Wall clock time and date at job start Tue Mar 31 2020 23:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99888 * 2 1 4 4 H 1.48506 * 109.46902 * 240.00155 * 3 2 1 5 5 H 1.48495 * 109.47335 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47292 * 120.00322 * 3 2 1 7 7 C 1.37871 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00115 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00082 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47523 * 180.02562 * 9 7 2 11 11 C 1.38281 * 119.93235 * 89.99460 * 10 9 7 12 12 C 1.38107 * 120.06815 * 179.97438 * 11 10 9 13 13 C 1.38869 * 119.93549 * 0.02562 * 12 11 10 14 14 N 1.39945 * 120.07180 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99652 * 35.09241 * 14 13 12 16 16 O 1.21582 * 120.00420 * 355.37690 * 15 14 13 17 17 N 1.34787 * 119.99804 * 175.37247 * 15 14 13 18 18 C 1.46495 * 119.99737 * 179.97438 * 17 15 14 19 19 H 1.08997 * 109.47863 * 325.00110 * 18 17 15 20 20 C 1.52999 * 109.47167 * 85.00669 * 18 17 15 21 21 O 1.42901 * 109.47417 * 64.99500 * 20 18 17 22 22 C 1.53004 * 109.47023 * 205.00187 * 18 17 15 23 23 H 1.08995 * 110.75206 * 299.30497 * 22 18 17 24 24 C 1.55306 * 110.84643 * 62.77365 * 22 18 17 25 25 C 1.55203 * 100.82832 * 152.18041 * 24 22 18 26 26 O 1.43650 * 105.25827 * 323.81803 * 25 24 22 27 27 C 1.43237 * 109.97217 * 24.28250 * 26 25 24 28 28 C 1.38862 * 119.85681 * 0.25135 * 13 12 11 29 29 C 1.38118 * 119.92977 * 359.49106 * 28 13 12 30 30 H 0.96996 * 120.00036 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47229 * 60.00454 * 9 7 2 32 32 H 1.08997 * 109.47494 * 300.00015 * 9 7 2 33 33 H 1.08001 * 119.96111 * 0.02562 * 11 10 9 34 34 H 1.08008 * 120.03335 * 179.97438 * 12 11 10 35 35 H 0.96996 * 120.00341 * 215.08821 * 14 13 12 36 36 H 0.97003 * 119.99667 * 0.28063 * 17 15 14 37 37 H 1.09002 * 109.47201 * 184.99427 * 20 18 17 38 38 H 1.08998 * 109.47094 * 304.99811 * 20 18 17 39 39 H 0.96700 * 114.00231 * 180.02562 * 21 20 18 40 40 H 1.09004 * 111.12752 * 270.24460 * 24 22 18 41 41 H 1.09004 * 111.12430 * 34.40442 * 24 22 18 42 42 H 1.08997 * 110.37121 * 204.79699 * 25 24 22 43 43 H 1.08997 * 110.12928 * 82.70926 * 25 24 22 44 44 H 1.08997 * 109.82960 * 238.77485 * 27 26 25 45 45 H 1.08997 * 109.90487 * 117.84487 * 27 26 25 46 46 H 1.08000 * 120.03635 * 179.71846 * 28 13 12 47 47 H 1.08001 * 119.96380 * 180.25175 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6788 -4.1690 1.1978 12 6 3.5758 -5.2191 1.2011 13 6 4.0278 -5.7481 -0.0007 14 7 4.9372 -6.8118 -0.0007 15 6 4.8650 -7.7600 0.9544 16 8 4.0654 -7.6477 1.8634 17 7 5.6793 -8.8328 0.9019 18 6 5.6012 -9.8631 1.9403 19 1 5.3715 -9.3968 2.8984 20 6 4.5009 -10.8645 1.5836 21 8 4.8589 -11.5596 0.3874 22 6 6.9428 -10.5925 2.0369 23 1 7.1875 -11.0776 1.0921 24 6 8.0725 -9.6171 2.4663 25 6 9.0455 -10.5937 3.1792 26 8 8.2030 -11.5475 3.8456 27 6 6.9299 -11.6157 3.1929 28 6 3.5800 -5.2155 -1.2024 29 6 2.6789 -4.1688 -1.1990 30 1 -0.4850 0.8400 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 2.3265 -3.7574 2.1321 34 1 3.9260 -5.6280 2.1374 35 1 5.6193 -6.8668 -0.6881 36 1 6.3200 -8.9204 0.1788 37 1 4.3825 -11.5796 2.3977 38 1 3.5623 -10.3327 1.4276 39 1 4.2052 -12.2120 0.1009 40 1 8.5420 -9.1534 1.5987 41 1 7.6982 -8.8626 3.1582 42 1 9.6574 -10.0575 3.9046 43 1 9.6780 -11.0946 2.4464 44 1 6.1384 -11.3656 3.8993 45 