Wall clock time and date at job start Tue Mar 31 2020 23:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48500 * 109.47020 * 270.00649 * 3 2 1 5 5 H 1.48499 * 109.47030 * 30.00182 * 3 2 1 6 6 H 1.48500 * 109.47369 * 150.00152 * 3 2 1 7 7 C 1.37878 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99713 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00206 * 179.97438 * 7 2 1 10 10 C 1.50702 * 109.47012 * 179.97438 * 9 7 2 11 11 C 1.38284 * 119.92716 * 90.00080 * 10 9 7 12 12 C 1.38112 * 120.06722 * 179.97438 * 11 10 9 13 13 C 1.38864 * 119.93272 * 0.02562 * 12 11 10 14 14 N 1.39947 * 120.07315 * 180.02562 * 13 12 11 15 15 C 1.34770 * 120.00378 * 146.84566 * 14 13 12 16 16 O 1.21589 * 120.00079 * 354.68151 * 15 14 13 17 17 N 1.34778 * 120.00117 * 174.68827 * 15 14 13 18 18 C 1.46504 * 119.99830 * 179.97438 * 17 15 14 19 19 H 1.08998 * 109.47275 * 324.99949 * 18 17 15 20 20 C 1.52999 * 109.46850 * 85.00291 * 18 17 15 21 21 O 1.42897 * 109.47595 * 64.99746 * 20 18 17 22 22 C 1.53001 * 109.46698 * 204.99592 * 18 17 15 23 23 H 1.09003 * 110.80388 * 182.82469 * 22 18 17 24 24 C 1.54814 * 110.93789 * 59.18028 * 22 18 17 25 25 C 1.54091 * 104.18813 * 220.90263 * 24 22 18 26 26 O 1.43888 * 107.37867 * 358.10357 * 25 24 22 27 27 C 1.44376 * 106.89522 * 26.27251 * 26 25 24 28 28 C 1.38862 * 119.85924 * 0.27178 * 13 12 11 29 29 C 1.38113 * 119.93047 * 359.43060 * 28 13 12 30 30 H 0.96991 * 119.99819 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.46819 * 60.00059 * 9 7 2 32 32 H 1.08996 * 109.46958 * 299.99373 * 9 7 2 33 33 H 1.08000 * 119.96685 * 0.02562 * 11 10 9 34 34 H 1.08004 * 120.03610 * 180.02562 * 12 11 10 35 35 H 0.96998 * 119.99652 * 326.84245 * 14 13 12 36 36 H 0.97000 * 119.99691 * 359.97438 * 17 15 14 37 37 H 1.08998 * 109.46970 * 185.00077 * 20 18 17 38 38 H 1.09001 * 109.47049 * 304.99554 * 20 18 17 39 39 H 0.96698 * 114.00550 * 180.02562 * 21 20 18 40 40 H 1.09004 * 110.48806 * 339.58259 * 24 22 18 41 41 H 1.08999 * 110.48514 * 102.22381 * 24 22 18 42 42 H 1.09003 * 109.87741 * 117.39690 * 25 24 22 43 43 H 1.09002 * 109.88181 * 238.39421 * 25 24 22 44 44 H 1.09006 * 110.61704 * 201.58152 * 27 26 25 45 45 H 1.08995 * 110.62235 * 78.74421 * 27 26 25 46 46 H 1.08001 * 120.03830 * 179.69975 * 28 13 12 47 47 H 1.07997 * 119.96981 * 180.31695 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0139 -2.6149 -0.0010 11 6 4.2434 -3.2656 -1.1994 12 6 4.7043 -4.5675 -1.2027 13 6 4.9366 -5.2233 -0.0009 14 7 5.4041 -6.5424 -0.0008 15 6 6.2308 -6.9643 0.9764 16 8 6.6477 -6.1758 1.8027 17 7 6.5956 -8.2604 1.0377 18 6 7.4947 -8.7189 2.0996 19 1 8.2176 -7.9354 2.3271 20 6 6.6799 -9.0409 3.3539 21 8 5.8137 -10.1459 3.0887 22 6 8.2336 -9.9755 1.6350 23 1 8.8725 -10.3644 2.4279 24 6 9.0542 -9.6925 0.3531 25 6 8.8389 -10.9456 -0.5175 26 8 8.0163 -11.8554 0.2348 27 6 7.2349 -11.0566 1.1490 28 6 4.6993 -4.5692 1.2008 29 6 4.2443 -3.2652 1.1974 30 1 -0.4849 0.8400 0.0004 31 1 3.8752 -0.6804 0.8889 32 1 3.8745 -0.6801 -0.8912 33 1 4.0629 -2.7549 -2.1337 34 1 4.8837 -5.0751 -2.1389 35 1 5.1331 -7.1530 -0.7040 36 1 6.2628 -8.8895 0.3786 37 1 7.3555 -9.2965 4.1703 38 1 6.0847 -8.1716 3.6336 39 1 5.2653 -10.4055 3.8417 40 1 8.6752 -8.8055 -0.1545 41 1 10.1103 -9.5728 0.5949 42 