Wall clock time and date at job start Tue Mar 31 2020 23:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00087 * 2 1 4 4 H 1.48498 * 109.47181 * 239.99943 * 3 2 1 5 5 H 1.48496 * 109.46791 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47392 * 119.99440 * 3 2 1 7 7 C 1.37877 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46918 * 179.97438 * 9 7 2 11 11 C 1.38282 * 119.92812 * 90.00162 * 10 9 7 12 12 C 1.38118 * 120.06992 * 180.02562 * 11 10 9 13 13 C 1.38868 * 119.92959 * 0.02562 * 12 11 10 14 14 N 1.39939 * 120.06780 * 179.97438 * 13 12 11 15 15 C 1.34786 * 119.99734 * 146.84150 * 14 13 12 16 16 O 1.21585 * 119.99861 * 354.68190 * 15 14 13 17 17 N 1.34777 * 119.99536 * 174.68700 * 15 14 13 18 18 C 1.46497 * 119.99630 * 179.97438 * 17 15 14 19 19 H 1.09000 * 109.47263 * 35.00052 * 18 17 15 20 20 C 1.52997 * 109.47323 * 275.00184 * 18 17 15 21 21 C 1.53004 * 109.47501 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47082 * 59.99562 * 21 20 18 23 23 H 1.09000 * 109.47368 * 60.00437 * 22 21 20 24 24 O 1.42894 * 109.47349 * 180.02562 * 22 21 20 25 25 C 1.53002 * 109.47140 * 300.00251 * 22 21 20 26 26 H 1.09005 * 109.46810 * 179.97438 * 25 22 21 27 27 O 1.42901 * 109.47160 * 299.99785 * 25 22 21 28 28 C 1.52999 * 109.47097 * 154.99847 * 18 17 15 29 29 C 1.38863 * 119.85890 * 0.24923 * 13 12 11 30 30 C 1.38118 * 119.92752 * 359.49693 * 29 13 12 31 31 H 0.97001 * 119.99924 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.47563 * 59.99830 * 9 7 2 33 33 H 1.08994 * 109.47144 * 299.99128 * 9 7 2 34 34 H 1.08001 * 119.96619 * 359.97438 * 11 10 9 35 35 H 1.08005 * 120.03474 * 180.02562 * 12 11 10 36 36 H 0.96999 * 120.00603 * 326.83933 * 14 13 12 37 37 H 0.96992 * 120.00205 * 359.97438 * 17 15 14 38 38 H 1.08994 * 109.47408 * 59.99857 * 20 18 17 39 39 H 1.09000 * 109.46809 * 299.99568 * 20 18 17 40 40 H 1.09000 * 109.47099 * 299.99877 * 21 20 18 41 41 H 1.08998 * 109.47667 * 179.97438 * 21 20 18 42 42 H 0.96701 * 114.00345 * 300.00475 * 24 22 21 43 43 H 0.96694 * 113.99967 * 300.00191 * 27 25 22 44 44 H 1.09000 * 109.47368 * 60.00227 * 28 18 17 45 45 H 1.09003 * 109.47381 * 299.99763 * 28 18 17 46 46 H 1.08002 * 120.03469 * 179.72808 * 29 13 12 47 47 H 1.08006 * 119.96408 * 180.25249 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.6787 -4.1689 1.1990 12 6 3.5766 -5.2184 1.2024 13 6 4.0296 -5.7465 0.0006 14 7 4.9399 -6.8095 0.0007 15 6 4.8936 -7.7363 -0.9768 16 8 4.0025 -7.7042 -1.8033 17 7 5.8351 -8.6987 -1.0378 18 6 5.7846 -9.7065 -2.0999 19 1 5.4074 -9.2509 -3.0155 20 6 4.8557 -10.8465 -1.6775 21 6 4.8034 -11.8994 -2.7865 22 6 6.2090 -12.4513 -3.0325 23 1 6.5860 -12.9067 -2.1168 24 8 6.1603 -13.4341 -4.0686 25 6 7.1378 -11.3112 -3.4550 26 1 8.1393 -11.7043 -3.6298 27 8 6.6436 -10.7142 -4.6556 28 6 7.1900 -10.2585 -2.3466 29 6 3.5819 -5.2139 -1.2011 30 6 2.6799 -4.1680 -1.1977 31 1 -0.4850 0.8401 -0.0004 32 1 0.6247 -2.5571 -0.8896 33 1 0.6242 -2.5567 0.8903 34 1 2.3269 -3.7569 2.1333 35 1 3.9261 -5.6278 2.1387 36 1 5.6041 -6.8792 0.7041 37 1 6.5462 -8.7241 -0.3786 38 1 3.8545 -10.4533 -1.5018 39 1 5.2330 -11.3022 -0.7620 40 1 4.4264 -11.4440 -3.7023 41 1 4.1420 -12.7118 -2.4854 42 1 5.5886 -14.1881 -3.8690 43 1 6.5836 -11.3251 -5.4027 44 1 7.5673 -10.7142 -1.4311 45 1 7.8518 -9.4463 -2.6476 46 1 3.9358 -5.6196 -2.1374 47 1 2.3282 -3.7559 -2.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365082367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:47 Heat of formation + Delta-G solvation = -117.535342 kcal Electronic energy + Delta-G solvation = -28053.377097 eV Core-core repulsion = 24007.252559 eV Total energy + Delta-G solvation = -4046.124538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.85 seconds Orbital eigenvalues (eV) -40.76495 -39.81526 -38.28980 -36.50720 -35.90911 -34.72242 -33.45996 -32.81801 -30.73838 -30.34071 -30.19143 -28.46428 -26.40348 -23.57563 -23.23995 -22.55090 -22.26487 -20.94761 -20.55217 -20.01883 -18.44158 -17.87962 -17.61373 -17.18525 -16.46106 -16.24509 -15.77059 -15.22142 -14.90366 -14.66444 -14.43690 -14.18245 -14.14195 -14.05227 -13.73438 -13.54004 -13.09660 -12.97030 -12.75177 -12.55746 -12.20339 -12.06943 -11.88293 -11.74334 -11.52212 -11.35604 -11.22828 -11.02121 -10.77555 -10.59206 -10.48836 -10.34450 -10.11914 -10.09075 -9.85630 -9.42363 -9.26661 -9.18501 -8.37772 -8.21722 -7.28869 -5.99168 -4.03120 2.00955 2.13659 2.55224 3.22137 3.34948 3.38894 3.42277 3.51523 3.76542 4.07677 4.21242 4.33904 4.43058 4.52654 4.62174 4.63309 4.71657 4.77823 4.98001 5.04895 5.20741 5.33807 5.34543 5.44163 5.47856 5.62412 5.63635 5.69587 5.85071 5.94821 6.03169 6.11214 6.15896 6.26849 6.33030 6.62481 6.72946 7.00625 7.00999 7.10854 7.23670 7.28238 7.30181 7.57211 7.78919 7.91767 7.93765 7.96600 8.37702 8.56052 9.02000 9.60206 11.10306 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028833 B = 0.001867 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.878165 B =14995.132317 C =15124.608820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.045 4.045 11 C -0.108 4.108 12 C -0.147 4.147 13 C 0.124 3.876 14 N -0.682 5.682 15 C 0.701 3.299 16 O -0.568 6.568 17 N -0.744 5.744 18 C 0.167 3.833 19 H 0.102 0.898 20 C -0.128 4.128 21 C -0.144 4.144 22 C 0.070 3.930 23 H 0.062 0.938 24 O -0.570 6.570 25 C 0.123 3.877 26 H 0.065 0.935 27 O -0.556 6.556 28 C -0.120 4.120 29 C -0.117 4.117 30 C -0.107 4.107 31 H 0.262 0.738 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.400 0.600 37 H 0.393 0.607 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.383 0.617 43 H 0.385 0.615 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.124 0.876 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.348 -28.337 -2.047 32.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.046 4.046 11 C -0.126 4.126 12 C -0.167 4.167 13 C 0.031 3.969 14 N -0.329 5.329 15 C 0.402 3.598 16 O -0.444 6.444 17 N -0.399 5.399 18 C 0.062 3.938 19 H 0.120 0.880 20 C -0.167 4.167 21 C -0.182 4.182 22 C 0.011 3.989 23 H 0.080 0.920 24 O -0.377 6.377 25 C 0.063 3.937 26 H 0.082 0.918 27 O -0.362 6.362 28 C -0.158 4.158 29 C -0.137 4.137 30 C -0.125 4.125 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.234 0.766 37 H 0.227 0.773 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.231 0.769 43 H 0.233 0.767 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.142 0.858 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.783 -27.266 -2.750 31.624 hybrid contribution 0.783 -0.102 0.785 1.113 sum 16.565 -27.368 -1.965 32.051 Atomic orbital electron populations 1.69951 1.06013 1.26850 1.50543 1.25019 0.94885 0.99217 0.95288 0.86600 0.79520 0.82883 0.78682 1.20189 1.21284 1.20220 1.21038 0.93012 0.89917 1.50901 0.92521 1.18337 0.92579 0.89574 0.98361 1.20693 0.96631 0.95413 0.91873 1.20856 0.97413 0.95863 0.98498 1.20694 1.00553 1.00059 0.95411 1.17279 0.95342 0.89910 0.94348 1.42495 1.36265 1.25541 1.28641 1.15936 0.82448 0.79184 0.82237 1.90969 1.36070 1.75817 1.41512 1.45183 1.30318 1.30812 1.33633 1.20749 0.94515 0.87474 0.91097 0.87997 1.21903 1.01464 0.95570 0.97804 1.22108 0.96579 0.98983 1.00556 1.22640 0.96386 0.89448 0.90469 0.91989 1.86394 1.71586 1.34943 1.44751 1.21583 0.95514 0.90689 0.85960 0.91756 1.86499 1.88109 1.40665 1.20951 1.21815 0.97528 0.98889 0.97569 1.21013 0.99450 0.96408 0.96819 1.20992 0.97402 0.95654 0.98495 0.92835 0.95319 0.95354 0.86073 0.86946 0.76565 0.77335 0.90535 0.91967 0.89959 0.91533 0.76896 0.76707 0.89957 0.89657 0.85765 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.49 9.09 -34.44 -0.31 -14.81 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.05 1.27 5.10 -29.04 -0.15 1.12 16 10 C -0.05 -1.02 5.07 -104.59 -0.53 -1.55 16 11 C -0.11 -2.12 9.69 -39.61 -0.38 -2.51 16 12 C -0.15 -2.45 9.96 -39.39 -0.39 -2.84 16 13 C 0.12 2.11 6.28 -83.69 -0.53 1.58 16 14 N -0.68 -8.82 5.35 -14.22 -0.08 -8.89 16 15 C 0.70 9.65 8.27 -86.91 -0.72 8.93 16 16 O -0.57 -10.37 13.70 5.29 0.07 -10.30 16 17 N -0.74 -6.81 5.08 -58.68 -0.30 -7.11 16 18 C 0.17 1.50 2.31 -67.93 -0.16 1.34 16 19 H 0.10 1.29 7.12 -51.93 -0.37 0.92 16 20 C -0.13 -1.05 5.49 -26.73 -0.15 -1.20 16 21 C -0.14 -0.99 5.40 -26.73 -0.14 -1.13 16 22 C 0.07 0.39 3.25 -26.73 -0.09 0.31 16 23 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 24 O -0.57 -3.17 12.81 -44.89 -0.58 -3.74 16 25 C 0.12 0.80 3.49 -26.75 -0.09 0.71 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 O -0.56 -4.71 11.97 -44.89 -0.54 -5.25 16 28 C -0.12 -0.74 5.13 -26.75 -0.14 -0.88 16 29 C -0.12 -2.26 8.65 -39.39 -0.34 -2.60 16 30 C -0.11 -2.26 9.69 -39.61 -0.38 -2.64 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 35 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 36 H 0.40 3.58 8.83 -40.82 -0.36 3.22 16 37 H 0.39 2.26 8.62 -40.82 -0.35 1.90 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.73 7.68 -51.93 -0.40 0.33 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.38 0.77 9.08 45.56 0.41 1.19 16 43 H 0.38 2.34 8.60 45.56 0.39 2.74 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.12 2.42 6.42 -52.49 -0.34 2.09 16 47 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -35.62 385.14 -10.12 -45.73 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.62 Total: 7.65 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -4.60 Total: -14.63 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.36 Total: -42.03 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -1.04 Total: -19.29 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.62 -10.12 -45.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365082367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.803 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.85 seconds