Wall clock time and date at job start Tue Mar 31 2020 23:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48500 * 109.47020 * 270.00649 * 3 2 1 5 5 H 1.48499 * 109.47030 * 30.00182 * 3 2 1 6 6 H 1.48500 * 109.47369 * 150.00152 * 3 2 1 7 7 C 1.37878 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99713 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00206 * 179.97438 * 7 2 1 10 10 C 1.50702 * 109.47012 * 179.97438 * 9 7 2 11 11 C 1.38284 * 119.92716 * 90.00080 * 10 9 7 12 12 C 1.38112 * 120.06722 * 179.97438 * 11 10 9 13 13 C 1.38864 * 119.93272 * 0.02562 * 12 11 10 14 14 N 1.39947 * 120.07315 * 180.02562 * 13 12 11 15 15 C 1.34770 * 120.00378 * 146.84566 * 14 13 12 16 16 O 1.21589 * 120.00079 * 354.68151 * 15 14 13 17 17 N 1.34778 * 120.00117 * 174.68827 * 15 14 13 18 18 C 1.46504 * 119.99830 * 179.97438 * 17 15 14 19 19 H 1.08998 * 109.47275 * 324.99949 * 18 17 15 20 20 C 1.52999 * 109.46850 * 85.00291 * 18 17 15 21 21 O 1.42897 * 109.47595 * 64.99746 * 20 18 17 22 22 C 1.53001 * 109.46698 * 204.99592 * 18 17 15 23 23 H 1.09003 * 110.80388 * 182.82469 * 22 18 17 24 24 C 1.54814 * 110.93789 * 59.18028 * 22 18 17 25 25 C 1.54091 * 104.18813 * 220.90263 * 24 22 18 26 26 O 1.43888 * 107.37867 * 358.10357 * 25 24 22 27 27 C 1.44376 * 106.89522 * 26.27251 * 26 25 24 28 28 C 1.38862 * 119.85924 * 0.27178 * 13 12 11 29 29 C 1.38113 * 119.93047 * 359.43060 * 28 13 12 30 30 H 0.96991 * 119.99819 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.46819 * 60.00059 * 9 7 2 32 32 H 1.08996 * 109.46958 * 299.99373 * 9 7 2 33 33 H 1.08000 * 119.96685 * 0.02562 * 11 10 9 34 34 H 1.08004 * 120.03610 * 180.02562 * 12 11 10 35 35 H 0.96998 * 119.99652 * 326.84245 * 14 13 12 36 36 H 0.97000 * 119.99691 * 359.97438 * 17 15 14 37 37 H 1.08998 * 109.46970 * 185.00077 * 20 18 17 38 38 H 1.09001 * 109.47049 * 304.99554 * 20 18 17 39 39 H 0.96698 * 114.00550 * 180.02562 * 21 20 18 40 40 H 1.09004 * 110.48806 * 339.58259 * 24 22 18 41 41 H 1.08999 * 110.48514 * 102.22381 * 24 22 18 42 42 H 1.09003 * 109.87741 * 117.39690 * 25 24 22 43 43 H 1.09002 * 109.88181 * 238.39421 * 25 24 22 44 44 H 1.09006 * 110.61704 * 201.58152 * 27 26 25 45 45 H 1.08995 * 110.62235 * 78.74421 * 27 26 25 46 46 H 1.08001 * 120.03830 * 179.69975 * 28 13 12 47 47 H 1.07997 * 119.96981 * 180.31695 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0139 -2.6149 -0.0010 11 6 4.2434 -3.2656 -1.1994 12 6 4.7043 -4.5675 -1.2027 13 6 4.9366 -5.2233 -0.0009 14 7 5.4041 -6.5424 -0.0008 15 6 6.2308 -6.9643 0.9764 16 8 6.6477 -6.1758 1.8027 17 7 6.5956 -8.2604 1.0377 18 6 7.4947 -8.7189 2.0996 19 1 8.2176 -7.9354 2.3271 20 6 6.6799 -9.0409 3.3539 21 8 5.8137 -10.1459 3.0887 22 6 8.2336 -9.9755 1.6350 23 1 8.8725 -10.3644 2.4279 24 6 9.0542 -9.6925 0.3531 25 6 8.8389 -10.9456 -0.5175 26 8 8.0163 -11.8554 0.2348 27 6 7.2349 -11.0566 1.1490 28 6 4.6993 -4.5692 1.2008 29 6 4.2443 -3.2652 1.1974 30 1 -0.4849 0.8400 0.0004 31 1 3.8752 -0.6804 0.8889 32 1 3.8745 -0.6801 -0.8912 33 1 4.0629 -2.7549 -2.1337 34 1 4.8837 -5.0751 -2.1389 35 1 5.1331 -7.1530 -0.7040 36 1 6.2628 -8.8895 0.3786 37 1 7.3555 -9.2965 4.1703 38 1 6.0847 -8.1716 3.6336 39 1 5.2653 -10.4055 3.8417 40 1 8.6752 -8.8055 -0.1545 41 1 10.1103 -9.5728 0.5949 42 1 8.3326 -10.6713 -1.4430 43 1 9.7991 -11.4092 -0.7438 44 1 6.8868 -11.6616 1.9863 45 1 6.3922 -10.5965 0.6330 46 1 4.8744 -5.0781 2.1372 47 1 4.0644 -2.7541 2.1317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364166261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:11 Heat of formation + Delta-G solvation = -120.224436 kcal Electronic energy + Delta-G solvation = -28496.193466 eV Core-core repulsion = 24449.952321 eV Total energy + Delta-G solvation = -4046.241146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 7.82 seconds Orbital eigenvalues (eV) -41.89752 -40.68858 -39.62668 -38.01505 -36.32367 -35.80272 -34.92201 -33.22643 -32.24422 -31.76080 -30.68416 -29.00353 -28.41069 -25.04579 -24.36875 -23.83540 -23.22268 -22.37513 -21.56440 -20.98247 -19.76743 -18.94873 -18.62535 -18.27212 -17.54312 -17.07398 -16.78616 -16.49006 -16.19969 -15.91790 -15.82632 -15.72591 -15.37343 -14.96797 -14.85851 -14.53958 -14.42781 -14.29077 -14.18222 -13.92676 -13.64608 -13.45666 -13.24384 -13.19418 -12.52957 -12.37608 -12.17170 -12.00340 -11.94397 -11.82399 -11.74293 -11.64547 -11.61217 -11.31449 -10.95634 -10.89249 -10.77015 -10.59173 -10.16547 -9.75143 -8.77818 -8.28230 -6.32838 0.48747 0.58749 1.37319 1.39511 1.51556 1.52254 2.04371 2.36749 2.97158 3.00364 3.05911 3.11397 3.37093 3.51264 3.71941 3.91892 4.04822 4.15412 4.15749 4.26824 4.31819 4.33041 4.38990 4.49028 4.57921 4.64744 4.67492 4.73286 4.75885 4.85731 4.89744 5.01572 5.06376 5.09417 5.12750 5.17123 5.26051 5.39070 5.44357 5.45509 5.57915 5.65991 5.90877 5.97625 6.02825 6.18478 6.31365 6.73266 6.87150 6.92399 7.30360 7.45272 8.88121 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026761 B = 0.002090 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.058196 B =13393.695847 C =13723.355975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.517 4.517 8 H 0.029 0.971 9 C 0.021 3.979 10 C -0.076 4.076 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.142 3.858 14 N -0.670 5.670 15 C 0.701 3.299 16 O -0.612 6.612 17 N -0.716 5.716 18 C 0.175 3.825 19 H 0.096 0.904 20 C 0.066 3.934 21 O -0.574 6.574 22 C -0.114 4.114 23 H 0.111 0.889 24 C -0.153 4.153 25 C 0.042 3.958 26 O -0.406 6.406 27 C 0.066 3.934 28 C -0.125 4.125 29 C -0.118 4.118 30 H 0.267 0.733 31 H 0.026 0.974 32 H 0.033 0.967 33 H 0.131 0.869 34 H 0.157 0.843 35 H 0.421 0.579 36 H 0.407 0.593 37 H 0.076 0.924 38 H 0.032 0.968 39 H 0.394 0.606 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.058 0.942 46 H 0.122 0.878 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.094 -25.085 1.691 32.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.555 4.555 8 H 0.047 0.953 9 C -0.016 4.016 10 C -0.077 4.077 11 C -0.129 4.129 12 C -0.154 4.154 13 C 0.047 3.953 14 N -0.319 5.319 15 C 0.402 3.598 16 O -0.491 6.491 17 N -0.374 5.374 18 C 0.070 3.930 19 H 0.114 0.886 20 C -0.013 4.013 21 O -0.383 6.383 22 C -0.133 4.133 23 H 0.129 0.871 24 C -0.191 4.191 25 C -0.035 4.035 26 O -0.326 6.326 27 C -0.010 4.010 28 C -0.146 4.146 29 C -0.137 4.137 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.149 0.851 34 H 0.174 0.826 35 H 0.259 0.741 36 H 0.246 0.754 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.244 0.756 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.126 0.874 45 H 0.076 0.924 46 H 0.140 0.860 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 20.630 -24.556 1.850 32.125 hybrid contribution -0.965 0.727 0.172 1.220 sum 19.665 -23.829 2.022 30.962 Atomic orbital electron populations 1.70056 1.08241 1.28200 1.52460 1.25983 0.95625 1.03356 0.94090 0.85656 0.79398 0.78186 0.79437 1.18717 1.20945 1.17230 1.21167 0.90785 0.92988 1.50528 0.95290 1.18641 0.94308 0.91169 0.97472 1.20157 0.96536 0.97293 0.93732 1.21011 0.99344 0.94864 0.97704 1.21002 1.02990 0.94289 0.97101 1.17362 0.99484 0.84722 0.93709 1.42310 1.49253 1.10943 1.29385 1.16066 0.79002 0.83143 0.81598 1.90942 1.60135 1.54826 1.43220 1.45088 1.52074 1.06576 1.33616 1.20884 0.90453 0.95882 0.85790 0.88574 1.22531 0.93137 0.88881 0.96763 1.86417 1.57785 1.50397 1.43659 1.22910 0.97086 0.94217 0.99117 0.87107 1.23025 1.02016 0.98570 0.95465 1.23285 0.95813 0.89761 0.94633 1.88913 1.57050 1.32398 1.54192 1.23593 0.92570 0.92326 0.92487 1.20986 1.00676 0.95057 0.97838 1.20949 0.99960 0.94893 0.97857 0.92406 0.95573 0.94870 0.85119 0.82551 0.74080 0.75439 0.90568 0.94942 0.75559 0.90631 0.89211 0.91970 0.89055 0.87450 0.92443 0.85983 0.86848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 2 C 0.01 0.37 5.47 84.65 0.46 0.83 16 3 Si 0.95 44.42 27.47 68.60 1.88 46.31 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 7 C -0.52 -30.33 9.65 25.60 0.25 -30.09 16 8 H 0.03 1.90 7.98 -2.91 -0.02 1.87 16 9 C 0.02 1.04 4.17 29.10 0.12 1.16 16 10 C -0.08 -3.30 5.07 -19.84 -0.10 -3.40 16 11 C -0.11 -4.05 9.69 22.25 0.22 -3.83 16 12 C -0.13 -3.94 9.96 22.39 0.22 -3.72 16 13 C 0.14 4.35 6.28 38.14 0.24 4.59 16 14 N -0.67 -14.98 5.35 -317.18 -1.70 -16.67 16 15 C 0.70 16.70 8.27 179.06 1.48 18.18 16 16 O -0.61 -19.79 13.70 -4.00 -0.05 -19.85 16 17 N -0.72 -11.12 4.06 -457.81 -1.86 -12.98 16 18 C 0.18 2.40 2.27 44.99 0.10 2.50 16 19 H 0.10 1.59 7.58 -2.39 -0.02 1.57 16 20 C 0.07 0.83 6.85 71.98 0.49 1.33 16 21 O -0.57 -5.96 10.27 -148.98 -1.53 -7.49 16 22 C -0.11 -1.19 2.99 -9.49 -0.03 -1.22 16 23 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 24 C -0.15 -1.52 6.48 31.58 0.20 -1.32 16 25 C 0.04 0.47 7.70 72.35 0.56 1.03 16 26 O -0.41 -6.61 11.53 -148.98 -1.72 -8.33 16 27 C 0.07 0.83 5.39 72.66 0.39 1.23 16 28 C -0.13 -4.57 8.65 22.39 0.19 -4.38 16 29 C -0.12 -4.85 9.69 22.25 0.22 -4.63 16 30 H 0.27 15.67 8.31 -92.72 -0.77 14.90 16 31 H 0.03 1.26 7.14 -2.38 -0.02 1.24 16 32 H 0.03 1.53 7.51 -2.39 -0.02 1.51 16 33 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 34 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 35 H 0.42 6.12 8.83 -92.71 -0.82 5.30 16 36 H 0.41 4.77 6.51 -92.71 -0.60 4.17 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.39 1.51 9.12 -74.06 -0.68 0.83 16 40 H 0.07 0.84 7.23 -2.38 -0.02 0.83 16 41 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.11 1.36 6.83 -2.38 -0.02 1.35 16 45 H 0.06 0.72 5.92 -2.39 -0.01 0.70 16 46 H 0.12 4.50 6.42 -2.91 -0.02 4.48 16 47 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -77.71 378.09 -0.79 -78.50 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -1.13 Total: 21.87 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 5.02 Total: -21.74 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -3.26 Total: -89.27 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -3.30 Total: -35.66 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.31 kcal Total: -77.71 -0.79 -78.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364166261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.726 kcal (2) G-P(sol) polarization free energy of solvation -77.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.82 seconds