Wall clock time and date at job start Tue Mar 31 2020 23:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99971 * 2 1 4 4 H 1.48497 * 109.46754 * 239.99804 * 3 2 1 5 5 H 1.48491 * 109.47079 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47293 * 120.00074 * 3 2 1 7 7 C 1.37877 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99582 * 175.01926 * 7 2 1 9 9 C 1.50698 * 119.99989 * 355.01448 * 7 2 1 10 10 H 1.08995 * 109.47330 * 26.04117 * 9 7 2 11 11 C 1.50701 * 109.46773 * 146.03500 * 9 7 2 12 12 O 1.21287 * 120.00056 * 119.99996 * 11 9 7 13 13 N 1.34780 * 120.00002 * 300.00160 * 11 9 7 14 14 C 1.46500 * 119.99965 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.47265 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.50761 * 299.91458 * 15 14 13 17 17 O 1.42908 * 109.46592 * 304.90531 * 16 15 14 18 18 C 1.53102 * 109.54615 * 179.80042 * 15 14 13 19 19 O 1.43014 * 109.25757 * 183.19339 * 18 15 14 20 20 C 1.43018 * 113.73935 * 58.67706 * 19 18 15 21 21 C 1.53101 * 109.25252 * 301.32305 * 20 19 18 22 22 N 1.47009 * 109.25872 * 56.85246 * 21 20 19 23 23 C 1.50700 * 109.47351 * 266.03389 * 9 7 2 24 24 C 1.38238 * 119.99819 * 306.09405 * 23 9 7 25 25 C 1.38234 * 119.99784 * 179.74574 * 24 23 9 26 26 C 1.38237 * 119.99698 * 0.52673 * 25 24 23 27 27 C 1.38237 * 120.00381 * 359.74780 * 26 25 24 28 28 C 1.38233 * 119.99857 * 359.97438 * 27 26 25 29 29 H 0.97004 * 119.99895 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99930 * 0.02562 * 13 11 9 31 31 H 1.08996 * 109.47279 * 59.99780 * 14 13 11 32 32 H 1.09001 * 109.47170 * 299.99765 * 14 13 11 33 33 H 1.08993 * 109.47477 * 64.90078 * 16 15 14 34 34 H 1.08997 * 109.47589 * 184.90835 * 16 15 14 35 35 H 0.96703 * 113.99655 * 180.02562 * 17 16 15 36 36 H 1.09005 * 109.50121 * 63.25843 * 18 15 14 37 37 H 1.09001 * 109.50463 * 303.13159 * 18 15 14 38 38 H 1.09002 * 109.50846 * 61.25571 * 20 19 18 39 39 H 1.09001 * 109.50478 * 181.39257 * 20 19 18 40 40 H 1.09007 * 109.50606 * 176.78411 * 21 20 19 41 41 H 1.08996 * 109.50646 * 296.91531 * 21 20 19 42 42 H 1.00898 * 111.00244 * 177.60067 * 22 21 20 43 43 H 1.08002 * 120.00110 * 359.97438 * 24 23 9 44 44 H 1.07997 * 120.00262 * 180.29113 * 25 24 23 45 45 H 1.07999 * 120.00121 * 179.77010 * 26 25 24 46 46 H 1.07995 * 120.00029 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.00486 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1959 -0.0807 9 6 1.2552 -2.4966 0.1145 10 1 0.2425 -2.3679 -0.2675 11 6 1.9643 -3.5560 -0.6892 12 8 2.3814 -4.5547 -0.1419 13 7 2.1350 -3.3935 -2.0162 14 6 2.8239 -4.4236 -2.7977 15 6 2.8825 -3.9962 -4.2655 16 6 1.4612 -3.8171 -4.8027 17 8 0.7169 -5.0185 -4.5905 18 6 3.6066 -5.0694 -5.0830 19 8 3.7237 -4.6303 -6.4390 20 6 4.4309 -3.3959 -6.5855 21 6 3.7152 -2.3058 -5.7833 22 7 3.6135 -2.7256 -4.3781 23 6 1.1970 -2.9179 1.5603 24 6 2.3618 -3.0206 2.2976 25 6 2.3080 -3.4020 3.6253 26 6 1.0903 -3.6910 4.2125 27 6 -0.0739 -3.5937 3.4735 28 6 -0.0206 -3.2068 2.1475 29 1 -0.4850 0.8401 -0.0004 30 1 1.8018 -2.5946 -2.4539 31 1 2.2816 -5.3655 -2.7153 32 1 3.8366 -4.5528 -2.4158 33 1 0.9765 -2.9924 -4.2802 34 1 1.5009 -3.5980 -5.8697 35 1 -0.1956 -4.9770 -4.9078 36 1 3.0374 -5.9984 -5.0490 37 1 4.6003 -5.2351 -4.6668 38 1 5.4486 -3.5130 -6.2130 39 1 4.4580 -3.1147 -7.6382 40 1 4.2820 -1.3767 -5.8455 41 1 2.7159 -2.1513 -6.1903 42 1 