Wall clock time and date at job start Tue Mar 31 2020 23:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99646 * 2 1 4 4 H 1.48494 * 109.46997 * 239.99947 * 3 2 1 5 5 H 1.48497 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46726 * 119.99869 * 3 2 1 7 7 C 1.37875 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99609 * 181.96309 * 7 2 1 9 9 C 1.50702 * 120.00196 * 1.96715 * 7 2 1 10 10 H 1.08998 * 109.47007 * 175.35482 * 9 7 2 11 11 C 1.50703 * 109.46999 * 55.35735 * 9 7 2 12 12 O 1.21282 * 119.99840 * 239.99942 * 11 9 7 13 13 N 1.34774 * 120.00035 * 60.00195 * 11 9 7 14 14 C 1.46496 * 119.99767 * 179.97438 * 13 11 9 15 15 C 1.53007 * 109.47230 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.50497 * 300.00587 * 15 14 13 17 17 O 1.42894 * 109.46933 * 179.97438 * 16 15 14 18 18 C 1.53096 * 109.50865 * 179.91458 * 15 14 13 19 19 O 1.43105 * 109.21081 * 296.87166 * 18 15 14 20 20 C 1.43011 * 113.76468 * 301.35855 * 19 18 15 21 21 C 1.53105 * 109.25765 * 58.66586 * 20 19 18 22 22 N 1.47012 * 109.50319 * 60.08611 * 15 14 13 23 23 C 1.50697 * 109.46844 * 295.35982 * 9 7 2 24 24 C 1.38239 * 120.00278 * 347.13305 * 23 9 7 25 25 C 1.38231 * 120.00271 * 179.72974 * 24 23 9 26 26 C 1.38238 * 119.99868 * 0.27746 * 25 24 23 27 27 C 1.38233 * 120.00044 * 359.96249 * 26 25 24 28 28 C 1.38233 * 119.99999 * 167.33528 * 23 9 7 29 29 H 0.96991 * 120.00280 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00172 * 359.97438 * 13 11 9 31 31 H 1.08999 * 109.47853 * 300.00411 * 14 13 11 32 32 H 1.09008 * 109.47014 * 60.00400 * 14 13 11 33 33 H 1.09000 * 109.46761 * 299.99580 * 16 15 14 34 34 H 1.08995 * 109.47295 * 59.99693 * 16 15 14 35 35 H 0.96697 * 114.00103 * 180.02562 * 17 16 15 36 36 H 1.09006 * 109.50705 * 56.85131 * 18 15 14 37 37 H 1.08998 * 109.50877 * 176.97719 * 18 15 14 38 38 H 1.09000 * 109.50568 * 298.73756 * 20 19 18 39 39 H 1.08991 * 109.50976 * 178.60227 * 20 19 18 40 40 H 1.08999 * 109.50452 * 183.21853 * 21 20 19 41 41 H 1.09000 * 109.50602 * 63.09093 * 21 20 19 42 42 H 1.00900 * 111.00481 * 297.54256 * 22 15 14 43 43 H 1.08008 * 119.99616 * 0.02562 * 24 23 9 44 44 H 1.07998 * 119.99937 * 180.26594 * 25 24 23 45 45 H 1.08000 * 119.99928 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.99884 * 180.02562 * 27 26 25 47 47 H 1.08002 * 120.00013 * 0.02562 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0841 -1.1942 0.0326 9 6 1.2518 -2.4988 -0.0437 10 1 1.9596 -3.3242 -0.1197 11 6 0.3364 -2.5103 -1.2407 12 8 -0.8608 -2.6302 -1.0875 13 7 0.8479 -2.3873 -2.4815 14 6 -0.0420 -2.3990 -3.6452 15 6 0.7863 -2.2439 -4.9223 16 6 1.5501 -0.9189 -4.8780 17 8 2.3237 -0.7750 -6.0707 18 6 -0.1427 -2.2582 -6.1390 19 8 -0.7976 -3.5282 -6.2166 20 6 0.1021 -4.6351 -6.3199 21 6 1.0336 -4.6438 -5.1048 22 7 1.7406 -3.3573 -5.0266 23 6 0.4359 -2.6508 1.2141 24 6 0.6618 -1.8128 2.2901 25 6 -0.0905 -1.9486 3.4418 26 6 -1.0647 -2.9262 3.5198 27 6 -1.2872 -3.7674 2.4457 28 6 -0.5356 -3.6310 1.2936 29 1 -0.4850 0.8399 -0.0004 30 1 1.8053 -2.2911 -2.6041 31 1 -0.5862 -3.3429 -3.6770 32 1 -0.7501 -1.5738 -3.5693 33 1 0.8419 -0.0937 -4.8022 34 1 2.2124 -0.9100 -4.0124 35 1 2.8356 0.0444 -6.1111 36 1 -0.8877 -1.4689 -6.0375 37 1 0.4411 -2.0939 -7.0447 38 1 0.6931 -4.5400 -7.2308 39 1 -0.4663 -5.5646 -6.3494 40 1 1.7580 -5.4517 -5.2074 41 1 0.4474 -4.7927 -4.1980 42 1 2.3919 -3.3488 -4.2560 43 1 1.4228 -1.0488 2.2290 44 1 0.0831 -1.2910 4.2808 45 1 -1.6522 -3.0325 4.4198 46 1 -2.0487 -4.5309 2.5065 47 1 -0.7096 -4.2882 0.4544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364472147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:39 Heat of formation + Delta-G solvation = -116.129186 kcal Electronic energy + Delta-G solvation = -30617.601188 eV Core-core repulsion = 26571.537625 eV Total energy + Delta-G solvation = -4046.063562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 10.72 seconds Orbital eigenvalues (eV) -41.46049 -40.47134 -39.04371 -37.80533 -36.29540 -35.49508 -34.40427 -32.80439 -32.55258 -31.36453 -29.32523 -28.28395 -26.95816 -26.77426 -25.45978 -23.43893 -22.97540 -22.27041 -21.03800 -20.19047 -18.88063 -18.31777 -17.80108 -17.43604 -17.30728 -17.01355 -16.69691 -16.67316 -16.49393 -15.87662 -15.60268 -15.34930 -15.26859 -15.07721 -14.83864 -14.39103 -14.20038 -14.07295 -13.95799 -13.86983 -13.66761 -13.24284 -13.03936 -12.89486 -12.71782 -12.58353 -12.49675 -12.27918 -12.00773 -11.79746 -11.47856 -11.42816 -11.20408 -11.08305 -10.65185 -10.61037 -10.20081 -9.75738 -9.50599 -9.39461 -9.11206 -8.07158 -6.28001 0.86267 0.91802 1.41669 1.46152 1.51212 2.28931 2.42339 2.59086 2.83330 3.04210 3.17996 3.19866 3.34083 3.68636 3.74520 4.02016 4.11990 4.27830 4.31904 4.34269 4.35932 4.46699 4.48498 4.52351 4.54153 4.63893 4.65524 4.69368 4.73446 4.84645 4.94928 4.99170 5.00223 5.07579 5.14894 5.44065 5.53135 5.69012 5.74848 5.85620 5.88573 5.93874 5.96992 6.13184 6.21796 6.41069 6.51803 6.73247 6.90073 6.99601 7.41296 7.87816 8.91276 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.004472 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.490345 B = 6259.420590 C = 7843.901883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.042 3.958 3 Si 0.939 3.061 4 H -0.262 1.262 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.073 0.927 9 C 0.048 3.952 10 H 0.067 0.933 11 C 0.551 3.449 12 O -0.583 6.583 13 N -0.723 5.723 14 C 0.115 3.885 15 C 0.084 3.916 16 C 0.096 3.904 17 O -0.564 6.564 18 C 0.084 3.916 19 O -0.403 6.403 20 C 0.061 3.939 21 C 0.015 3.985 22 N -0.657 5.657 23 C -0.035 4.035 24 C -0.086 4.086 25 C -0.152 4.152 26 C -0.141 4.141 27 C -0.147 4.147 28 C -0.119 4.119 29 H 0.255 0.745 30 H 0.400 0.600 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.393 0.607 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.027 0.973 42 H 0.346 0.654 43 H 0.113 0.887 44 H 0.126 0.874 45 H 0.138 0.862 46 H 0.128 0.872 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.717 -4.833 -8.553 10.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.187 1.187 5 H -0.226 1.226 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.091 0.909 9 C 0.027 3.973 10 H 0.085 0.915 11 C 0.340 3.660 12 O -0.462 6.462 13 N -0.377 5.377 14 C -0.011 4.011 15 C -0.009 4.009 16 C 0.017 3.983 17 O -0.371 6.371 18 C 0.007 3.993 19 O -0.321 6.321 20 C -0.016 4.016 21 C -0.115 4.115 22 N -0.289 5.289 23 C -0.036 4.036 24 C -0.104 4.104 25 C -0.170 4.170 26 C -0.159 4.159 27 C -0.165 4.165 28 C -0.137 4.137 29 H 0.064 0.936 30 H 0.236 0.764 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.243 0.757 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.045 0.955 42 H 0.165 0.835 43 H 0.131 0.869 44 H 0.144 0.856 45 H 0.155 0.845 46 H 0.146 0.854 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.299 -5.347 -9.276 11.204 hybrid contribution 0.601 1.810 1.176 2.240 sum 3.899 -3.537 -8.100 9.661 Atomic orbital electron populations 1.70240 1.06888 1.26788 1.46804 1.25569 0.95038 1.01610 0.94082 0.85903 0.78434 0.79780 0.79390 1.18678 1.22617 1.19612 1.20848 0.93100 0.88970 1.54334 0.90876 1.17990 0.92996 0.98364 0.87944 0.91500 1.21053 0.88578 0.71754 0.84587 1.90522 1.18230 1.51180 1.86260 1.45661 1.10257 1.76791 1.04992 1.21562 0.93289 1.00774 0.85507 1.21733 0.92716 0.92596 0.93842 1.21900 0.93934 0.94593 0.87860 1.86464 1.64289 1.46641 1.39720 1.22564 0.94915 0.85808 0.96053 1.87984 1.34273 1.15372 1.94509 1.22835 0.91905 0.89787 0.97069 1.22726 0.98019 0.92613 0.98096 1.60853 1.16739 1.01486 1.49870 1.19934 0.95446 0.93015 0.95221 1.21127 0.99299 0.97398 0.92589 1.21322 0.97760 0.99574 0.98338 1.21174 0.99072 0.96543 0.99131 1.21187 1.00430 1.00977 0.93893 1.21021 0.96785 0.99078 0.96833 0.93554 0.76368 0.92559 0.94458 0.93093 0.93204 0.75733 0.88539 0.90538 0.91489 0.86934 0.87393 0.95504 0.83485 0.86931 0.85569 0.84458 0.85401 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.22 10.89 21.45 0.23 -46.99 16 2 C 0.04 2.03 3.99 84.65 0.34 2.37 16 3 Si 0.94 38.98 29.54 68.60 2.03 41.01 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.30 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.53 -24.99 7.12 25.60 0.18 -24.81 16 8 H 0.07 3.25 7.81 -2.91 -0.02 3.23 16 9 C 0.05 2.23 2.78 -13.03 -0.04 2.19 16 10 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 11 C 0.55 25.68 5.45 87.66 0.48 26.16 16 12 O -0.58 -31.64 13.96 -3.04 -0.04 -31.69 16 13 N -0.72 -27.31 4.94 -463.05 -2.29 -29.59 16 14 C 0.12 4.04 4.14 86.38 0.36 4.40 16 15 C 0.08 2.29 0.46 3.54 0.00 2.29 16 16 C 0.10 2.47 5.92 71.98 0.43 2.89 16 17 O -0.56 -12.52 12.80 -148.98 -1.91 -14.42 16 18 C 0.08 2.22 5.60 72.01 0.40 2.62 16 19 O -0.40 -11.25 10.28 -148.98 -1.53 -12.78 16 20 C 0.06 1.33 7.01 72.02 0.50 1.83 16 21 C 0.01 0.34 6.37 86.32 0.55 0.89 16 22 N -0.66 -16.21 6.21 -469.32 -2.91 -19.13 16 23 C -0.04 -1.68 4.51 -19.87 -0.09 -1.77 16 24 C -0.09 -3.99 8.20 22.27 0.18 -3.81 16 25 C -0.15 -6.13 10.05 22.27 0.22 -5.90 16 26 C -0.14 -5.27 10.05 22.27 0.22 -5.05 16 27 C -0.15 -5.84 10.05 22.27 0.22 -5.62 16 28 C -0.12 -5.42 8.21 22.27 0.18 -5.24 16 29 H 0.26 13.87 8.31 -92.71 -0.77 13.09 16 30 H 0.40 13.48 6.18 -92.71 -0.57 12.91 16 31 H 0.06 2.15 6.07 -2.39 -0.01 2.13 16 32 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.05 1.35 6.86 -2.39 -0.02 1.34 16 35 H 0.39 5.46 9.12 -74.06 -0.68 4.78 16 36 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.08 1.95 7.59 -2.39 -0.02 1.93 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.03 0.74 6.39 -2.39 -0.02 0.72 16 42 H 0.35 8.39 7.55 -89.69 -0.68 7.71 16 43 H 0.11 5.44 6.02 -2.91 -0.02 5.42 16 44 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 45 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 46 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 47 H 0.10 4.47 7.03 -2.91 -0.02 4.45 16 Total: -1.00 -65.51 369.94 -3.17 -68.68 By element: Atomic # 1 Polarization: 52.36 SS G_CDS: -0.91 Total: 51.45 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 4.15 Total: -6.54 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -4.97 Total: -95.71 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -3.48 Total: -58.89 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -65.51 -3.17 -68.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364472147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.450 kcal (2) G-P(sol) polarization free energy of solvation -65.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.72 seconds