1 8.3326 -10.6713 -1.4430 43 1 9.7991 -11.4092 -0.7438 44 1 6.8868 -11.6616 1.9863 45 1 6.3922 -10.5965 0.6330 46 1 4.8744 -5.0781 2.1372 47 1 4.0644 -2.7541 2.1317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364166261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:12 Heat of formation + Delta-G solvation = -94.166682 kcal Electronic energy + Delta-G solvation = -28495.063517 eV Core-core repulsion = 24449.952321 eV Total energy + Delta-G solvation = -4045.111197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.97755 -39.84160 -38.42854 -37.36237 -35.28543 -34.79539 -33.03533 -32.25827 -30.79863 -30.33529 -29.94836 -28.29205 -26.87752 -23.97165 -23.30111 -22.41121 -22.37171 -21.34715 -20.32749 -20.10007 -18.80319 -17.76080 -17.52922 -16.89567 -16.74969 -16.30292 -15.64264 -15.48530 -15.16703 -14.89626 -14.71353 -14.60895 -14.07616 -14.05751 -13.83957 -13.69241 -13.24847 -13.03790 -12.85120 -12.68992 -12.43291 -12.36731 -11.85814 -11.63233 -11.54571 -11.41174 -11.26741 -11.11533 -10.85348 -10.53073 -10.42024 -10.29458 -10.15109 -10.01011 -9.92282 -9.56869 -9.38743 -9.27269 -8.56839 -8.32048 -7.37426 -6.05968 -4.04718 1.89508 2.03099 2.46437 3.09719 3.29911 3.37796 3.41387 3.50333 3.86882 3.98660 4.03745 4.26851 4.43092 4.43661 4.46737 4.65266 4.81506 4.85190 4.91920 4.99754 5.25586 5.27892 5.29915 5.36264 5.40456 5.41586 5.50910 5.54047 5.65903 5.68610 5.87377 5.98324 6.00670 6.14010 6.20227 6.48151 6.52985 6.59296 6.84895 6.97708 7.00008 7.06950 7.10584 7.20405 7.61244 7.63315 7.73797 7.81471 8.44034 8.51632 8.99637 9.54594 11.06983 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026761 B = 0.002090 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.058196 B =13393.695847 C =13723.355975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.041 4.041 11 C -0.104 4.104 12 C -0.145 4.145 13 C 0.128 3.872 14 N -0.681 5.681 15 C 0.703 3.297 16 O -0.574 6.574 17 N -0.736 5.736 18 C 0.178 3.822 19 H 0.107 0.893 20 C 0.061 3.939 21 O -0.569 6.569 22 C -0.124 4.124 23 H 0.099 0.901 24 C -0.156 4.156 25 C 0.046 3.954 26 O -0.384 6.384 27 C 0.065 3.935 28 C -0.116 4.116 29 C -0.104 4.104 30 H 0.264 0.736 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.401 0.599 36 H 0.397 0.603 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.379 0.621 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.108 0.892 45 H 0.059 0.941 46 H 0.125 0.875 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.863 -23.797 2.566 29.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.041 4.041 11 C -0.123 4.123 12 C -0.166 4.166 13 C 0.035 3.965 14 N -0.328 5.328 15 C 0.403 3.597 16 O -0.450 6.450 17 N -0.393 5.393 18 C 0.072 3.928 19 H 0.125 0.875 20 C -0.019 4.019 21 O -0.375 6.375 22 C -0.144 4.144 23 H 0.117 0.883 24 C -0.194 4.194 25 C -0.031 4.031 26 O -0.303 6.303 27 C -0.011 4.011 28 C -0.136 4.136 29 C -0.123 4.123 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.236 0.764 36 H 0.233 0.767 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.227 0.773 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.126 0.874 45 H 0.077 0.923 46 H 0.143 0.857 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 18.388 -23.185 2.740 29.719 hybrid contribution -0.266 0.557 -0.120 0.629 sum 18.123 -22.628 2.620 29.109 Atomic orbital electron populations 1.69900 1.06249 1.26932 1.50849 1.25008 0.94746 0.99034 0.94559 0.86804 0.80440 0.83661 0.78611 1.20193 1.21299 1.18891 1.20946 0.88303 0.94621 1.51045 0.90819 1.18801 0.97385 0.88737 0.97342 1.20281 0.93604 0.98099 0.92142 1.20833 0.99486 0.93594 0.98389 1.20696 1.04898 0.95435 0.95542 1.17291 1.01420 0.83417 0.94356 1.42478 1.49558 1.12023 1.28701 1.15931 0.79207 0.82359 0.82172 1.90956 1.58727 1.53483 1.41855 1.45211 1.52796 1.07939 1.33379 1.20778 0.90628 0.95623 0.85795 0.87516 1.22667 0.93096 0.89464 0.96625 1.86460 1.57541 1.51027 1.42443 1.22981 0.97354 0.95396 0.98639 0.88297 1.23047 1.01436 0.99098 0.95846 1.23159 0.95556 0.89813 0.94599 1.88931 1.56516 1.31190 1.53645 1.23593 0.92580 0.92275 0.92691 1.20974 1.00238 0.95566 0.96821 1.20953 0.99056 0.93920 0.98351 0.92645 0.95414 0.95864 0.85945 0.86744 0.76420 0.76724 0.92635 0.92355 0.77330 0.90118 0.90228 0.92476 0.89965 0.87405 0.92323 0.85717 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.51 -14.52 9.65 -34.44 -0.33 -14.85 16 8 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 9 C 0.01 0.35 4.17 -29.04 -0.12 0.23 16 10 C -0.04 -0.87 5.07 -104.59 -0.53 -1.40 16 11 C -0.10 -1.96 9.69 -39.61 -0.38 -2.35 16 12 C -0.15 -2.32 9.96 -39.40 -0.39 -2.71 16 13 C 0.13 2.07 6.28 -83.69 -0.53 1.55 16 14 N -0.68 -8.39 5.35 -14.23 -0.08 -8.47 16 15 C 0.70 8.90 8.27 -86.92 -0.72 8.19 16 16 O -0.57 -9.44 13.70 5.29 0.07 -9.37 16 17 N -0.74 -6.40 4.06 -58.67 -0.24 -6.63 16 18 C 0.18 1.36 2.27 -67.93 -0.15 1.21 16 19 H 0.11 0.95 7.58 -51.93 -0.39 0.55 16 20 C 0.06 0.42 6.85 37.16 0.25 0.68 16 21 O -0.57 -3.48 10.27 -35.23 -0.36 -3.84 16 22 C -0.12 -0.79 2.99 -88.61 -0.26 -1.05 16 23 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 24 C -0.16 -0.96 6.48 -25.21 -0.16 -1.12 16 25 C 0.05 0.31 7.70 37.73 0.29 0.60 16 26 O -0.38 -3.49 11.53 -35.23 -0.41 -3.90 16 27 C 0.06 0.48 5.39 38.21 0.21 0.68 16 28 C -0.12 -2.11 8.65 -39.40 -0.34 -2.45 16 29 C -0.10 -2.08 9.69 -39.61 -0.38 -2.47 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.03 0.67 7.14 -51.93 -0.37 0.29 16 32 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 33 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.40 3.58 8.83 -40.82 -0.36 3.22 16 36 H 0.40 2.81 6.51 -40.82 -0.27 2.54 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.38 1.07 9.12 45.56 0.42 1.49 16 40 H 0.08 0.55 7.23 -51.93 -0.38 0.17 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.11 0.79 6.83 -51.93 -0.35 0.44 16 45 H 0.06 0.43 5.92 -51.93 -0.31 0.12 16 46 H 0.12 2.26 6.42 -52.49 -0.34 1.93 16 47 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -34.79 378.09 -9.00 -43.78 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.13 Total: 6.19 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -3.66 Total: -13.41 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.46 Total: -41.95 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.70 Total: -17.11 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.79 -9.00 -43.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364166261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.384 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds