Wall clock time and date at job start Tue Mar 31 2020 23:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99888 * 2 1 4 4 H 1.48506 * 109.46902 * 240.00155 * 3 2 1 5 5 H 1.48495 * 109.47335 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47292 * 120.00322 * 3 2 1 7 7 C 1.37871 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00115 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00082 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47523 * 180.02562 * 9 7 2 11 11 C 1.38281 * 119.93235 * 89.99460 * 10 9 7 12 12 C 1.38107 * 120.06815 * 179.97438 * 11 10 9 13 13 C 1.38869 * 119.93549 * 0.02562 * 12 11 10 14 14 N 1.39945 * 120.07180 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99652 * 35.09241 * 14 13 12 16 16 O 1.21582 * 120.00420 * 355.37690 * 15 14 13 17 17 N 1.34787 * 119.99804 * 175.37247 * 15 14 13 18 18 C 1.46495 * 119.99737 * 179.97438 * 17 15 14 19 19 H 1.08997 * 109.47863 * 325.00110 * 18 17 15 20 20 C 1.52999 * 109.47167 * 85.00669 * 18 17 15 21 21 O 1.42901 * 109.47417 * 64.99500 * 20 18 17 22 22 C 1.53004 * 109.47023 * 205.00187 * 18 17 15 23 23 H 1.08995 * 110.75206 * 299.30497 * 22 18 17 24 24 C 1.55306 * 110.84643 * 62.77365 * 22 18 17 25 25 C 1.55203 * 100.82832 * 152.18041 * 24 22 18 26 26 O 1.43650 * 105.25827 * 323.81803 * 25 24 22 27 27 C 1.43237 * 109.97217 * 24.28250 * 26 25 24 28 28 C 1.38862 * 119.85681 * 0.25135 * 13 12 11 29 29 C 1.38118 * 119.92977 * 359.49106 * 28 13 12 30 30 H 0.96996 * 120.00036 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47229 * 60.00454 * 9 7 2 32 32 H 1.08997 * 109.47494 * 300.00015 * 9 7 2 33 33 H 1.08001 * 119.96111 * 0.02562 * 11 10 9 34 34 H 1.08008 * 120.03335 * 179.97438 * 12 11 10 35 35 H 0.96996 * 120.00341 * 215.08821 * 14 13 12 36 36 H 0.97003 * 119.99667 * 0.28063 * 17 15 14 37 37 H 1.09002 * 109.47201 * 184.99427 * 20 18 17 38 38 H 1.08998 * 109.47094 * 304.99811 * 20 18 17 39 39 H 0.96700 * 114.00231 * 180.02562 * 21 20 18 40 40 H 1.09004 * 111.12752 * 270.24460 * 24 22 18 41 41 H 1.09004 * 111.12430 * 34.40442 * 24 22 18 42 42 H 1.08997 * 110.37121 * 204.79699 * 25 24 22 43 43 H 1.08997 * 110.12928 * 82.70926 * 25 24 22 44 44 H 1.08997 * 109.82960 * 238.77485 * 27 26 25 45 45 H 1.08997 * 109.90487 * 117.84487 * 27 26 25 46 46 H 1.08000 * 120.03635 * 179.71846 * 28 13 12 47 47 H 1.08001 * 119.96380 * 180.25175 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6788 -4.1690 1.1978 12 6 3.5758 -5.2191 1.2011 13 6 4.0278 -5.7481 -0.0007 14 7 4.9372 -6.8118 -0.0007 15 6 4.8650 -7.7600 0.9544 16 8 4.0654 -7.6477 1.8634 17 7 5.6793 -8.8328 0.9019 18 6 5.6012 -9.8631 1.9403 19 1 5.3715 -9.3968 2.8984 20 6 4.5009 -10.8645 1.5836 21 8 4.8589 -11.5596 0.3874 22 6 6.9428 -10.5925 2.0369 23 1 7.1875 -11.0776 1.0921 24 6 8.0725 -9.6171 2.4663 25 6 9.0455 -10.5937 3.1792 26 8 8.2030 -11.5475 3.8456 27 6 6.9299 -11.6157 3.1929 28 6 3.5800 -5.2155 -1.2024 29 6 2.6789 -4.1688 -1.1990 30 1 -0.4850 0.8400 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 2.3265 -3.7574 2.1321 34 1 3.9260 -5.6280 2.1374 35 1 5.6193 -6.8668 -0.6881 36 1 6.3200 -8.9204 0.1788 37 1 4.3825 -11.5796 2.3977 38 1 3.5623 -10.3327 1.4276 39 1 4.2052 -12.2120 0.1009 40 1 8.5420 -9.1534 1.5987 41 1 7.6982 -8.8626 3.1582 42 1 9.6574 -10.0575 3.9046 43 1 9.6780 -11.0946 2.4464 44 1 6.1384 -11.3656 3.8993 45 1 6.7690 -12.6185 2.7972 46 1 3.9332 -5.6217 -2.1387 47 1 2.3271 -3.7568 -2.1333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364167030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:59 Heat of formation + Delta-G solvation = -103.916517 kcal Electronic energy + Delta-G solvation = -28152.151987 eV Core-core repulsion = 24106.618006 eV Total energy + Delta-G solvation = -4045.533981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.82936 -39.86635 -38.42474 -37.36112 -35.26540 -34.74528 -33.09532 -32.36497 -30.67054 -30.26239 -30.04134 -27.92676 -26.47868 -24.24135 -23.12074 -22.47720 -22.31635 -21.15733 -20.87081 -20.10925 -18.56541 -17.88477 -17.48735 -16.92871 -16.43580 -16.27501 -15.65222 -15.46773 -15.14022 -14.94383 -14.68459 -14.56154 -14.24806 -14.19360 -13.84189 -13.65976 -13.06309 -12.79681 -12.76575 -12.58097 -12.47648 -12.04376 -11.96022 -11.80146 -11.41388 -11.29739 -11.25572 -11.20813 -10.82294 -10.62101 -10.45193 -10.34814 -10.13254 -9.95902 -9.86075 -9.44464 -9.33909 -9.22925 -8.39952 -8.24702 -7.34247 -6.01398 -4.05431 1.97228 2.10868 2.47090 3.12981 3.33218 3.37296 3.40508 3.41688 3.82056 3.95460 4.07909 4.10511 4.40523 4.49430 4.59950 4.66937 4.73048 4.77639 4.94059 5.03157 5.16583 5.24908 5.29023 5.32366 5.39973 5.43406 5.46539 5.47388 5.62191 5.75800 5.97112 6.07474 6.10763 6.23275 6.24706 6.53109 6.58920 6.70409 6.97154 7.06753 7.19478 7.20669 7.25401 7.54471 7.75720 7.86346 7.90470 7.94293 8.35146 8.48459 8.99666 9.58029 11.08125 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023222 B = 0.002011 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.451995 B =13920.115763 C =14468.032483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.044 4.044 11 C -0.109 4.109 12 C -0.116 4.116 13 C 0.120 3.880 14 N -0.680 5.680 15 C 0.703 3.297 16 O -0.574 6.574 17 N -0.734 5.734 18 C 0.181 3.819 19 H 0.105 0.895 20 C 0.059 3.941 21 O -0.570 6.570 22 C -0.126 4.126 23 H 0.100 0.900 24 C -0.151 4.151 25 C 0.051 3.949 26 O -0.384 6.384 27 C 0.061 3.939 28 C -0.145 4.145 29 C -0.109 4.109 30 H 0.262 0.738 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.401 0.599 36 H 0.397 0.603 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.379 0.621 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.113 0.887 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.714 -25.380 1.246 29.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.044 4.044 11 C -0.128 4.128 12 C -0.136 4.136 13 C 0.027 3.973 14 N -0.327 5.327 15 C 0.404 3.596 16 O -0.451 6.451 17 N -0.389 5.389 18 C 0.075 3.925 19 H 0.122 0.878 20 C -0.021 4.021 21 O -0.375 6.375 22 C -0.145 4.145 23 H 0.119 0.881 24 C -0.189 4.189 25 C -0.025 4.025 26 O -0.303 6.303 27 C -0.016 4.016 28 C -0.165 4.165 29 C -0.128 4.128 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.235 0.765 36 H 0.231 0.769 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.226 0.774 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.131 0.869 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.413 -24.939 2.327 29.410 hybrid contribution 