Wall clock time and date at job start Tue Mar 31 2020 23:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00162 * 2 1 4 4 H 1.48504 * 109.47078 * 270.00100 * 3 2 1 5 5 H 1.48498 * 109.47236 * 29.99403 * 3 2 1 6 6 H 1.48496 * 109.47617 * 149.99650 * 3 2 1 7 7 C 1.37877 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00133 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00429 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.47442 * 180.02562 * 9 7 2 11 11 C 1.38280 * 119.92969 * 89.99810 * 10 9 7 12 12 C 1.38108 * 120.06995 * 180.02562 * 11 10 9 13 13 C 1.38864 * 119.93231 * 359.97438 * 12 11 10 14 14 N 1.39946 * 120.07394 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00189 * 146.84902 * 14 13 12 16 16 O 1.21581 * 119.99908 * 354.69083 * 15 14 13 17 17 N 1.34770 * 119.99926 * 174.68654 * 15 14 13 18 18 C 1.46504 * 119.99934 * 179.72339 * 17 15 14 19 19 H 1.08999 * 109.47133 * 35.27627 * 18 17 15 20 20 C 1.52995 * 109.47154 * 275.27392 * 18 17 15 21 21 O 1.42903 * 109.47522 * 295.00196 * 20 18 17 22 22 C 1.53004 * 109.46823 * 155.27610 * 18 17 15 23 23 H 1.08996 * 110.43613 * 58.91456 * 22 18 17 24 24 C 1.54808 * 110.48904 * 296.22111 * 22 18 17 25 25 C 1.54994 * 102.08999 * 220.44429 * 24 22 18 26 26 O 1.44384 * 103.49363 * 37.02770 * 25 24 22 27 27 C 1.43747 * 106.97077 * 319.93604 * 26 25 24 28 28 C 1.38878 * 119.85716 * 0.28133 * 13 12 11 29 29 C 1.38105 * 119.92576 * 359.41873 * 28 13 12 30 30 H 0.96992 * 120.00247 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46558 * 59.99795 * 9 7 2 32 32 H 1.08998 * 109.47265 * 300.00465 * 9 7 2 33 33 H 1.08000 * 119.96101 * 0.02644 * 11 10 9 34 34 H 1.08004 * 120.03753 * 180.02562 * 12 11 10 35 35 H 0.96998 * 119.99725 * 326.84820 * 14 13 12 36 36 H 0.96999 * 120.00382 * 0.02562 * 17 15 14 37 37 H 1.09002 * 109.46852 * 55.00318 * 20 18 17 38 38 H 1.09002 * 109.47370 * 174.99537 * 20 18 17 39 39 H 0.96698 * 113.99540 * 179.97438 * 21 20 18 40 40 H 1.08996 * 110.90940 * 338.64182 * 24 22 18 41 41 H 1.08995 * 110.90902 * 102.24836 * 24 22 18 42 42 H 1.08997 * 110.62152 * 278.51999 * 25 24 22 43 43 H 1.09006 * 110.62049 * 155.52308 * 25 24 22 44 44 H 1.08998 * 109.88034 * 267.09305 * 27 26 25 45 45 H 1.08996 * 110.00273 * 146.00598 * 27 26 25 46 46 H 1.08002 * 120.03309 * 179.69757 * 28 13 12 47 47 H 1.08008 * 119.96353 * 180.31877 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0139 -2.6149 0.0010 11 6 4.2443 -3.2651 -1.1974 12 6 4.7042 -4.5674 -1.2009 13 6 4.9357 -5.2237 0.0007 14 7 5.4022 -6.5431 0.0006 15 6 6.2283 -6.9659 0.9781 16 8 6.6453 -6.1779 1.8047 17 7 6.5920 -8.2622 1.0391 18 6 7.4948 -8.7206 2.0980 19 1 7.2890 -8.1686 3.0151 20 6 8.9443 -8.4796 1.6721 21 8 9.2490 -9.2929 0.5372 22 6 7.2767 -10.2151 2.3424 23 1 7.4599 -10.7808 1.4289 24 6 5.8433 -10.4751 2.8660 25 6 6.0849 -11.5554 3.9509 26 8 7.3384 -11.1590 4.5477 27 6 8.1903 -10.7147 3.4784 28 6 4.6983 -4.5697 1.2026 29 6 4.2443 -3.2654 1.1993 30 1 -0.4850 0.8400 -0.0004 31 1 3.8745 -0.6800 0.8912 32 1 3.8753 -0.6804 -0.8888 33 1 4.0645 -2.7540 -2.1317 34 1 4.8844 -5.0746 -2.1373 35 1 5.1310 -7.1533 -0.7029 36 1 6.2596 -8.8908 0.3794 37 1 9.0769 -7.4293 1.4124 38 1 9.6123 -8.7377 2.4939 39 1 10.1539 -9.1911 0.2119 40 1 5.4194 -9.5717 3.3043 41 1 5.2025 -10.8581 2.0718 42 1 6.1710 -12.5427 3.4971 43 1 5.2855 -11.5408 4.6919 44 1 8.8030 -11.5435 3.1239 45 1 8.8297 -9.9025 3.8241 46 1 4.8727 -5.0791 2.1389 47 1 4.0644 -2.7544 2.1337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364167019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:30 Heat of formation + Delta-G solvation = -99.138992 kcal Electronic energy + Delta-G solvation = -28229.995303 eV Core-core repulsion = 24184.668491 eV Total energy + Delta-G solvation = -4045.326812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86001 -39.89064 -38.47083 -37.37581 -35.27551 -34.77547 -33.04148 -32.33098 -30.81885 -30.33222 -30.22683 -27.91173 -26.82780 -24.36290 -22.99688 -22.41038 -22.36597 -21.03715 -20.80574 -20.04049 -18.56576 -17.90111 -17.49886 -16.85856 -16.74230 -16.50206 -15.75025 -15.46808 -15.27971 -14.92453 -14.80131 -14.48670 -14.22945 -14.06039 -13.88608 -13.38164 -13.20135 -12.86116 -12.81861 -12.58455 -12.41978 -12.35267 -11.92677 -11.81311 -11.61995 -11.52855 -11.35944 -11.07470 -10.85050 -10.53032 -10.39691 -10.29081 -10.14269 -10.09929 -9.91987 -9.55526 -9.35680 -9.25670 -8.56170 -8.30828 -7.36128 -6.05295 -4.03986 1.91093 2.04388 2.46594 3.12029 3.30500 3.38418 3.42138 3.51160 3.82951 3.95957 4.07475 4.13072 4.43795 4.47398 4.49681 4.67599 4.74751 4.80358 4.95527 5.03525 5.15575 5.25666 5.26538 5.28984 5.37774 5.41338 5.45231 5.51588 5.55845 5.72109 5.88913 5.99912 6.02074 6.15207 6.21320 6.43288 6.54180 6.60711 6.86397 6.98730 7.02272 7.08094 7.11949 7.17245 7.62409 7.64437 7.74687 7.84772 8.46657 8.52382 9.00296 9.55314 11.07676 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022987 B = 0.002061 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.784319 B =13580.710925 C =14056.743436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.041 4.041 11 C -0.105 4.105 12 C -0.145 4.145 13 C 0.128 3.872 14 N -0.681 5.681 15 C 0.703 3.297 16 O -0.574 6.574 17 N -0.734 5.734 18 C 0.179 3.821 19 H 0.105 0.895 20 C 0.057 3.943 21 O -0.570 6.570 22 C -0.125 4.125 23 H 0.098 0.902 24 C -0.151 4.151 25 C 0.046 3.954 26 O -0.378 6.378 27 C 0.056 3.944 28 C -0.116 4.116 29 C -0.104 4.104 30 H 0.264 0.736 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.402 0.598 36 H 0.398 0.602 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.379 0.621 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.126 0.874 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.997 -25.032 1.809 30.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.042 4.042 11 C -0.123 4.123 12 C -0.166 4.166 13 C 0.035 3.965 14 N -0.328 5.328 15 C 0.403 3.597 16 O -0.451 6.451 17 N -0.389 5.389 18 C 0.073 3.927 19 H 0.123 0.877 20 C -0.022 4.022 21 O -0.375 6.375 22 C -0.145 4.145 23 H 0.117 0.883 24 C -0.189 4.189 25 C -0.031 4.031 26 O -0.297 6.297 27 C -0.022 4.022 28 C -0.136 4.136 29 C -0.123 4.123 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.236 0.764 36 H 0.232 0.768 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.226 0.774 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.144 0.856 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.665 -24.422 2.922 30.283 hybrid