Wall clock time and date at job start Tue Mar 31 2020 23:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99729 * 2 1 4 4 H 1.48498 * 109.47282 * 270.00166 * 3 2 1 5 5 H 1.48501 * 109.47122 * 30.00272 * 3 2 1 6 6 H 1.48502 * 109.46711 * 149.99968 * 3 2 1 7 7 C 1.37868 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47482 * 180.02562 * 9 7 2 11 11 C 1.38274 * 119.93502 * 89.99647 * 10 9 7 12 12 C 1.38110 * 120.07442 * 180.02562 * 11 10 9 13 13 C 1.38869 * 119.92875 * 0.02562 * 12 11 10 14 14 N 1.39945 * 120.07138 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99752 * 146.84258 * 14 13 12 16 16 O 1.21583 * 120.00141 * 354.69312 * 15 14 13 17 17 N 1.34777 * 119.99411 * 174.68748 * 15 14 13 18 18 C 1.46498 * 119.99657 * 180.02562 * 17 15 14 19 19 H 1.08999 * 109.47482 * 35.00209 * 18 17 15 20 20 C 1.53001 * 109.47293 * 275.00162 * 18 17 15 21 21 O 1.42901 * 109.47285 * 295.00059 * 20 18 17 22 22 C 1.53002 * 109.47410 * 155.00214 * 18 17 15 23 23 H 1.08993 * 110.91373 * 182.13010 * 22 18 17 24 24 C 1.55450 * 110.92215 * 305.75493 * 22 18 17 25 25 C 1.54941 * 100.98829 * 152.22386 * 24 22 18 26 26 O 1.43645 * 105.13875 * 323.60481 * 25 24 22 27 27 C 1.43235 * 109.96875 * 24.42576 * 26 25 24 28 28 C 1.38868 * 119.86028 * 0.27423 * 13 12 11 29 29 C 1.38119 * 119.92327 * 359.47271 * 28 13 12 30 30 H 0.97004 * 120.00013 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47008 * 59.99774 * 9 7 2 32 32 H 1.09003 * 109.46681 * 300.00681 * 9 7 2 33 33 H 1.08001 * 119.96312 * 0.02783 * 11 10 9 34 34 H 1.07999 * 120.03568 * 179.97438 * 12 11 10 35 35 H 0.97002 * 120.00078 * 326.85211 * 14 13 12 36 36 H 0.97000 * 120.00432 * 0.02562 * 17 15 14 37 37 H 1.08998 * 109.46883 * 55.00163 * 20 18 17 38 38 H 1.09009 * 109.47208 * 174.99956 * 20 18 17 39 39 H 0.96696 * 114.00047 * 180.02562 * 21 20 18 40 40 H 1.09005 * 111.06051 * 34.30642 * 24 22 18 41 41 H 1.09004 * 111.18475 * 270.19316 * 24 22 18 42 42 H 1.09006 * 110.30833 * 204.68678 * 25 24 22 43 43 H 1.09003 * 110.31300 * 82.52637 * 25 24 22 44 44 H 1.09001 * 109.82869 * 117.80317 * 27 26 25 45 45 H 1.08995 * 109.83422 * 238.68242 * 27 26 25 46 46 H 1.07995 * 120.03863 * 179.69986 * 28 13 12 47 47 H 1.08000 * 119.95897 * 180.27508 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.6788 -4.1690 1.1977 12 6 3.5767 -5.2183 1.2011 13 6 4.0296 -5.7465 -0.0007 14 7 4.9390 -6.8102 -0.0008 15 6 4.8923 -7.7367 -0.9786 16 8 4.0015 -7.7035 -1.8054 17 7 5.8331 -8.6998 -1.0397 18 6 5.7826 -9.7066 -2.1028 19 1 5.4066 -9.2498 -3.0182 20 6 4.8524 -10.8462 -1.6822 21 8 5.4059 -11.5197 -0.5499 22 6 7.1878 -10.2596 -2.3487 23 1 7.1836 -10.9848 -3.1624 24 6 8.1940 -9.1104 -2.6375 25 6 9.5165 -9.7426 -2.1356 26 8 9.1485 -10.5160 -0.9824 27 6 7.7661 -10.8829 -1.0601 28 6 3.5822 -5.2136 -1.2025 29 6 2.6802 -4.1676 -1.1989 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8897 33 1 2.3265 -3.7575 2.1321 34 1 3.9269 -5.6272 2.1374 35 1 5.6029 -6.8808 0.7029 36 1 6.5436 -8.7265 -0.3799 37 1 3.8751 -10.4401 -1.4215 38 1 4.7449 -11.5507 -2.5071 39 1 4.8679 -12.2560 -0.2284 40 1 7.9434 -8.2172 -2.0650 41 1 8.2440 -8.8893 -3.7037 42 1 10.2267 -8.9637 -1.8579 43 1 9.9428 -10.3879 -2.9037 44 1 7.6733 -11.9681 -1.1005 45 1 7.2321 -10.4983 -0.1913 46 1 3.9362 -5.6190 -2.1388 47 1 2.3284 -3.7556 -2.1333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364166255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:20 Heat of formation + Delta-G solvation = -122.984048 kcal Electronic energy + Delta-G solvation = -28469.719582 eV Core-core repulsion = 24423.358770 eV Total energy + Delta-G solvation = -4046.360812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 32.18 seconds Orbital eigenvalues (eV) -41.88886 -40.69328 -39.61290 -38.02180 -36.30818 -35.78743 -34.97067 -33.15679 -31.97944 -31.74149 -30.66142 -28.93063 -28.18684 -25.30424 -24.31864 -23.82413 -23.10761 -22.62324 -21.62654 -20.93903 -19.82631 -18.60866 -18.46714 -18.30204 -17.49501 -17.14018 -16.80129 -16.64481 -16.10215 -15.92112 -15.81195 -15.54224 -15.29153 -15.06025 -14.68362 -14.51026 -14.41864 -14.21726 -14.13949 -13.85922 -13.64835 -13.27316 -13.23326 -13.11799 -12.61342 -12.44188 -12.35180 -12.04603 -11.94895 -11.85246 -11.72927 -11.66139 -11.54883 -11.28510 -10.98560 -10.85059 -10.59173 -10.41965 -10.11784 -9.74269 -8.81145 -8.16714 -6.31638 0.50711 0.59644 1.40573 1.41836 1.53097 1.53612 2.05107 2.41289 2.95729 3.03986 3.12076 3.12265 3.35437 3.43992 3.62025 3.99489 4.06636 4.17267 4.25233 4.27995 4.34812 4.40149 4.40647 4.48225 4.60079 4.66476 4.67930 4.72537 4.77274 4.89307 4.91736 5.00525 5.10150 5.14139 5.26013 5.31335 5.34818 5.43336 5.45521 5.51637 5.64382 5.77461 5.92919 6.10840 6.13389 6.14719 6.28067 6.81155 6.88046 6.93540 7.36708 7.46441 8.90997 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.002117 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.396501 B =13223.957486 C =13772.930849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.057 3.943 10 C -0.077 4.077 11 C -0.112 4.112 12 C -0.131 4.131 13 C 0.141 3.859 14 N -0.670 5.670 15 C 0.702 3.298 16 O -0.613 6.613 17 N -0.716 5.716 18 C 0.174 3.826 19 H 0.096 0.904 20 C 0.066 3.934 21 O -0.573 6.573 22 C -0.116 4.116 23 H 0.115 0.885 24 C -0.154 4.154 25 C 0.048 3.952 26 O -0.415 6.415 27 C 0.070 3.930 28 C -0.122 4.122 29 C -0.118 4.118 30 H 0.265 0.735 31 H -0.001 1.001 32 H 0.006 0.994 33 H 0.126 0.874 34 H 0.156 0.844 35 H 0.421 0.579 36 H 0.408 0.592 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.393 0.607 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.124 0.876 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.737 -26.456 -2.535 32.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.021 3.979 10 C -0.078 4.078 11 C -0.131 4.131 12 C -0.152 4.152 13 C 0.046 3.954 14 N -0.318 5.318 15 C 0.402 3.598 16 O -0.492 6.492 17 N -0.373 5.373 18 C 0.069 3.931 19 H 0.114 0.886 20 C -0.013 4.013 21 O -0.381 6.381 22 C -0.135 4.135 23 H 0.133 0.867 24 C -0.192 4.192 25 C -0.028 4.028 26 O -0.335 6.335 27 C -0.006 4.006 28 C -0.142 4.142 29 C -0.137 4.137 30 H 0.074 0.926 31 H 0.017 0.983 32 H 0.024 0.976 33 H 0.143 0.857 34 H 0.174 0.826 35 H 0.259 0.741 36 H 0.246 0.754 37 H 0.051 0.949 38 H 0.095 0.905 39 H 0.243 0.757 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.142 0.858 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 18.455 -26.009 -3.215 32.053 hybrid contribution -0.335 0.767 0.313 0.893 sum 18.120 -25.243 -2.903 31.208 Atomic orbital electron populations 1.70091 1.07704 1.27903 1.51458 1.25954 0.95784 1.03173 0.94677 0.85427 0.78668 0.78364 0.78482 1.19891 1.20463 1.18796 1.21388 0.93117 0.91159 1.50699 0.92617 1.18083 0.92883 0.91216 0.95768 1.20379 0.97866 0.95779 0.93751 1.20949 0.97967 0.96618 0.97528 1.20982 0.98684 0.98343 0.97143 1.17328 0.94599 0.89818 0.93636 1.42303 1.35985 1.24296 1.29251 1.16054 0.82443 0.79610 0.81666 1.90944 1.37942 1.77168 1.43168 1.45047 1.29447 1.29225 1.33542 1.20882 0.95299 0.86665 0.90254 0.88564 1.22519 0.95171 0.94015 0.89593 1.86471 1.51951 1.51236 1.48457 1.22967 0.92831 0.98083 0.99596 0.86680 1.23383 0.94160 0.98131 1.03489 1.23471 0.96913 0.94485 0.87961 1.88406 1.27651 1.73215 1.44253 1.23182 0.80024 0.99994 0.97412 1.20989 0.99374 0.96002 0.97867 1.20905 0.98454 0.96708 0.97651 0.92611 0.98287 0.97566 0.85652 0.82606 0.74058 0.75443 0.94928 0.90519 0.75697 0.90785 0.88539 0.89301 0.91213 0.90811 0.90450 0.85768 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.44 0.28 -56.71 16 2 C 0.00 0.11 5.46 84.65 0.46 0.58 16 3 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.53 -30.52 9.09 25.60 0.23 -30.29 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.06 3.17 5.10 29.10 0.15 3.31 16 10 C -0.08 -3.53 5.07 -19.85 -0.10 -3.63 16 11 C -0.11 -4.33 9.69 22.25 0.22 -4.11 16 12 C -0.13 -4.02 9.96 22.39 0.22 -3.80 16 13 C 0.14 4.42 6.28 38.15 0.24 4.66 16 14 N -0.67 -15.36 5.35 -317.17 -1.70 -17.06 16 15 C 0.70 17.17 8.27 179.05 1.48 18.65 16 16 O -0.61 -20.31 13.70 -3.98 -0.05 -20.36 16 17 N -0.72 -11.57 3.83 -457.81 -1.75 -13.32 16 18 C 0.17 2.42 2.36 44.99 0.11 2.53 16 19 H 0.10 1.62 7.58 -2.39 -0.02 1.60 16 20 C 0.07 0.81 6.85 71.98 0.49 1.31 16 21 O -0.57 -5.70 9.81 -148.98 -1.46 -7.16 16 22 C -0.12 -1.19 2.93 -9.48 -0.03 -1.22 16 23 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 24 C -0.15 -1.62 6.52 32.10 0.21 -1.41 16 25 C 0.05 0.55 7.78 72.65 0.57 1.11 16 26 O -0.41 -6.90 11.36 -148.98 -1.69 -8.59 16 27 C 0.07 0.90 5.34 72.45 0.39 1.29 16 28 C -0.12 -4.54 8.65 22.39 0.19 -4.35 16 29 C -0.12 -5.07 9.69 22.25 0.22 -4.85 16 30 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.00 -0.07 8.09 -2.39 -0.02 -0.09 16 32 H 0.01 0.35 8.08 -2.39 -0.02 0.33 16 33 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.42 6.38 8.83 -92.71 -0.82 5.56 16 36 H 0.41 5.21 6.82 -92.71 -0.63 4.58 16 37 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.39 1.24 9.12 -74.06 -0.68 0.57 16 40 H 0.07 0.93 6.99 -2.38 -0.02 0.91 16 41 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 0.93 7.75 -2.39 -0.02 0.91 16 45 H 0.08 1.09 5.16 -2.39 -0.01 1.07 16 46 H 0.12 4.61 6.42 -2.91 -0.02 4.59 16 47 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -75.96 381.13 -0.41 -76.37 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -1.11 Total: 20.28 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 5.04 Total: -20.23 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -3.16 Total: -87.09 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -3.21 Total: -36.11 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -75.96 -0.41 -76.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364166255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.615 kcal (2) G-P(sol) polarization free energy of solvation -75.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 32.18 seconds