Wall clock time and date at job start Tue Mar 31 2020 23:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99971 * 2 1 4 4 H 1.48497 * 109.46754 * 239.99804 * 3 2 1 5 5 H 1.48491 * 109.47079 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47293 * 120.00074 * 3 2 1 7 7 C 1.37877 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99582 * 175.01926 * 7 2 1 9 9 C 1.50698 * 119.99989 * 355.01448 * 7 2 1 10 10 H 1.08995 * 109.47330 * 26.04117 * 9 7 2 11 11 C 1.50701 * 109.46773 * 146.03500 * 9 7 2 12 12 O 1.21287 * 120.00056 * 119.99996 * 11 9 7 13 13 N 1.34780 * 120.00002 * 300.00160 * 11 9 7 14 14 C 1.46500 * 119.99965 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.47265 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.50761 * 299.91458 * 15 14 13 17 17 O 1.42908 * 109.46592 * 304.90531 * 16 15 14 18 18 C 1.53102 * 109.54615 * 179.80042 * 15 14 13 19 19 O 1.43014 * 109.25757 * 183.19339 * 18 15 14 20 20 C 1.43018 * 113.73935 * 58.67706 * 19 18 15 21 21 C 1.53101 * 109.25252 * 301.32305 * 20 19 18 22 22 N 1.47009 * 109.25872 * 56.85246 * 21 20 19 23 23 C 1.50700 * 109.47351 * 266.03389 * 9 7 2 24 24 C 1.38238 * 119.99819 * 306.09405 * 23 9 7 25 25 C 1.38234 * 119.99784 * 179.74574 * 24 23 9 26 26 C 1.38237 * 119.99698 * 0.52673 * 25 24 23 27 27 C 1.38237 * 120.00381 * 359.74780 * 26 25 24 28 28 C 1.38233 * 119.99857 * 359.97438 * 27 26 25 29 29 H 0.97004 * 119.99895 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99930 * 0.02562 * 13 11 9 31 31 H 1.08996 * 109.47279 * 59.99780 * 14 13 11 32 32 H 1.09001 * 109.47170 * 299.99765 * 14 13 11 33 33 H 1.08993 * 109.47477 * 64.90078 * 16 15 14 34 34 H 1.08997 * 109.47589 * 184.90835 * 16 15 14 35 35 H 0.96703 * 113.99655 * 180.02562 * 17 16 15 36 36 H 1.09005 * 109.50121 * 63.25843 * 18 15 14 37 37 H 1.09001 * 109.50463 * 303.13159 * 18 15 14 38 38 H 1.09002 * 109.50846 * 61.25571 * 20 19 18 39 39 H 1.09001 * 109.50478 * 181.39257 * 20 19 18 40 40 H 1.09007 * 109.50606 * 176.78411 * 21 20 19 41 41 H 1.08996 * 109.50646 * 296.91531 * 21 20 19 42 42 H 1.00898 * 111.00244 * 177.60067 * 22 21 20 43 43 H 1.08002 * 120.00110 * 359.97438 * 24 23 9 44 44 H 1.07997 * 120.00262 * 180.29113 * 25 24 23 45 45 H 1.07999 * 120.00121 * 179.77010 * 26 25 24 46 46 H 1.07995 * 120.00029 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.00486 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1959 -0.0807 9 6 1.2552 -2.4966 0.1145 10 1 0.2425 -2.3679 -0.2675 11 6 1.9643 -3.5560 -0.6892 12 8 2.3814 -4.5547 -0.1419 13 7 2.1350 -3.3935 -2.0162 14 6 2.8239 -4.4236 -2.7977 15 6 2.8825 -3.9962 -4.2655 16 6 1.4612 -3.8171 -4.8027 17 8 0.7169 -5.0185 -4.5905 18 6 3.6066 -5.0694 -5.0830 19 8 3.7237 -4.6303 -6.4390 20 6 4.4309 -3.3959 -6.5855 21 6 3.7152 -2.3058 -5.7833 22 7 3.6135 -2.7256 -4.3781 23 6 1.1970 -2.9179 1.5603 24 6 2.3618 -3.0206 2.2976 25 6 2.3080 -3.4020 3.6253 26 6 1.0903 -3.6910 4.2125 27 6 -0.0739 -3.5937 3.4735 28 6 -0.0206 -3.2068 2.1475 29 1 -0.4850 0.8401 -0.0004 30 1 1.8018 -2.5946 -2.4539 31 1 2.2816 -5.3655 -2.7153 32 1 3.8366 -4.5528 -2.4158 33 1 0.9765 -2.9924 -4.2802 34 1 1.5009 -3.5980 -5.8697 35 1 -0.1956 -4.9770 -4.9078 36 1 3.0374 -5.9984 -5.0490 37 1 4.6003 -5.2351 -4.6668 38 1 5.4486 -3.5130 -6.2130 39 1 4.4580 -3.1147 -7.6382 40 1 4.2820 -1.3767 -5.8455 41 1 2.7159 -2.1513 -6.1903 42 1 3.1799 -2.0080 -3.8168 43 1 3.3135 -2.7995 1.8375 44 1 3.2175 -3.4777 4.2027 45 1 1.0486 -3.9925 5.2487 46 1 -1.0251 -3.8192 3.9325 47 1 -0.9302 -3.1304 1.5702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364472149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:03 Heat of formation + Delta-G solvation = -124.488348 kcal Electronic energy + Delta-G solvation = -29987.846857 eV Core-core repulsion = 25941.420814 eV Total energy + Delta-G solvation = -4046.426043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.47535 -40.58600 -39.28416 -37.80695 -36.33918 -35.51147 -34.74672 -32.95537 -32.53723 -31.54156 -29.36023 -28.20223 -27.18566 -26.78092 -25.50357 -23.50563 -23.20484 -22.35648 -21.02772 -20.19872 -18.82086 -18.60732 -18.17956 -17.59481 -17.32663 -17.22343 -16.52203 -16.42405 -16.38275 -16.02580 -15.74865 -15.55724 -15.25560 -15.22261 -15.02108 -14.87226 -14.35636 -14.09214 -13.95558 -13.66847 -13.37138 -13.35715 -13.20868 -13.06684 -12.85312 -12.76309 -12.29450 -12.18945 -12.09620 -11.96638 -11.68681 -11.61785 -11.28018 -11.05768 -10.77784 -10.69401 -10.39954 -9.88122 -9.59160 -9.56510 -9.26797 -8.21331 -6.31925 0.74826 0.79787 1.42602 1.46322 1.52039 1.97126 2.40038 2.43402 2.84480 2.89649 3.08340 3.25733 3.28569 3.59264 3.73263 3.93310 4.03183 4.21640 4.23311 4.29756 4.30744 4.36698 4.42642 4.48162 4.50515 4.55141 4.60349 4.71485 4.72193 4.84043 4.88290 4.91755 4.96580 5.03459 5.12294 5.36365 5.44681 5.62432 5.65169 5.77855 5.78802 5.82827 5.94935 6.08841 6.10838 6.23488 6.40023 6.69094 6.76355 6.79654 7.34738 7.54659 8.86685 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.003964 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.999006 B = 7062.331048 C = 8389.526245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.037 3.963 3 Si 0.951 3.049 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.053 3.947 10 H 0.067 0.933 11 C 0.527 3.473 12 O -0.594 6.594 13 N -0.709 5.709 14 C 0.147 3.853 15 C 0.080 3.920 16 C 0.061 3.939 17 O -0.576 6.576 18 C 0.086 3.914 19 O -0.391 6.391 20 C 0.057 3.943 21 C 0.014 3.986 22 N -0.677 5.677 23 C -0.040 4.040 24 C -0.110 4.110 25 C -0.136 4.136 26 C -0.143 4.143 27 C -0.130 4.130 28 C -0.144 4.144 29 H 0.267 0.733 30 H 0.403 0.597 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.395 0.605 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.047 0.953 42 H 0.349 0.651 43 H 0.095 0.905 44 H 0.136 0.864 45 H 0.147 0.853 46 H 0.140 0.860 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.114 -3.922 -10.378 11.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.165 4.165 3 Si 0.777 3.223 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.032 3.968 10 H 0.085 0.915 11 C 0.316 3.684 12 O -0.475 6.475 13 N -0.361 5.361 14 C 0.023 3.977 15 C -0.012 4.012 16 C -0.019 4.019 17 O -0.383 6.383 18 C 0.008 3.992 19 O -0.309 6.309 20 C -0.020 4.020 21 C -0.115 4.115 22 N -0.311 5.311 23 C -0.041 4.041 24 C -0.128 4.128 25 C -0.154 4.154 26 C -0.161 4.161 27 C -0.147 4.147 28 C -0.163 4.163 29 H 0.076 0.924 30 H 0.238 0.762 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.245 0.755 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.140 0.860 40 H 0.123 0.877 41 H 0.065 0.935 42 H 0.169 0.831 43 H 0.113 0.887 44 H 0.153 0.847 45 H 0.165 0.835 46 H 0.158 0.842 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.355 -5.100 -9.932 11.984 hybrid contribution -1.240 2.129 -0.279 2.480 sum 3.115 -2.970 -10.211 11.081 Atomic orbital electron populations 1.69978 1.07077 