0.488 0.642 -1.036 1.313 sum 15.901 -24.297 1.291 29.067 Atomic orbital electron populations 1.69948 1.06016 1.26879 1.50509 1.25018 0.94889 0.99231 0.95270 0.86599 0.79524 0.82868 0.78691 1.20210 1.21271 1.20184 1.21029 0.93000 0.89901 1.50949 0.92531 1.18341 0.92579 0.89591 0.98359 1.20710 0.96504 0.95325 0.91890 1.21013 0.97627 0.95687 0.98464 1.21142 0.99274 0.96123 0.97077 1.17295 0.95542 0.90138 0.94325 1.42424 1.34965 1.24225 1.31062 1.15927 0.81425 0.79520 0.82773 1.90942 1.40038 1.78710 1.35414 1.44988 1.41734 1.22011 1.30201 1.20822 0.93160 0.86445 0.92044 0.87759 1.22719 0.98033 0.94173 0.87129 1.86416 1.50008 1.57437 1.43661 1.22929 0.94558 0.96309 1.00752 0.88126 1.23389 0.95872 0.98254 1.01396 1.23423 0.93298 0.89440 0.96384 1.88420 1.24967 1.62122 1.54819 1.23097 0.86463 0.98713 0.93291 1.20719 1.00379 0.99952 0.95465 1.20863 0.97439 0.95935 0.98520 0.92816 0.95351 0.95330 0.86164 0.85275 0.76481 0.76868 0.92696 0.92387 0.77354 0.89703 0.89946 0.89573 0.92110 0.91014 0.90944 0.86943 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.36 9.09 -34.44 -0.31 -14.68 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.05 1.25 5.10 -29.03 -0.15 1.10 16 10 C -0.04 -0.97 5.07 -104.59 -0.53 -1.50 16 11 C -0.11 -2.26 9.69 -39.61 -0.38 -2.64 16 12 C -0.12 -2.17 8.69 -39.40 -0.34 -2.51 16 13 C 0.12 1.98 6.30 -83.69 -0.53 1.45 16 14 N -0.68 -8.49 5.34 -14.22 -0.08 -8.56 16 15 C 0.70 9.10 8.37 -86.91 -0.73 8.37 16 16 O -0.57 -9.71 13.44 5.29 0.07 -9.64 16 17 N -0.73 -6.43 4.76 -58.68 -0.28 -6.71 16 18 C 0.18 1.46 1.75 -67.93 -0.12 1.34 16 19 H 0.10 1.00 7.55 -51.93 -0.39 0.61 16 20 C 0.06 0.45 6.59 37.16 0.24 0.69 16 21 O -0.57 -3.89 12.75 -35.23 -0.45 -4.34 16 22 C -0.13 -0.80 2.36 -88.67 -0.21 -1.01 16 23 H 0.10 0.64 7.61 -51.93 -0.40 0.25 16 24 C -0.15 -0.93 6.38 -24.34 -0.16 -1.08 16 25 C 0.05 0.33 7.78 38.32 0.30 0.63 16 26 O -0.38 -3.46 11.36 -35.23 -0.40 -3.86 16 27 C 0.06 0.43 6.59 37.88 0.25 0.68 16 28 C -0.14 -2.37 9.97 -39.39 -0.39 -2.76 16 29 C -0.11 -2.11 9.69 -39.61 -0.38 -2.50 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 34 H 0.13 2.42 6.22 -52.48 -0.33 2.09 16 35 H 0.40 3.55 8.84 -40.82 -0.36 3.19 16 36 H 0.40 2.58 8.62 -40.82 -0.35 2.23 16 37 H 0.05 0.32 7.47 -51.93 -0.39 -0.07 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.38 1.27 9.12 45.56 0.42 1.68 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.60 8.04 -51.93 -0.42 0.18 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.48 7.64 -51.93 -0.40 0.08 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 47 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 388.91 15.07 5.86 5.86 Total: -1.00 -34.46 388.91 -9.47 -43.93 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -6.38 Total: 5.45 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -3.54 Total: -12.89 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.38 Total: -41.11 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.78 Total: -17.84 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.46 -9.47 -43.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364167030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.986 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds