17 N -0.736 5.736 18 C 0.179 3.821 19 H 0.108 0.892 20 C 0.059 3.941 21 O -0.567 6.567 22 C -0.127 4.127 23 H 0.097 0.903 24 C -0.156 4.156 25 C 0.051 3.949 26 O -0.392 6.392 27 C 0.067 3.933 28 C -0.117 4.117 29 C -0.107 4.107 30 H 0.262 0.738 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.401 0.599 36 H 0.398 0.602 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.377 0.623 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.124 0.876 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.034 -24.981 -3.076 29.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.045 4.045 11 C -0.126 4.126 12 C -0.166 4.166 13 C 0.031 3.969 14 N -0.327 5.327 15 C 0.403 3.597 16 O -0.451 6.451 17 N -0.393 5.393 18 C 0.073 3.927 19 H 0.125 0.875 20 C -0.020 4.020 21 O -0.373 6.373 22 C -0.146 4.146 23 H 0.115 0.885 24 C -0.194 4.194 25 C -0.025 4.025 26 O -0.312 6.312 27 C -0.009 4.009 28 C -0.137 4.137 29 C -0.126 4.126 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.140 0.860 34 H 0.131 0.869 35 H 0.236 0.764 36 H 0.234 0.766 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.225 0.775 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.142 0.858 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.696 -24.477 -3.783 29.322 hybrid contribution 0.449 0.485 0.486 0.820 sum 16.145 -23.992 -3.297 29.106 Atomic orbital electron populations 1.69962 1.06021 1.26757 1.50626 1.25018 0.94881 0.99234 0.95281 0.86544 0.79819 0.83225 0.78155 1.20620 1.21201 1.19829 1.21071 0.93041 0.89895 1.50791 0.92475 1.18344 0.92585 0.89595 0.98365 1.20689 0.96593 0.95379 0.91864 1.20860 0.97373 0.95822 0.98529 1.20708 1.00455 0.99990 0.95471 1.17281 0.95356 0.89896 0.94372 1.42479 1.36288 1.25435 1.28534 1.15921 0.82310 0.79163 0.82258 1.90956 1.36178 1.76166 1.41752 1.45166 1.30549 1.30234 1.33330 1.20743 0.94039 0.86814 0.91127 0.87462 1.22679 0.96890 0.93845 0.88566 1.86513 1.51550 1.50527 1.48732 1.23023 0.94169 0.97888 0.99513 0.88454 1.23399 0.94391 0.98640 1.02930 1.23345 0.96641 0.94277 0.88281 1.88427 1.26867 1.72778 1.43092 1.23210 0.80586 0.99882 0.97236 1.20989 0.99523 0.96467 0.96727 1.20985 0.97444 0.95683 0.98481 0.92879 0.95326 0.95350 0.86047 0.86894 0.76445 0.76637 0.92349 0.92665 0.77543 0.89812 0.89665 0.89781 0.92305 0.90997 0.89806 0.85823 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.51 -14.35 9.09 -34.44 -0.31 -14.66 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.05 1.25 5.10 -29.03 -0.15 1.10 16 10 C -0.04 -0.99 5.07 -104.60 -0.53 -1.52 16 11 C -0.11 -2.09 9.69 -39.62 -0.38 -2.47 16 12 C -0.15 -2.41 9.96 -39.39 -0.39 -2.81 16 13 C 0.12 2.06 6.28 -83.69 -0.53 1.53 16 14 N -0.68 -8.69 5.35 -14.22 -0.08 -8.76 16 15 C 0.70 9.20 8.27 -86.92 -0.72 8.48 16 16 O -0.57 -9.71 13.70 5.29 0.07 -9.63 16 17 N -0.74 -6.68 3.83 -58.68 -0.22 -6.90 16 18 C 0.18 1.41 2.36 -67.93 -0.16 1.25 16 19 H 0.11 0.97 7.58 -51.93 -0.39 0.58 16 20 C 0.06 0.42 6.85 37.16 0.25 0.67 16 21 O -0.57 -3.48 9.81 -35.23 -0.35 -3.83 16 22 C -0.13 -0.81 2.93 -88.59 -0.26 -1.07 16 23 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 24 C -0.16 -1.00 6.52 -24.41 -0.16 -1.16 16 25 C 0.05 0.35 7.78 38.18 0.30 0.65 16 26 O -0.39 -3.66 11.36 -35.23 -0.40 -4.06 16 27 C 0.07 0.51 5.34 37.88 0.20 0.71 16 28 C -0.12 -2.18 8.65 -39.39 -0.34 -2.52 16 29 C -0.11 -2.21 9.69 -39.61 -0.38 -2.60 16 30 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 31 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 32 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.40 3.77 8.83 -40.82 -0.36 3.41 16 36 H 0.40 3.05 6.82 -40.82 -0.28 2.77 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 39 H 0.38 1.04 9.12 45.56 0.42 1.46 16 40 H 0.08 0.61 6.99 -51.93 -0.36 0.25 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.54 7.75 -51.93 -0.40 0.14 16 45 H 0.08 0.69 5.16 -51.93 -0.27 0.42 16 46 H 0.12 2.29 6.42 -52.49 -0.34 1.95 16 47 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -34.09 381.13 -9.35 -43.44 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.17 Total: 6.14 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -3.66 Total: -12.89 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.44 Total: -41.52 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.67 Total: -17.52 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.09 -9.35 -43.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364166255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.966 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds