Wall clock time and date at job start Tue Mar 31 2020 23:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00162 * 2 1 4 4 H 1.48504 * 109.47078 * 270.00100 * 3 2 1 5 5 H 1.48498 * 109.47236 * 29.99403 * 3 2 1 6 6 H 1.48496 * 109.47617 * 149.99650 * 3 2 1 7 7 C 1.37877 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00133 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00429 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.47442 * 180.02562 * 9 7 2 11 11 C 1.38280 * 119.92969 * 89.99810 * 10 9 7 12 12 C 1.38108 * 120.06995 * 180.02562 * 11 10 9 13 13 C 1.38864 * 119.93231 * 359.97438 * 12 11 10 14 14 N 1.39946 * 120.07394 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00189 * 146.84902 * 14 13 12 16 16 O 1.21581 * 119.99908 * 354.69083 * 15 14 13 17 17 N 1.34770 * 119.99926 * 174.68654 * 15 14 13 18 18 C 1.46504 * 119.99934 * 179.72339 * 17 15 14 19 19 H 1.08999 * 109.47133 * 35.27627 * 18 17 15 20 20 C 1.52995 * 109.47154 * 275.27392 * 18 17 15 21 21 O 1.42903 * 109.47522 * 295.00196 * 20 18 17 22 22 C 1.53004 * 109.46823 * 155.27610 * 18 17 15 23 23 H 1.08996 * 110.43613 * 58.91456 * 22 18 17 24 24 C 1.54808 * 110.48904 * 296.22111 * 22 18 17 25 25 C 1.54994 * 102.08999 * 220.44429 * 24 22 18 26 26 O 1.44384 * 103.49363 * 37.02770 * 25 24 22 27 27 C 1.43747 * 106.97077 * 319.93604 * 26 25 24 28 28 C 1.38878 * 119.85716 * 0.28133 * 13 12 11 29 29 C 1.38105 * 119.92576 * 359.41873 * 28 13 12 30 30 H 0.96992 * 120.00247 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46558 * 59.99795 * 9 7 2 32 32 H 1.08998 * 109.47265 * 300.00465 * 9 7 2 33 33 H 1.08000 * 119.96101 * 0.02644 * 11 10 9 34 34 H 1.08004 * 120.03753 * 180.02562 * 12 11 10 35 35 H 0.96998 * 119.99725 * 326.84820 * 14 13 12 36 36 H 0.96999 * 120.00382 * 0.02562 * 17 15 14 37 37 H 1.09002 * 109.46852 * 55.00318 * 20 18 17 38 38 H 1.09002 * 109.47370 * 174.99537 * 20 18 17 39 39 H 0.96698 * 113.99540 * 179.97438 * 21 20 18 40 40 H 1.08996 * 110.90940 * 338.64182 * 24 22 18 41 41 H 1.08995 * 110.90902 * 102.24836 * 24 22 18 42 42 H 1.08997 * 110.62152 * 278.51999 * 25 24 22 43 43 H 1.09006 * 110.62049 * 155.52308 * 25 24 22 44 44 H 1.08998 * 109.88034 * 267.09305 * 27 26 25 45 45 H 1.08996 * 110.00273 * 146.00598 * 27 26 25 46 46 H 1.08002 * 120.03309 * 179.69757 * 28 13 12 47 47 H 1.08008 * 119.96353 * 180.31877 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0139 -2.6149 0.0010 11 6 4.2443 -3.2651 -1.1974 12 6 4.7042 -4.5674 -1.2009 13 6 4.9357 -5.2237 0.0007 14 7 5.4022 -6.5431 0.0006 15 6 6.2283 -6.9659 0.9781 16 8 6.6453 -6.1779 1.8047 17 7 6.5920 -8.2622 1.0391 18 6 7.4948 -8.7206 2.0980 19 1 7.2890 -8.1686 3.0151 20 6 8.9443 -8.4796 1.6721 21 8 9.2490 -9.2929 0.5372 22 6 7.2767 -10.2151 2.3424 23 1 7.4599 -10.7808 1.4289 24 6 5.8433 -10.4751 2.8660 25 6 6.0849 -11.5554 3.9509 26 8 7.3384 -11.1590 4.5477 27 6 8.1903 -10.7147 3.4784 28 6 4.6983 -4.5697 1.2026 29 6 4.2443 -3.2654 1.1993 30 1 -0.4850 0.8400 -0.0004 31 1 3.8745 -0.6800 0.8912 32 1 3.8753 -0.6804 -0.8888 33 1 4.0645 -2.7540 -2.1317 34 1 4.8844 -5.0746 -2.1373 35 1 5.1310 -7.1533 -0.7029 36 1 6.2596 -8.8908 0.3794 37 1 9.0769 -7.4293 1.4124 38 1 9.6123 -8.7377 2.4939 39 1 10.1539 -9.1911 0.2119 40 1 5.4194 -9.5717 3.3043 41 1 5.2025 -10.8581 2.0718 42 1 6.1710 -12.5427 3.4971 43 1 5.2855 -11.5408 4.6919 44 1 8.8030 -11.5435 3.1239 45 1 8.8297 -9.9025 3.8241 46 1 4.8727 -5.0791 2.1389 47 1 4.0644 -2.7544 2.1337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364167019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:25 Heat of formation + Delta-G solvation = -126.711413 kcal Electronic energy + Delta-G solvation = -28231.190933 eV Core-core repulsion = 24184.668491 eV Total energy + Delta-G solvation = -4046.522442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 14.30 seconds Orbital eigenvalues (eV) -41.82729 -40.67985 -39.69240 -38.06114 -36.32443 -35.81125 -34.92369 -33.30785 -32.27114 -31.76133 -30.96674 -28.90539 -28.12056 -25.29953 -24.40931 -23.81999 -23.02917 -22.25916 -21.60361 -21.30057 -19.53675 -18.94882 -18.70878 -18.30459 -17.61548 -17.08210 -16.79557 -16.61506 -16.19090 -16.03998 -15.90496 -15.71425 -15.36116 -15.10776 -14.91276 -14.71372 -14.35403 -14.28465 -13.90259 -13.88602 -13.47591 -13.43170 -13.20855 -13.13671 -12.53187 -12.49881 -12.34547 -12.16263 -11.96517 -11.93034 -11.74483 -11.64987 -11.59313 -11.30939 -11.02544 -10.86801 -10.77060 -10.65147 -10.15786 -9.75282 -8.77669 -8.28276 -6.32841 0.48815 0.58596 1.37094 1.39472 1.51415 1.51498 2.04715 2.36700 2.97785 3.00618 3.05851 3.12348 3.32989 3.48332 3.58284 3.97080 4.04818 4.12402 4.15762 4.22573 4.26151 4.32895 4.41897 4.47764 4.55658 4.59336 4.64920 4.71334 4.74877 4.79391 4.87234 4.92140 4.98877 5.06179 5.09319 5.17192 5.26240 5.39158 5.43031 5.45591 5.57818 5.66014 5.91277 5.96702 6.02854 6.18537 6.31354 6.73167 6.83589 6.97052 7.30333 7.46880 8.88087 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022987 B = 0.002061 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.784319 B =13580.710925 C =14056.743436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.517 4.517 8 H 0.029 0.971 9 C 0.021 3.979 10 C -0.077 4.077 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.142 3.858 14 N -0.669 5.669 15 C 0.700 3.300 16 O -0.616 6.616 17 N -0.712 5.712 18 C 0.176 3.824 19 H 0.081 0.919 20 C 0.065 3.935 21 O -0.574 6.574 22 C -0.112 4.112 23 H 0.112 0.888 24 C -0.149 4.149 25 C 0.042 3.958 26 O -0.406 6.406 27 C 0.053 3.947 28 C -0.126 4.126 29 C -0.118 4.118 30 H 0.267 0.733 31 H 0.025 0.975 32 H 0.033 0.967 33 H 0.131 0.869 34 H 0.158 0.842 35 H 0.423 0.577 36 H 0.413 0.587 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.396 0.604 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.121 0.879 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.116 -26.792 0.229 33.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.173 1.173 7 C -0.555 4.555 8 H 0.047 0.953 9 C -0.016 4.016 10 C -0.077 4.077 11 C -0.129 4.129 12 C -0.153 4.153 13 C 0.047 3.953 14 N -0.317 5.317 15 C 0.401 3.599 16 O -0.495 6.495 17 N -0.368 5.368 18 C 0.070 3.930 19 H 0.099 0.901 20 C -0.014 4.014 21 O -0.381 6.381 22 C -0.131 4.131 23 H 0.130 0.870 24 C -0.187 4.187 25 C -0.034 4.034 26 O -0.325 6.325 27 C -0.024 4.024 28 C -0.147 4.147 29 C -0.137 4.137 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.149 0.851 34 H 0.175 0.825 35 H 0.261 0.739 36 H 0.250 0.750 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.246 0.754 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.139 0.861 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 19.810 -26.265 1.305 32.925 hybrid contribution -0.091 0.802 -0.608 1.010 sum 19.719 -25.464 0.697 32.214 Atomic orbital electron populations 1.70052 1.08230 1.28205 1.52456 1.25977 0.95625 1.03343 0.94090 0.85658 0.79383 0.78205 0.79449 1.18671 1.20937 1.17293 1.21167 0.90764 0.93002 1.50529 0.95262 1.18642 0.94336 0.91156 0.97459 1.20155 0.96556 0.97302 0.93723 1.21016 0.99347 0.94879 0.97693 1.21001 1.02963 0.94263 0.97094 1.17367 0.99442 0.84791 0.93670 1.42283 1.49324 1.10877 1.29245 1.16082 0.78917 0.83266 0.81646 1.90942 1.60534 1.54807 1.43235 1.44831 1.51613 1.06727 1.33594 1.20972 0.87466 0.94642 0.89882 0.90050 1.22571 0.95777 0.93680 0.89400 1.86371 1.37287 1.66554 1.47933 1.22645 0.95569 0.94173 1.00688 0.87017 1.23218 0.96512 0.99529 0.99451 1.23720 0.86087 0.97681 0.95912 1.88872 1.26784 1.84875 1.32015 1.23286 0.92982 0.99725 0.86447 1.21001 1.00722 0.95095 0.97873 1.20945 0.99988 0.94894 0.97862 0.92397 0.95626 0.94848 0.85061 0.82478 0.73889 0.75027 0.94977 0.90869 0.75449 0.91925 0.88149 0.90441 0.88617 0.90430 0.89590 0.86069 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.03 13.96 21.45 0.30 -59.74 16 2 C 0.01 0.38 5.47 84.66 0.46 0.85 16 3 Si 0.95 44.61 27.47 68.60 1.88 46.49 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 7 C -0.52 -30.44 9.65 25.60 0.25 -30.19 16 8 H 0.03 1.92 7.98 -2.91 -0.02 1.90 16 9 C 0.02 1.04 4.17 29.10 0.12 1.16 16 10 C -0.08 -3.33 5.07 -19.84 -0.10 -3.43 16 11 C -0.11 -4.07 9.69 22.25 0.22 -3.86 16 12 C -0.13 -3.94 9.96 22.39 0.22 -3.72 16 13 C 0.14 4.40 6.28 38.15 0.24 4.64 16 14 N -0.67 -14.98 5.35 -317.18 -1.70 -16.68 16 15 C 0.70 17.14 8.26 179.06 1.48 18.61 16 16 O -0.62 -20.78 13.70 -3.97 -0.05 -20.84 16 17 N -0.71 -11.16 4.77 -457.82 -2.18 -13.34 16 18 C 0.18 2.65 1.68 44.99 0.08 2.72 16 19 H 0.08 1.66 7.57 -2.39 -0.02 1.64 16 20 C 0.06 0.86 6.52 71.98 0.47 1.33 16 21 O -0.57 -5.85 12.78 -148.98 -1.90 -7.75 16 22 C -0.11 -1.19 2.44 -9.80 -0.02 -1.21 16 23 H 0.11 0.96 7.65 -2.39 -0.02 0.94 16 24 C -0.15 -1.65 6.46 31.89 0.21 -1.44 16 25 C 0.04 0.49 7.72 72.66 0.56 1.05 16 26 O -0.41 -6.97 11.52 -148.98 -1.72 -8.69 16 27 C 0.05 0.63 6.95 72.36 0.50 1.13 16 28 C -0.13 -4.70 8.65 22.39 0.19 -4.51 16 29 C -0.12 -4.92 9.69 22.25 0.22 -4.71 16 30 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 31 H 0.03 1.24 7.14 -2.38 -0.02 1.23 16 32 H 0.03 1.54 7.51 -2.39 -0.02 1.53 16 33 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 34 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.42 5.92 8.83 -92.71 -0.82 5.10 16 36 H 0.41 4.08 8.62 -92.71 -0.80 3.28 16 37 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 0.72 6.69 -2.39 -0.02 0.70 16 39 H 0.40 1.23 9.12 -74.06 -0.68 0.55 16 40 H 0.06 0.96 7.86 -2.39 -0.02 0.94 16 41 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.10 1.04 8.14 -2.38 -0.02 1.03 16 44 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.09 0.99 6.36 -2.39 -0.02 0.98 16 46 H 0.12 4.58 6.42 -2.91 -0.02 4.56 16 47 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -79.78 383.91 -1.61 -81.39 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -1.33 Total: 20.70 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 5.09 Total: -21.56 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -3.58 Total: -89.76 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -3.67 Total: -37.27 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -79.78 -1.61 -81.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364167019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.320 kcal (2) G-P(sol) polarization free energy of solvation -79.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.30 seconds