1.28015 1.49259 1.25549 0.95468 1.01892 0.93546 0.85709 0.78499 0.79052 0.79059 1.18487 1.21007 1.20709 1.20697 0.92761 0.89290 1.52430 0.92826 1.17995 0.98138 0.92054 0.88598 0.91462 1.21401 0.78019 0.86466 0.82466 1.90553 1.52991 1.32401 1.71592 1.45649 1.59541 1.23217 1.07683 1.21042 0.96653 0.91355 0.88689 1.21687 0.91932 0.93078 0.94533 1.22730 0.92036 0.87352 0.99791 1.86420 1.29486 1.36531 1.85851 1.22472 0.99722 0.95629 0.81369 1.87985 1.77217 1.40151 1.25532 1.22897 0.95025 0.82596 1.01480 1.22806 1.00980 1.00136 0.87567 1.60870 1.54540 1.04988 1.10736 1.20151 0.93189 0.93553 0.97172 1.20856 0.97479 0.99777 0.94708 1.21338 0.98999 1.00452 0.94563 1.21279 0.92032 1.02084 1.00700 1.21308 0.99393 1.00354 0.93682 1.21153 0.97043 1.01593 0.96483 0.92365 0.76161 0.91784 0.92609 0.94218 0.91841 0.75538 0.87703 0.92004 0.92144 0.86042 0.87701 0.93473 0.83127 0.88680 0.84660 0.83495 0.84200 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.64 12.78 21.45 0.27 -47.37 16 2 C 0.04 1.87 5.45 84.65 0.46 2.34 16 3 Si 0.95 40.22 29.54 68.60 2.03 42.25 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.51 -25.85 7.46 25.60 0.19 -25.66 16 8 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 9 C 0.05 2.62 2.43 -13.03 -0.03 2.59 16 10 H 0.07 3.54 7.02 -2.39 -0.02 3.53 16 11 C 0.53 24.39 7.04 87.66 0.62 25.00 16 12 O -0.59 -30.35 15.42 -3.05 -0.05 -30.40 16 13 N -0.71 -26.70 4.92 -463.06 -2.28 -28.98 16 14 C 0.15 4.83 4.59 86.38 0.40 5.23 16 15 C 0.08 2.05 0.52 3.54 0.00 2.05 16 16 C 0.06 1.46 5.26 71.98 0.38 1.83 16 17 O -0.58 -14.03 12.27 -148.98 -1.83 -15.86 16 18 C 0.09 2.06 5.63 72.02 0.41 2.46 16 19 O -0.39 -8.88 10.20 -148.98 -1.52 -10.40 16 20 C 0.06 0.99 7.01 72.02 0.50 1.50 16 21 C 0.01 0.26 6.37 86.32 0.55 0.81 16 22 N -0.68 -16.42 6.35 -469.33 -2.98 -19.40 16 23 C -0.04 -1.92 4.30 -19.86 -0.09 -2.01 16 24 C -0.11 -5.07 8.31 22.27 0.19 -4.88 16 25 C -0.14 -5.21 10.05 22.27 0.22 -4.99 16 26 C -0.14 -4.97 10.05 22.27 0.22 -4.74 16 27 C -0.13 -4.81 10.05 22.27 0.22 -4.59 16 28 C -0.14 -6.44 9.67 22.27 0.22 -6.22 16 29 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 30 H 0.40 14.39 6.20 -92.71 -0.58 13.82 16 31 H 0.06 2.27 7.56 -2.39 -0.02 2.25 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.00 7.01 -2.39 -0.02 0.98 16 34 H 0.06 1.38 6.20 -2.39 -0.01 1.36 16 35 H 0.40 6.37 9.12 -74.06 -0.68 5.69 16 36 H 0.10 2.52 7.75 -2.38 -0.02 2.50 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.05 0.84 6.50 -2.39 -0.02 0.82 16 42 H 0.35 9.13 7.47 -89.70 -0.67 8.46 16 43 H 0.09 4.55 7.89 -2.91 -0.02 4.52 16 44 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 45 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 46 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 47 H 0.11 4.69 7.96 -2.91 -0.02 4.66 16 Total: -1.00 -65.19 378.68 -2.80 -67.99 By element: Atomic # 1 Polarization: 52.37 SS G_CDS: -0.91 Total: 51.46 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 4.46 Total: -9.29 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -4.98 Total: -95.75 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -3.39 Total: -56.66 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -65.19 -2.80 -67.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364472149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.500 kcal (2) G-P(sol) polarization free energy of solvation -65.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds