Wall clock time and date at job start Tue Mar 31 2020 23:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99646 * 2 1 4 4 H 1.48494 * 109.46997 * 239.99947 * 3 2 1 5 5 H 1.48497 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46726 * 119.99869 * 3 2 1 7 7 C 1.37875 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99609 * 181.96309 * 7 2 1 9 9 C 1.50702 * 120.00196 * 1.96715 * 7 2 1 10 10 H 1.08998 * 109.47007 * 175.35482 * 9 7 2 11 11 C 1.50703 * 109.46999 * 55.35735 * 9 7 2 12 12 O 1.21282 * 119.99840 * 239.99942 * 11 9 7 13 13 N 1.34774 * 120.00035 * 60.00195 * 11 9 7 14 14 C 1.46496 * 119.99767 * 179.97438 * 13 11 9 15 15 C 1.53007 * 109.47230 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.50497 * 300.00587 * 15 14 13 17 17 O 1.42894 * 109.46933 * 179.97438 * 16 15 14 18 18 C 1.53096 * 109.50865 * 179.91458 * 15 14 13 19 19 O 1.43105 * 109.21081 * 296.87166 * 18 15 14 20 20 C 1.43011 * 113.76468 * 301.35855 * 19 18 15 21 21 C 1.53105 * 109.25765 * 58.66586 * 20 19 18 22 22 N 1.47012 * 109.50319 * 60.08611 * 15 14 13 23 23 C 1.50697 * 109.46844 * 295.35982 * 9 7 2 24 24 C 1.38239 * 120.00278 * 347.13305 * 23 9 7 25 25 C 1.38231 * 120.00271 * 179.72974 * 24 23 9 26 26 C 1.38238 * 119.99868 * 0.27746 * 25 24 23 27 27 C 1.38233 * 120.00044 * 359.96249 * 26 25 24 28 28 C 1.38233 * 119.99999 * 167.33528 * 23 9 7 29 29 H 0.96991 * 120.00280 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00172 * 359.97438 * 13 11 9 31 31 H 1.08999 * 109.47853 * 300.00411 * 14 13 11 32 32 H 1.09008 * 109.47014 * 60.00400 * 14 13 11 33 33 H 1.09000 * 109.46761 * 299.99580 * 16 15 14 34 34 H 1.08995 * 109.47295 * 59.99693 * 16 15 14 35 35 H 0.96697 * 114.00103 * 180.02562 * 17 16 15 36 36 H 1.09006 * 109.50705 * 56.85131 * 18 15 14 37 37 H 1.08998 * 109.50877 * 176.97719 * 18 15 14 38 38 H 1.09000 * 109.50568 * 298.73756 * 20 19 18 39 39 H 1.08991 * 109.50976 * 178.60227 * 20 19 18 40 40 H 1.08999 * 109.50452 * 183.21853 * 21 20 19 41 41 H 1.09000 * 109.50602 * 63.09093 * 21 20 19 42 42 H 1.00900 * 111.00481 * 297.54256 * 22 15 14 43 43 H 1.08008 * 119.99616 * 0.02562 * 24 23 9 44 44 H 1.07998 * 119.99937 * 180.26594 * 25 24 23 45 45 H 1.08000 * 119.99928 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.99884 * 180.02562 * 27 26 25 47 47 H 1.08002 * 120.00013 * 0.02562 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0841 -1.1942 0.0326 9 6 1.2518 -2.4988 -0.0437 10 1 1.9596 -3.3242 -0.1197 11 6 0.3364 -2.5103 -1.2407 12 8 -0.8608 -2.6302 -1.0875 13 7 0.8479 -2.3873 -2.4815 14 6 -0.0420 -2.3990 -3.6452 15 6 0.7863 -2.2439 -4.9223 16 6 1.5501 -0.9189 -4.8780 17 8 2.3237 -0.7750 -6.0707 18 6 -0.1427 -2.2582 -6.1390 19 8 -0.7976 -3.5282 -6.2166 20 6 0.1021 -4.6351 -6.3199 21 6 1.0336 -4.6438 -5.1048 22 7 1.7406 -3.3573 -5.0266 23 6 0.4359 -2.6508 1.2141 24 6 0.6618 -1.8128 2.2901 25 6 -0.0905 -1.9486 3.4418 26 6 -1.0647 -2.9262 3.5198 27 6 -1.2872 -3.7674 2.4457 28 6 -0.5356 -3.6310 1.2936 29 1 -0.4850 0.8399 -0.0004 30 1 1.8053 -2.2911 -2.6041 31 1 -0.5862 -3.3429 -3.6770 32 1 -0.7501 -1.5738 -3.5693 33 1 0.8419 -0.0937 -4.8022 34 1 2.2124 -0.9100 -4.0124 35 1 2.8356 0.0444 -6.1111 36 1 -0.8877 -1.4689 -6.0375 37 1 0.4411 -2.0939 -7.0447 38 1 0.6931 -4.5400 -7.2308 39 1 -0.4663 -5.5646 -6.3494 40 1 1.7580 -5.4517 -5.2074 41 1 0.4474 -4.7927 -4.1980 42 1 2.3919 -3.3488 -4.2560 43 1 1.4228 -1.0488 2.2290 44 1 0.0831 -1.2910 4.2808 45 1 -1.6522 -3.0325 4.4198 46 1 -2.0487 -4.5309 2.5065 47 1 -0.7096 -4.2882 0.4544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364472147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:45 Heat of formation + Delta-G solvation = -92.434992 kcal Electronic energy + Delta-G solvation = -30616.573731 eV Core-core repulsion = 26571.537625 eV Total energy + Delta-G solvation = -4045.036105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 6.32 seconds Orbital eigenvalues (eV) -40.23358 -38.84132 -37.42708 -36.73153 -35.07989 -33.66478 -33.07242 -31.50249 -30.85189 -29.69299 -27.73570 -27.10792 -25.84893 -25.30335 -23.73403 -22.41556 -21.29551 -20.62673 -19.32710 -19.01329 -17.51799 -16.86061 -16.68951 -16.20172 -15.86290 -15.49667 -15.32487 -15.16246 -14.92667 -14.50622 -14.18532 -13.94300 -13.86273 -13.66404 -13.50524 -13.09138 -12.89061 -12.59690 -12.38166 -12.18997 -12.08135 -11.89439 -11.61234 -11.41260 -11.30783 -11.02209 -10.96614 -10.84548 -10.49116 -10.42159 -10.08449 -10.07410 -9.71864 -9.55901 -9.43049 -8.77557 -8.43307 -8.34659 -8.08928 -7.71138 -7.42308 -6.19528 -4.36702 2.52598 2.59467 3.12691 3.21682 3.22892 3.81061 3.91952 4.05966 4.18655 4.25294 4.37739 4.80044 4.92709 4.99558 5.00989 5.07595 5.15213 5.27986 5.33838 5.55310 5.59039 5.71636 5.78055 5.84200 5.86803 5.89726 5.95725 6.03776 6.05261 6.17788 6.36469 6.52121 6.65430 6.76535 6.85595 6.89279 7.10838 7.13795 7.19206 7.25818 7.40966 7.53529 7.61221 7.63210 7.68325 7.75177 8.13467 8.24011 8.50526 8.72037 9.29877 9.62441 10.80552 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.004472 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.490345 B = 6259.420590 C = 7843.901883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.075 3.925 3 Si 0.886 3.114 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.057 3.943 10 H 0.055 0.945 11 C 0.551 3.449 12 O -0.543 6.543 13 N -0.739 5.739 14 C 0.105 3.895 15 C 0.075 3.925 16 C 0.089 3.911 17 O -0.560 6.560 18 C 0.082 3.918 19 O -0.383 6.383 20 C 0.064 3.936 21 C 0.014 3.986 22 N -0.662 5.662 23 C -0.014 4.014 24 C -0.065 4.065 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.144 4.144 28 C -0.101 4.101 29 H 0.266 0.734 30 H 0.391 0.609 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.374 0.626 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.345 0.655 43 H 0.128 0.872 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -4.582 -8.359 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.133 4.133 3 Si 0.713 3.287 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.580 4.580 8 H 0.084 0.916 9 C 0.036 3.964 10 H 0.073 0.927 11 C 0.340 3.660 12 O -0.419 6.419 13 N -0.393 5.393 14 C -0.022 4.022 15 C -0.018 4.018 16 C 0.011 3.989 17 O -0.365 6.365 18 C 0.004 3.996 19 O -0.302 6.302 20 C -0.013 4.013 21 C -0.115 4.115 22 N -0.294 5.294 23 C -0.015 4.015 24 C -0.083 4.083 25 C -0.166 4.166 26 C -0.162 4.162 27 C -0.162 4.162 28 C -0.119 4.119 29 H 0.076 0.924 30 H 0.225 0.775 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.221 0.779 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.164 0.836 43 H 0.145 0.855 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.190 -5.095 -9.049 10.614 hybrid contribution 0.901 1.808 1.106 2.303 sum 3.091 -3.286 -7.943 9.135 Atomic orbital electron populations 1.70063 1.05393 1.27099 1.44678 1.25054 0.94799 0.99110 0.94385 0.86747 0.79689 0.83345 0.78899 1.20178 1.21272 1.19909 1.20649 0.92843 0.88738 1.55759 0.91590 1.17869 0.92692 0.98094 0.87735 0.92710 1.21026 0.89184 0.72220 0.83524 1.90554 1.16671 1.49133 1.85533 1.45858 1.09605 1.78304 1.05565 1.21631 0.93428 1.02643 0.84478 1.21853 0.92729 0.91592 0.95590 1.22090 0.94081 0.95198 0.87573 1.86512 1.64188 1.45085 1.40685 1.22562 0.94945 0.85691 0.96353 1.88003 1.33052 1.14665 1.94451 1.22632 0.91841 0.89806 0.96995 1.22653 0.97622 0.92431 0.98808 1.60793 1.17171 1.01357 1.50117 1.19795 0.94607 0.92250 0.94872 1.21140 0.98483 0.97243 0.91430 1.20991 0.98160 0.99040 0.98396 1.20774 0.99567 0.97773 0.98136 1.20821 1.00532 1.00359 0.94493 1.20961 0.96016 0.98853 0.96044 0.92409 0.77505 0.91204 0.91814 0.92806 0.92420 0.77943 0.88715 0.91121 0.92520 0.88817 0.89803 0.93377 0.83582 0.85466 0.88044 0.88198 0.88108 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.25 10.89 55.43 0.60 -21.65 16 2 C 0.07 1.81 3.99 -17.82 -0.07 1.74 16 3 Si 0.89 19.07 29.54 -169.99 -5.02 14.05 16 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.54 -12.67 7.12 -34.44 -0.25 -12.92 16 8 H 0.07 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.06 1.30 2.78 -94.07 -0.26 1.04 16 10 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 11 C 0.55 12.54 5.45 -10.99 -0.06 12.48 16 12 O -0.54 -14.23 13.96 5.56 0.08 -14.15 16 13 N -0.74 -13.70 4.94 -60.29 -0.30 -14.00 16 14 C 0.10 1.79 4.14 -4.04 -0.02 1.77 16 15 C 0.07 1.04 0.46 -131.49 -0.06 0.97 16 16 C 0.09 1.19 5.92 37.16 0.22 1.41 16 17 O -0.56 -6.77 12.80 -35.23 -0.45 -7.22 16 18 C 0.08 1.11 5.60 37.21 0.21 1.32 16 19 O -0.38 -5.48 10.28 -35.23 -0.36 -5.85 16 20 C 0.06 0.75 7.01 37.21 0.26 1.02 16 21 C 0.01 0.17 6.37 -3.71 -0.02 0.15 16 22 N -0.66 -8.57 6.21 -99.69 -0.62 -9.19 16 23 C -0.01 -0.34 4.51 -104.62 -0.47 -0.81 16 24 C -0.07 -1.50 8.20 -39.58 -0.32 -1.83 16 25 C -0.15 -3.07 10.05 -39.58 -0.40 -3.47 16 26 C -0.14 -2.85 10.05 -39.58 -0.40 -3.25 16 27 C -0.14 -2.95 10.05 -39.58 -0.40 -3.35 16 28 C -0.10 -2.27 8.21 -39.58 -0.33 -2.59 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 6.60 6.18 -40.82 -0.25 6.35 16 31 H 0.07 1.29 6.07 -51.93 -0.32 0.97 16 32 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.81 6.86 -51.93 -0.36 0.46 16 35 H 0.37 3.03 9.12 45.56 0.42 3.44 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 0.95 7.59 -51.93 -0.39 0.56 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.66 6.39 -51.93 -0.33 0.33 16 42 H 0.34 4.40 7.55 -39.29 -0.30 4.10 16 43 H 0.13 3.03 6.02 -52.48 -0.32 2.71 16 44 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 45 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 46 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 47 H 0.11 2.37 7.03 -52.49 -0.37 2.00 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -30.27 369.94 -8.85 -39.11 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -5.99 Total: 19.63 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.36 Total: -6.31 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.31 Total: -44.84 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.74 Total: -27.22 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.27 -8.85 -39.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364472147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.322 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.32 seconds