contribution 0.548 0.470 -1.121 1.333 sum 18.213 -23.953 1.802 30.144 Atomic orbital electron populations 1.69897 1.06250 1.26932 1.50868 1.25005 0.94745 0.99033 0.94563 0.86804 0.80450 0.83664 0.78599 1.20205 1.21297 1.18886 1.20948 0.88305 0.94618 1.51023 0.90819 1.18801 0.97383 0.88744 0.97339 1.20278 0.93632 0.98101 0.92145 1.20830 0.99531 0.93602 0.98380 1.20692 1.04925 0.95425 0.95546 1.17300 1.01399 0.83449 0.94346 1.42475 1.49716 1.11973 1.28597 1.15921 0.79090 0.82432 0.82210 1.90957 1.59044 1.53336 1.41724 1.45002 1.52357 1.08070 1.33436 1.20918 0.87024 0.93706 0.91029 0.87697 1.22764 0.96076 0.94945 0.88410 1.86423 1.35617 1.67087 1.48367 1.22744 0.95639 0.95763 1.00319 0.88342 1.23234 0.96314 1.00316 0.99025 1.23575 0.86780 0.96931 0.95765 1.88901 1.25661 1.84556 1.30553 1.23176 0.93038 0.99152 0.86785 1.20995 1.00211 0.95581 0.96855 1.20956 0.99032 0.93922 0.98354 0.92647 0.95404 0.95880 0.85960 0.86758 0.76392 0.76848 0.92454 0.92639 0.77412 0.89941 0.89988 0.92104 0.88788 0.91848 0.89594 0.85648 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.51 -14.56 9.65 -34.44 -0.33 -14.89 16 8 H 0.07 2.29 7.98 -52.48 -0.42 1.87 16 9 C 0.01 0.35 4.17 -29.03 -0.12 0.23 16 10 C -0.04 -0.88 5.07 -104.59 -0.53 -1.41 16 11 C -0.10 -1.98 9.69 -39.61 -0.38 -2.36 16 12 C -0.15 -2.34 9.96 -39.40 -0.39 -2.73 16 13 C 0.13 2.09 6.28 -83.68 -0.53 1.56 16 14 N -0.68 -8.45 5.35 -14.22 -0.08 -8.52 16 15 C 0.70 9.09 8.26 -86.92 -0.72 8.37 16 16 O -0.57 -9.71 13.70 5.29 0.07 -9.63 16 17 N -0.73 -6.47 4.77 -58.68 -0.28 -6.75 16 18 C 0.18 1.46 1.68 -67.93 -0.11 1.35 16 19 H 0.11 1.06 7.57 -51.93 -0.39 0.67 16 20 C 0.06 0.43 6.52 37.15 0.24 0.67 16 21 O -0.57 -3.71 12.78 -35.23 -0.45 -4.16 16 22 C -0.13 -0.80 2.44 -89.09 -0.22 -1.02 16 23 H 0.10 0.60 7.65 -51.93 -0.40 0.20 16 24 C -0.15 -0.96 6.46 -24.73 -0.16 -1.12 16 25 C 0.05 0.30 7.72 38.21 0.29 0.60 16 26 O -0.38 -3.44 11.52 -35.23 -0.41 -3.85 16 27 C 0.06 0.38 6.95 37.73 0.26 0.65 16 28 C -0.12 -2.14 8.65 -39.39 -0.34 -2.48 16 29 C -0.10 -2.10 9.69 -39.61 -0.38 -2.48 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 32 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 33 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.40 3.55 8.83 -40.82 -0.36 3.19 16 36 H 0.40 2.60 8.62 -40.82 -0.35 2.25 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.32 6.69 -51.93 -0.35 -0.03 16 39 H 0.38 1.13 9.12 45.56 0.42 1.54 16 40 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.55 6.36 -51.93 -0.33 0.22 16 46 H 0.13 2.31 6.42 -52.49 -0.34 1.97 16 47 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -35.36 383.91 -9.01 -44.36 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.24 Total: 6.00 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -3.52 Total: -13.21 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.42 Total: -42.17 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.78 Total: -17.64 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.36 -9.01 -44.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364167019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.776 kcal (2) G-P(sol) polarization free energy of solvation -35.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds