Wall clock time and date at job start Tue Mar 31 2020 23:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00087 * 2 1 4 4 H 1.48498 * 109.47181 * 239.99943 * 3 2 1 5 5 H 1.48496 * 109.46791 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47392 * 119.99440 * 3 2 1 7 7 C 1.37877 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46918 * 179.97438 * 9 7 2 11 11 C 1.38282 * 119.92812 * 90.00162 * 10 9 7 12 12 C 1.38118 * 120.06992 * 180.02562 * 11 10 9 13 13 C 1.38868 * 119.92959 * 0.02562 * 12 11 10 14 14 N 1.39939 * 120.06780 * 179.97438 * 13 12 11 15 15 C 1.34786 * 119.99734 * 146.84150 * 14 13 12 16 16 O 1.21585 * 119.99861 * 354.68190 * 15 14 13 17 17 N 1.34777 * 119.99536 * 174.68700 * 15 14 13 18 18 C 1.46497 * 119.99630 * 179.97438 * 17 15 14 19 19 H 1.09000 * 109.47263 * 35.00052 * 18 17 15 20 20 C 1.52997 * 109.47323 * 275.00184 * 18 17 15 21 21 C 1.53004 * 109.47501 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47082 * 59.99562 * 21 20 18 23 23 H 1.09000 * 109.47368 * 60.00437 * 22 21 20 24 24 O 1.42894 * 109.47349 * 180.02562 * 22 21 20 25 25 C 1.53002 * 109.47140 * 300.00251 * 22 21 20 26 26 H 1.09005 * 109.46810 * 179.97438 * 25 22 21 27 27 O 1.42901 * 109.47160 * 299.99785 * 25 22 21 28 28 C 1.52999 * 109.47097 * 154.99847 * 18 17 15 29 29 C 1.38863 * 119.85890 * 0.24923 * 13 12 11 30 30 C 1.38118 * 119.92752 * 359.49693 * 29 13 12 31 31 H 0.97001 * 119.99924 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.47563 * 59.99830 * 9 7 2 33 33 H 1.08994 * 109.47144 * 299.99128 * 9 7 2 34 34 H 1.08001 * 119.96619 * 359.97438 * 11 10 9 35 35 H 1.08005 * 120.03474 * 180.02562 * 12 11 10 36 36 H 0.96999 * 120.00603 * 326.83933 * 14 13 12 37 37 H 0.96992 * 120.00205 * 359.97438 * 17 15 14 38 38 H 1.08994 * 109.47408 * 59.99857 * 20 18 17 39 39 H 1.09000 * 109.46809 * 299.99568 * 20 18 17 40 40 H 1.09000 * 109.47099 * 299.99877 * 21 20 18 41 41 H 1.08998 * 109.47667 * 179.97438 * 21 20 18 42 42 H 0.96701 * 114.00345 * 300.00475 * 24 22 21 43 43 H 0.96694 * 113.99967 * 300.00191 * 27 25 22 44 44 H 1.09000 * 109.47368 * 60.00227 * 28 18 17 45 45 H 1.09003 * 109.47381 * 299.99763 * 28 18 17 46 46 H 1.08002 * 120.03469 * 179.72808 * 29 13 12 47 47 H 1.08006 * 119.96408 * 180.25249 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.6787 -4.1689 1.1990 12 6 3.5766 -5.2184 1.2024 13 6 4.0296 -5.7465 0.0006 14 7 4.9399 -6.8095 0.0007 15 6 4.8936 -7.7363 -0.9768 16 8 4.0025 -7.7042 -1.8033 17 7 5.8351 -8.6987 -1.0378 18 6 5.7846 -9.7065 -2.0999 19 1 5.4074 -9.2509 -3.0155 20 6 4.8557 -10.8465 -1.6775 21 6 4.8034 -11.8994 -2.7865 22 6 6.2090 -12.4513 -3.0325 23 1 6.5860 -12.9067 -2.1168 24 8 6.1603 -13.4341 -4.0686 25 6 7.1378 -11.3112 -3.4550 26 1 8.1393 -11.7043 -3.6298 27 8 6.6436 -10.7142 -4.6556 28 6 7.1900 -10.2585 -2.3466 29 6 3.5819 -5.2139 -1.2011 30 6 2.6799 -4.1680 -1.1977 31 1 -0.4850 0.8401 -0.0004 32 1 0.6247 -2.5571 -0.8896 33 1 0.6242 -2.5567 0.8903 34 1 2.3269 -3.7569 2.1333 35 1 3.9261 -5.6278 2.1387 36 1 5.6041 -6.8792 0.7041 37 1 6.5462 -8.7241 -0.3786 38 1 3.8545 -10.4533 -1.5018 39 1 5.2330 -11.3022 -0.7620 40 1 4.4264 -11.4440 -3.7023 41 1 4.1420 -12.7118 -2.4854 42 1 5.5886 -14.1881 -3.8690 43 1 6.5836 -11.3251 -5.4027 44 1 7.5673 -10.7142 -1.4311 45 1 7.8518 -9.4463 -2.6476 46 1 3.9358 -5.6196 -2.1374 47 1 2.3282 -3.7559 -2.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365082367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:41 Heat of formation + Delta-G solvation = -146.070912 kcal Electronic energy + Delta-G solvation = -28054.614492 eV Core-core repulsion = 24007.252559 eV Total energy + Delta-G solvation = -4047.361933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.07 seconds Orbital eigenvalues (eV) -41.78898 -40.60344 -39.61372 -37.15761 -36.59494 -36.11639 -35.02152 -34.07410 -32.10637 -31.75399 -31.18391 -29.32003 -28.07944 -25.23979 -23.90037 -23.79125 -23.43789 -22.14997 -21.60814 -21.01525 -19.47954 -18.68623 -18.47808 -18.30630 -17.79572 -17.26001 -16.87912 -16.65941 -16.16852 -15.92293 -15.74446 -15.21283 -15.00137 -14.82029 -14.62311 -14.54673 -14.48173 -14.24715 -14.04433 -13.66748 -13.59632 -13.28063 -13.16780 -12.75049 -12.59117 -12.53069 -12.45674 -12.33572 -12.15612 -12.03516 -11.70004 -11.61952 -11.54365 -11.26800 -10.93833 -10.87881 -10.64315 -10.58705 -10.10874 -9.74914 -8.81128 -8.16580 -6.31676 0.50287 0.58862 1.40268 1.43687 1.51740 1.54854 2.07227 2.41392 3.03610 3.06563 3.12046 3.22316 3.33547 3.67594 3.81724 3.99208 4.04608 4.08497 4.16834 4.22810 4.30242 4.37078 4.39927 4.50740 4.60914 4.67217 4.71210 4.74970 4.82398 4.96097 5.02758 5.08564 5.13597 5.20831 5.30272 5.34080 5.34850 5.43481 5.50281 5.51882 5.64159 5.77105 6.00147 6.10362 6.14558 6.27816 6.75564 6.80728 6.88087 7.02871 7.36474 7.51257 8.90948 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028833 B = 0.001867 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.878165 B =14995.132317 C =15124.608820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.058 3.942 10 C -0.078 4.078 11 C -0.111 4.111 12 C -0.128 4.128 13 C 0.141 3.859 14 N -0.667 5.667 15 C 0.697 3.303 16 O -0.618 6.618 17 N -0.720 5.720 18 C 0.167 3.833 19 H 0.057 0.943 20 C -0.123 4.123 21 C -0.140 4.140 22 C 0.078 3.922 23 H 0.088 0.912 24 O -0.582 6.582 25 C 0.114 3.886 26 H 0.079 0.921 27 O -0.581 6.581 28 C -0.112 4.112 29 C -0.125 4.125 30 C -0.120 4.120 31 H 0.265 0.735 32 H -0.003 1.003 33 H 0.008 0.992 34 H 0.128 0.872 35 H 0.161 0.839 36 H 0.425 0.575 37 H 0.416 0.584 38 H 0.041 0.959 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.398 0.602 43 H 0.391 0.609 44 H 0.119 0.881 45 H 0.081 0.919 46 H 0.118 0.882 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.816 -30.373 0.020 36.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.021 3.979 10 C -0.079 4.079 11 C -0.130 4.130 12 C -0.149 4.149 13 C 0.046 3.954 14 N -0.316 5.316 15 C 0.397 3.603 16 O -0.497 6.497 17 N -0.376 5.376 18 C 0.062 3.938 19 H 0.075 0.925 20 C -0.162 4.162 21 C -0.179 4.179 22 C 0.019 3.981 23 H 0.106 0.894 24 O -0.391 6.391 25 C 0.054 3.946 26 H 0.096 0.904 27 O -0.388 6.388 28 C -0.150 4.150 29 C -0.146 4.146 30 C -0.139 4.139 31 H 0.074 0.926 32 H 0.015 0.985 33 H 0.026 0.974 34 H 0.146 0.854 35 H 0.179 0.821 36 H 0.263 0.737 37 H 0.253 0.747 38 H 0.060 0.940 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.249 0.751 43 H 0.240 0.760 44 H 0.137 0.863 45 H 0.100 0.900 46 H 0.136 0.864 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 19.320 -29.362 -0.648 35.155 hybrid contribution -0.277 0.367 0.094 0.469 sum 19.043 -28.996 -0.554 34.694 Atomic orbital electron populations 1.70085 1.07712 1.27976 1.51330 1.25970 0.95807 1.03211 0.94642 0.85467 0.78256 0.77952 0.79183 1.19547 1.20607 1.18875 1.21362 0.93133 0.91155 1.50888 0.92583 1.18080 0.92875 0.91221 0.95759 1.20391 0.97907 0.95827 0.93738 1.20974 0.97925 0.96613 0.97463 1.21000 0.98547 0.98223 0.97093 1.17330 0.94662 0.89860 0.93546 1.42260 1.35979 1.24119 1.29279 1.16163 0.82619 0.79830 0.81638 1.90957 1.38331 1.77060 1.43334 1.44970 1.29441 1.29353 1.33830 1.20741 0.96693 0.87248 0.89162 0.92475 1.21830 0.99369 0.95540 0.99440 1.22071 0.98167 0.98867 0.98778 1.22557 0.94878 0.89285 0.91368 0.89442 1.86368 1.72087 1.35557 1.45114 1.21812 0.96400 0.91087 0.85291 0.90359 1.86488 1.88444 1.41835 1.22074 1.21830 0.95106 0.98935 0.99136 1.20979 0.99550 0.96122 0.97926 1.20889 0.98531 0.96764 0.97697 0.92606 0.98453 0.97414 0.85407 0.82129 0.73656 0.74688 0.93992 0.89173 0.92873 0.90094 0.75124 0.75984 0.86275 0.90016 0.86380 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.53 -30.97 9.09 25.60 0.23 -30.73 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.06 3.22 5.10 29.10 0.15 3.37 16 10 C -0.08 -3.65 5.07 -19.84 -0.10 -3.75 16 11 C -0.11 -4.32 9.69 22.25 0.22 -4.11 16 12 C -0.13 -3.93 9.96 22.39 0.22 -3.70 16 13 C 0.14 4.53 6.28 38.15 0.24 4.77 16 14 N -0.67 -15.36 5.35 -317.17 -1.70 -17.06 16 15 C 0.70 18.24 8.27 179.05 1.48 19.72 16 16 O -0.62 -23.00 13.70 -3.98 -0.05 -23.05 16 17 N -0.72 -11.52 5.08 -457.82 -2.33 -13.84 16 18 C 0.17 2.80 2.31 44.99 0.10 2.91 16 19 H 0.06 1.52 7.12 -2.39 -0.02 1.50 16 20 C -0.12 -1.85 5.49 30.59 0.17 -1.68 16 21 C -0.14 -1.77 5.40 30.60 0.17 -1.61 16 22 C 0.08 0.68 3.25 30.59 0.10 0.77 16 23 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 24 O -0.58 -5.21 12.81 -139.74 -1.79 -7.00 16 25 C 0.11 1.24 3.49 30.58 0.11 1.35 16 26 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 27 O -0.58 -9.79 11.97 -139.74 -1.67 -11.46 16 28 C -0.11 -1.08 5.13 30.58 0.16 -0.92 16 29 C -0.13 -4.93 8.65 22.39 0.19 -4.73 16 30 C -0.12 -5.35 9.69 22.25 0.22 -5.13 16 31 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.00 -0.17 8.08 -2.39 -0.02 -0.19 16 33 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 34 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.42 5.68 8.83 -92.71 -0.82 4.86 16 37 H 0.42 3.05 8.62 -92.71 -0.80 2.26 16 38 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 0.98 7.68 -2.39 -0.02 0.97 16 41 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.40 0.68 9.08 -74.06 -0.67 0.01 16 43 H 0.39 4.84 8.60 -74.06 -0.64 4.20 16 44 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.12 4.78 6.42 -2.91 -0.02 4.76 16 47 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -82.80 385.14 -3.02 -85.81 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -1.90 Total: 19.53 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 4.11 Total: -22.92 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -3.74 Total: -88.06 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -3.52 Total: -41.51 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -82.80 -3.02 -85.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365082367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.258 kcal (2) G-P(sol) polarization free energy of solvation -82.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.07 seconds