1 6.7690 -12.6185 2.7972 46 1 3.9332 -5.6217 -2.1387 47 1 2.3271 -3.7568 -2.1333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364167030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:52 Heat of formation + Delta-G solvation = -129.805385 kcal Electronic energy + Delta-G solvation = -28153.274613 eV Core-core repulsion = 24106.618006 eV Total energy + Delta-G solvation = -4046.656607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 11.37 seconds Orbital eigenvalues (eV) -41.80571 -40.64927 -39.67670 -38.07386 -36.30873 -35.82119 -34.97457 -33.27484 -31.99549 -31.72871 -30.92657 -28.75879 -28.03934 -25.41075 -24.49498 -23.77599 -23.00525 -22.37268 -21.64697 -21.38922 -19.53868 -18.70291 -18.49185 -18.29416 -17.63438 -17.09131 -16.83440 -16.63023 -16.24637 -15.91850 -15.83161 -15.63229 -15.38790 -15.05143 -14.83086 -14.58169 -14.47708 -14.24806 -14.17551 -13.66052 -13.40825 -13.26253 -13.14040 -13.06195 -12.59615 -12.58294 -12.45962 -12.32657 -12.05270 -11.89120 -11.73944 -11.67432 -11.53566 -11.23906 -10.98666 -10.82400 -10.58631 -10.50746 -10.16534 -9.73550 -8.82360 -8.16741 -6.31679 0.51046 0.60451 1.40407 1.43517 1.51257 1.51793 2.06104 2.41242 2.89650 3.03189 3.10136 3.12055 3.33372 3.50544 3.55086 3.97085 4.07176 4.10723 4.19223 4.21074 4.26131 4.40100 4.41191 4.49074 4.54051 4.62072 4.68269 4.72036 4.76731 4.79038 4.88206 4.94171 4.96209 5.15080 5.22667 5.32170 5.34675 5.42831 5.45266 5.52430 5.65019 5.77380 5.95878 6.03192 6.11212 6.15018 6.28573 6.80836 6.83207 6.98760 7.36534 7.48551 8.90842 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023222 B = 0.002011 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.451995 B =13920.115763 C =14468.032483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.057 3.943 10 C -0.076 4.076 11 C -0.121 4.121 12 C -0.122 4.122 13 C 0.138 3.862 14 N -0.667 5.667 15 C 0.701 3.299 16 O -0.616 6.616 17 N -0.712 5.712 18 C 0.179 3.821 19 H 0.086 0.914 20 C 0.065 3.935 21 O -0.575 6.575 22 C -0.111 4.111 23 H 0.110 0.890 24 C -0.149 4.149 25 C 0.046 3.954 26 O -0.409 6.409 27 C 0.058 3.942 28 C -0.128 4.128 29 C -0.113 4.113 30 H 0.265 0.735 31 H 0.006 0.994 32 H -0.002 1.002 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.423 0.577 36 H 0.413 0.587 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.396 0.604 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.158 0.842 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.599 -26.860 -0.321 32.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.077 4.077 11 C -0.140 4.140 12 C -0.143 4.143 13 C 0.043 3.957 14 N -0.316 5.316 15 C 0.401 3.599 16 O -0.495 6.495 17 N -0.368 5.368 18 C 0.073 3.927 19 H 0.104 0.896 20 C -0.014 4.014 21 O -0.383 6.383 22 C -0.131 4.131 23 H 0.128 0.872 24 C -0.186 4.186 25 C -0.030 4.030 26 O -0.329 6.329 27 C -0.019 4.019 28 C -0.148 4.148 29 C -0.132 4.132 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.016 0.984 33 H 0.126 0.874 34 H 0.145 0.855 35 H 0.262 0.738 36 H 0.250 0.750 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.245 0.755 40 H 0.121 0.879 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.176 0.824 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 18.354 -26.479 0.721 32.226 hybrid contribution -0.369 0.922 -0.527 1.124 sum 17.985 -25.557 0.194 31.252 Atomic orbital electron populations 1.70082 1.07701 1.27974 1.51359 1.25962 0.95800 1.03194 0.94669 0.85478 0.78265 0.77998 0.79186 1.18950 1.20644 1.19476 1.21356 0.93114 0.91159 1.50835 0.92608 1.18082 0.92889 0.91241 0.95742 1.20399 0.97797 0.95734 0.93792 1.20921 0.98714 0.96778 0.97606 1.21132 0.99211 0.95691 0.98240 1.17332 0.94793 0.90051 0.93511 1.42215 1.34725 1.22970 1.31690 1.16080 0.81462 0.80196 0.82142 1.90931 1.41921 1.79622 1.37071 1.44802 1.40709 1.20700 1.30561 1.20879 0.94504 0.86285 0.91010 0.89561 1.22556 0.96384 0.94318 0.88172 1.86366 1.50794 1.57897 1.43204 1.22795 0.93384 0.95967 1.00912 0.87217 1.23379 0.95711 0.97827 1.01709 1.23568 0.93287 0.89319 0.96784 1.88394 1.25845 1.62847 1.55841 1.23176 0.85879 0.99393 0.93408 1.21000 0.98481 0.98188 0.97163 1.20958 0.98043 0.96747 0.97465 0.92609 0.97520 0.98382 0.87415 0.85483 0.73843 0.75005 0.90929 0.95025 0.75474 0.87941 0.91330 0.89185 0.90791 0.91179 0.89968 0.82425 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.53 -30.58 9.09 25.60 0.23 -30.35 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.06 3.16 5.10 29.10 0.15 3.31 16 10 C -0.08 -3.51 5.07 -19.84 -0.10 -3.61 16 11 C -0.12 -5.22 9.69 22.25 0.22 -5.01 16 12 C -0.12 -4.58 8.69 22.39 0.19 -4.38 16 13 C 0.14 4.25 6.30 38.15 0.24 4.49 16 14 N -0.67 -14.60 5.34 -317.18 -1.70 -16.29 16 15 C 0.70 16.77 8.37 179.05 1.50 18.27 16 16 O -0.62 -20.52 13.44 -3.97 -0.05 -20.58 16 17 N -0.71 -10.69 4.76 -457.81 -2.18 -12.87 16 18 C 0.18 2.58 1.75 44.99 0.08 2.65 16 19 H 0.09 1.61 7.55 -2.39 -0.02 1.60 16 20 C 0.06 0.88 6.59 71.98 0.47 1.35 16 21 O -0.57 -6.26 12.75 -148.98 -1.90 -8.16 16 22 C -0.11 -1.16 2.36 -9.53 -0.02 -1.18 16 23 H 0.11 1.01 7.61 -2.39 -0.02 1.00 16 24 C -0.15 -1.49 6.38 32.14 0.21 -1.28 16 25 C 0.05 0.52 7.78 72.74 0.57 1.08 16 26 O -0.41 -6.82 11.36 -148.98 -1.69 -8.51 16 27 C 0.06 0.72 6.59 72.45 0.48 1.19 16 28 C -0.13 -3.83 9.97 22.39 0.22 -3.61 16 29 C -0.11 -4.34 9.69 22.25 0.22 -4.12 16 30 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.01 0.38 8.08 -2.39 -0.02 0.36 16 32 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 16 33 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 34 H 0.13 4.82 6.22 -2.91 -0.02 4.80 16 35 H 0.42 5.61 8.84 -92.71 -0.82 4.79 16 36 H 0.41 3.80 8.62 -92.71 -0.80 3.00 16 37 H 0.07 0.73 7.47 -2.39 -0.02 0.71 16 38 H 0.03 0.60 8.14 -2.39 -0.02 0.59 16 39 H 0.40 1.59 9.12 -74.06 -0.68 0.91 16 40 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 0.90 8.04 -2.38 -0.02 0.88 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 44 H 0.07 0.86 7.64 -2.39 -0.02 0.84 16 45 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 47 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -77.43 388.91 -1.38 -78.80 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -1.28 Total: 18.19 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 5.11 Total: -20.62 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -3.59 Total: -85.87 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -3.65 Total: -37.25 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -77.43 -1.38 -78.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364167030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.001 kcal (2) G-P(sol) polarization free energy of solvation -77.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.37 seconds