3.1799 -2.0080 -3.8168 43 1 3.3135 -2.7995 1.8375 44 1 3.2175 -3.4777 4.2027 45 1 1.0486 -3.9925 5.2487 46 1 -1.0251 -3.8192 3.9325 47 1 -0.9302 -3.1304 1.5702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364472149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:04 Heat of formation + Delta-G solvation = -101.382561 kcal Electronic energy + Delta-G solvation = -29986.844915 eV Core-core repulsion = 25941.420814 eV Total energy + Delta-G solvation = -4045.424101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.36107 -38.98806 -37.71021 -36.76184 -35.21644 -33.65351 -33.47781 -31.51855 -31.05090 -29.92893 -27.79988 -27.10976 -26.12064 -25.46776 -23.78491 -22.47293 -21.58667 -20.78204 -19.35717 -19.19840 -17.67688 -17.09064 -16.68765 -16.30492 -16.07281 -15.81907 -15.25244 -15.14239 -15.03054 -14.50500 -14.34825 -14.27787 -14.09052 -13.97940 -13.67864 -13.49696 -12.71155 -12.55926 -12.47074 -12.37016 -12.19701 -12.02351 -11.65667 -11.47549 -11.30088 -11.07493 -11.06071 -11.02346 -10.71728 -10.42321 -10.27674 -10.09921 -9.99711 -9.78645 -9.45897 -8.79986 -8.63832 -8.58525 -8.28052 -7.93778 -7.60682 -6.30661 -4.36028 2.38309 2.41297 3.17247 3.23673 3.26755 3.60717 3.74867 3.85091 4.06345 4.23458 4.26173 4.66153 4.76399 4.82623 4.84714 5.00387 5.02881 5.07352 5.13914 5.38524 5.48202 5.53495 5.60516 5.70404 5.72934 5.79814 5.84177 5.90302 6.01530 6.09657 6.22617 6.39292 6.50925 6.60586 6.73302 6.87421 6.97678 6.98988 7.09373 7.17367 7.24836 7.37706 7.45482 7.56463 7.60562 7.75272 7.96061 8.07262 8.36309 8.68885 9.25657 9.31223 10.77750 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.003964 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.999006 B = 7062.331048 C = 8389.526245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.074 3.926 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.049 3.951 10 H 0.090 0.910 11 C 0.530 3.470 12 O -0.566 6.566 13 N -0.725 5.725 14 C 0.142 3.858 15 C 0.073 3.927 16 C 0.055 3.945 17 O -0.561 6.561 18 C 0.082 3.918 19 O -0.382 6.382 20 C 0.060 3.940 21 C 0.014 3.986 22 N -0.668 5.668 23 C -0.011 4.011 24 C -0.084 4.084 25 C -0.134 4.134 26 C -0.149 4.149 27 C -0.132 4.132 28 C -0.120 4.120 29 H 0.267 0.733 30 H 0.398 0.602 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.378 0.622 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.042 0.958 42 H 0.355 0.645 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 -4.261 -10.343 11.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.130 4.130 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.028 3.972 10 H 0.107 0.893 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.378 5.378 14 C 0.017 3.983 15 C -0.020 4.020 16 C -0.025 4.025 17 O -0.365 6.365 18 C 0.004 3.996 19 O -0.300 6.300 20 C -0.017 4.017 21 C -0.115 4.115 22 N -0.303 5.303 23 C -0.012 4.012 24 C -0.102 4.102 25 C -0.153 4.153 26 C -0.167 4.167 27 C -0.150 4.150 28 C -0.138 4.138 29 H 0.077 0.923 30 H 0.232 0.768 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.225 0.775 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.060 0.940 42 H 0.176 0.824 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.958 -5.444 -9.843 11.924 hybrid contribution -1.108 2.291 -0.308 2.563 sum 2.850 -3.153 -10.151 11.005 Atomic orbital electron populations 1.69878 1.06004 1.27503 1.48275 1.24959 0.94876 0.99396 0.93794 0.86567 0.79607 0.82386 0.79039 1.19987 1.21194 1.19880 1.20665 0.93269 0.88549 1.52629 0.91917 1.18117 0.99467 0.91848 0.87731 0.89251 1.21555 0.78096 0.87075 0.81351 1.90587 1.51631 1.31526 1.70736 1.45794 1.60552 1.22749 1.08737 1.21040 0.98014 0.92408 0.86840 1.21817 0.90934 0.92360 0.96853 1.22815 0.92706 0.87658 0.99344 1.86456 1.28055 1.36449 1.85506 1.22564 0.99884 0.96020 0.81127 1.87993 1.76832 1.39038 1.26131 1.22682 0.95385 0.83680 0.99934 1.22685 1.00331 0.99325 0.89177 1.60856 1.54796 1.05475 1.09125 1.20039 0.92072 0.91877 0.97180 1.20830 0.98439 0.97823 0.93122 1.20961 0.96952 1.01797 0.95555 1.20798 0.93094 1.03895 0.98901 1.20898 0.97330 1.02004 0.94801 1.20993 0.97705 1.00249 0.94889 0.92313 0.76756 0.90657 0.91453 0.93466 0.93063 0.77484 0.87566 0.92008 0.92199 0.88682 0.89322 0.93955 0.82384 0.87085 0.87584 0.87715 0.87570 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.73 12.78 55.43 0.71 -22.02 16 2 C 0.07 1.84 5.45 -17.82 -0.10 1.75 16 3 Si 0.90 19.58 29.54 -169.99 -5.02 14.56 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.51 -12.55 7.46 -34.44 -0.26 -12.81 16 8 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 9 C 0.05 1.16 2.43 -94.08 -0.23 0.93 16 10 H 0.09 2.23 7.02 -51.93 -0.36 1.87 16 11 C 0.53 11.75 7.04 -10.98 -0.08 11.67 16 12 O -0.57 -13.91 15.42 5.55 0.09 -13.83 16 13 N -0.73 -13.18 4.92 -60.29 -0.30 -13.48 16 14 C 0.14 2.27 4.59 -4.04 -0.02 2.25 16 15 C 0.07 0.94 0.52 -131.49 -0.07 0.87 16 16 C 0.05 0.67 5.26 37.16 0.20 0.87 16 17 O -0.56 -6.94 12.27 -35.23 -0.43 -7.38 16 18 C 0.08 1.00 5.63 37.21 0.21 1.21 16 19 O -0.38 -4.65 10.20 -35.23 -0.36 -5.01 16 20 C 0.06 0.59 7.01 37.21 0.26 0.85 16 21 C 0.01 0.14 6.37 -3.71 -0.02 0.12 16 22 N -0.67 -8.32 6.35 -99.70 -0.63 -8.96 16 23 C -0.01 -0.25 4.30 -104.62 -0.45 -0.70 16 24 C -0.08 -1.90 8.31 -39.58 -0.33 -2.23 16 25 C -0.13 -2.69 10.05 -39.58 -0.40 -3.08 16 26 C -0.15 -2.80 10.05 -39.58 -0.40 -3.19 16 27 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 28 C -0.12 -2.64 9.67 -39.58 -0.38 -3.03 16 29 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.40 6.88 6.20 -40.82 -0.25 6.63 16 31 H 0.08 1.29 7.56 -51.93 -0.39 0.90 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.60 7.01 -51.93 -0.36 0.23 16 34 H 0.05 0.60 6.20 -51.93 -0.32 0.27 16 35 H 0.38 3.18 9.12 45.56 0.42 3.60 16 36 H 0.11 1.30 7.75 -51.93 -0.40 0.89 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 41 H 0.04 0.42 6.50 -51.93 -0.34 0.08 16 42 H 0.36 4.70 7.47 -39.29 -0.29 4.41 16 43 H 0.11 2.55 7.89 -52.49 -0.41 2.13 16 44 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 46 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 47 H 0.11 2.36 7.96 -52.49 -0.42 1.94 16 LS Contribution 378.68 15.07 5.71 5.71 Total: -1.00 -29.90 378.68 -8.78 -38.68 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -6.07 Total: 19.22 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -2.46 Total: -7.50 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.22 Total: -44.45 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.71 Total: -26.22 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.90 -8.78 -38.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364472149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.705 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds