Wall clock time and date at job start Tue Mar 31 2020 23:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99924 * 2 1 4 4 H 1.48502 * 109.47432 * 269.99984 * 3 2 1 5 5 H 1.48501 * 109.47361 * 30.00514 * 3 2 1 6 6 H 1.48504 * 109.46892 * 150.00807 * 3 2 1 7 7 C 1.37875 * 119.99635 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00067 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99870 * 179.97438 * 7 2 1 10 10 C 1.50694 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.38279 * 119.92979 * 90.00458 * 10 9 7 12 12 C 1.38121 * 120.06859 * 179.97438 * 11 10 9 13 13 C 1.38861 * 119.93124 * 359.97438 * 12 11 10 14 14 N 1.39944 * 120.07203 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99836 * 35.08163 * 14 13 12 16 16 O 1.21593 * 120.00168 * 355.10694 * 15 14 13 17 17 N 1.34774 * 120.00486 * 175.38091 * 15 14 13 18 18 C 1.46497 * 120.00377 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.46795 * 324.99017 * 18 17 15 20 20 C 1.52995 * 109.47365 * 84.99842 * 18 17 15 21 21 C 1.53007 * 109.46832 * 180.02562 * 20 18 17 22 22 C 1.52998 * 109.46939 * 299.99422 * 21 20 18 23 23 H 1.09002 * 109.47383 * 179.97438 * 22 21 20 24 24 O 1.42903 * 109.47659 * 300.00565 * 22 21 20 25 25 C 1.53005 * 109.47250 * 60.00543 * 22 21 20 26 26 H 1.09000 * 109.46986 * 59.99279 * 25 22 21 27 27 O 1.42896 * 109.47501 * 179.97438 * 25 22 21 28 28 C 1.53002 * 109.46728 * 204.99852 * 18 17 15 29 29 C 1.38869 * 119.85944 * 0.25325 * 13 12 11 30 30 C 1.38110 * 119.93036 * 359.49092 * 29 13 12 31 31 H 0.97006 * 119.99887 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47074 * 59.99573 * 9 7 2 33 33 H 1.08998 * 109.47169 * 300.00058 * 9 7 2 34 34 H 1.08000 * 119.96814 * 359.97438 * 11 10 9 35 35 H 1.07997 * 120.03183 * 179.97438 * 12 11 10 36 36 H 0.96998 * 120.00527 * 215.08084 * 14 13 12 37 37 H 0.97005 * 119.99466 * 359.97438 * 17 15 14 38 38 H 1.08994 * 109.47002 * 299.99628 * 20 18 17 39 39 H 1.09000 * 109.47224 * 60.00235 * 20 18 17 40 40 H 1.08992 * 109.47275 * 59.99732 * 21 20 18 41 41 H 1.09005 * 109.46923 * 179.97438 * 21 20 18 42 42 H 0.96705 * 113.99414 * 300.00000 * 24 22 21 43 43 H 0.96698 * 113.99939 * 299.99942 * 27 25 22 44 44 H 1.09000 * 109.47451 * 299.99514 * 28 18 17 45 45 H 1.09005 * 109.47207 * 59.99780 * 28 18 17 46 46 H 1.07999 * 120.03423 * 179.73005 * 29 13 12 47 47 H 1.07999 * 119.96669 * 180.27787 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0137 -2.6149 -0.0010 11 6 4.2433 -3.2656 -1.1993 12 6 4.7041 -4.5677 -1.2025 13 6 4.9374 -5.2231 -0.0008 14 7 5.4039 -6.5425 -0.0006 15 6 6.2599 -6.9547 -0.9565 16 8 6.5576 -6.2083 -1.8690 17 7 6.7817 -8.1962 -0.9041 18 6 7.7125 -8.6441 -1.9429 19 1 7.4231 -8.2121 -2.9008 20 6 9.1301 -8.1919 -1.5868 21 6 10.1021 -8.6592 -2.6722 22 6 10.0630 -10.1856 -2.7690 23 1 10.7551 -10.5185 -3.5425 24 8 10.4425 -10.7526 -1.5133 25 6 8.6453 -10.6379 -3.1251 26 1 8.3558 -10.2054 -4.0828 27 8 8.6088 -12.0635 -3.2161 28 6 7.6731 -10.1706 -2.0392 29 6 4.7014 -4.5684 1.2010 30 6 4.2456 -3.2647 1.1975 31 1 -0.4850 0.8401 0.0004 32 1 3.8751 -0.6804 0.8888 33 1 3.8745 -0.6801 -0.8911 34 1 4.0621 -2.7553 -2.1337 35 1 4.8829 -5.0755 -2.1388 36 1 5.1112 -7.1604 0.6874 37 1 6.5414 -8.7930 -0.1781 38 1 9.1581 -7.1045 -1.5183 39 1 9.4195 -8.6241 -0.6289 40 1 9.8126 -8.2268 -3.6299 41 1 11.1120 -8.3367 -2.4187 42 1 11.3322 -10.5077 -1.2242 43 1 9.2020 -12.4301 -3.8860 44 1 7.9625 -10.6027 -1.0812 45 1 6.6631 -10.4927 -2.2928 46 1 4.8777 -5.0769 2.1373 47 1 4.0661 -2.7535 2.1318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365082370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:07 Heat of formation + Delta-G solvation = -110.991427 kcal Electronic energy + Delta-G solvation = -28047.279836 eV Core-core repulsion = 24001.439064 eV Total energy + Delta-G solvation = -4045.840773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.80781 -39.83737 -38.36486 -36.41247 -36.14667 -34.79403 -33.45279 -32.77131 -30.84436 -30.37841 -30.26197 -28.74416 -26.81774 -23.57024 -23.09594 -22.45948 -22.32216 -20.94720 -20.59757 -20.04167 -18.53213 -18.02597 -17.32708 -17.07015 -16.73491 -16.08951 -15.73822 -15.54656 -15.37719 -14.86337 -14.63179 -14.17899 -14.08081 -13.92816 -13.64645 -13.32456 -13.26186 -13.14306 -12.83086 -12.52685 -12.41586 -12.31316 -11.89887 -11.77045 -11.66157 -11.45836 -11.18411 -10.99183 -10.84824 -10.49062 -10.43518 -10.29431 -10.24432 -10.13429 -9.86430 -9.50973 -9.34002 -9.23968 -8.55460 -8.28603 -7.36328 -6.04551 -4.03194 1.92842 2.06765 2.47527 3.14227 3.31284 3.38742 3.42045 3.50081 3.85002 4.00170 4.15466 4.38340 4.44321 4.45016 4.48549 4.57271 4.71549 4.83465 4.94631 4.97347 5.19721 5.27342 5.36350 5.38623 5.42960 5.58192 5.64462 5.65952 5.81318 5.88284 5.94438 6.01938 6.06363 6.16976 6.28253 6.56785 6.63682 6.88724 7.00127 7.04278 7.08821 7.10601 7.14178 7.19350 7.64075 7.65744 7.75787 7.87564 8.49563 8.53251 9.01219 9.56014 11.08386 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032657 B = 0.001861 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.186165 B =15044.594591 C =15165.944846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.040 4.040 11 C -0.107 4.107 12 C -0.116 4.116 13 C 0.125 3.875 14 N -0.681 5.681 15 C 0.703 3.297 16 O -0.572 6.572 17 N -0.741 5.741 18 C 0.170 3.830 19 H 0.090 0.910 20 C -0.129 4.129 21 C -0.150 4.150 22 C 0.072 3.928 23 H 0.057 0.943 24 O -0.552 6.552 25 C 0.120 3.880 26 H 0.071 0.929 27 O -0.557 6.557 28 C -0.118 4.118 29 C -0.144 4.144 30 C -0.106 4.106 31 H 0.264 0.736 32 H 0.027 0.973 33 H 0.023 0.977 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.402 0.598 37 H 0.396 0.604 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.375 0.625 43 H 0.378 0.622 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.114 0.886 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.395 -23.798 -3.648 32.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.041 4.041 11 C -0.125 4.125 12 C -0.136 4.136 13 C 0.032 3.968 14 N -0.328 5.328 15 C 0.404 3.596 16 O -0.449 6.449 17 N -0.396 5.396 18 C 0.065 3.935 19 H 0.108 0.892 20 C -0.167 4.167 21 C -0.188 4.188 22 C 0.013 3.987 23 H 0.075 0.925 24 O -0.357 6.357 25 C 0.060 3.940 26 H 0.089 0.911 27 O -0.362 6.362 28 C -0.156 4.156 29 C -0.165 4.165 30 C -0.125 4.125 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.236 0.764 37 H 0.230 0.770 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.222 0.778 43 H 0.225 0.775 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.132 0.868 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 21.490 -23.208 -4.062 31.889 hybrid contribution 1.063 0.518 0.285 1.216 sum 22.552 -22.689 -3.778 32.213 Atomic orbital electron populations 1.69905 1.06244 1.26907 1.50876 1.25008 0.94750 0.99030 0.94578 0.86801 0.80387 0.83659 0.78640 1.20182 1.21316 1.18922 1.20950 0.88311 0.94630 1.51000 0.90802 1.18801 0.97391 0.88764 0.97326 1.20290 0.93541 0.98081 0.92182 1.20987 0.99139 0.94084 0.98317 1.21151 0.99663 0.95540 0.97221 1.17313 1.01786 0.83422 0.94306 1.42451 1.47420 1.11832 1.31128 1.15911 0.78913 0.82026 0.82756 1.90935 1.64801 1.54051 1.35073 1.45100 1.49828 1.14435 1.30222 1.20634 0.88298 0.92798 0.91786 0.89218 1.21893 0.93840 1.01887 0.99130 1.22179 1.00513 0.95435 1.00672 1.22595 0.96811 0.92685 0.86626 0.92517 1.86589 1.37271 1.74334 1.37506 1.21710 0.92522 0.81666 0.98119 0.91075 1.86543 1.67403 1.19616 1.62611 1.21632 0.99635 0.93971 1.00343 1.20713 1.04800 0.95388 0.95571 1.20825 0.99668 0.93605 0.98364 0.92661 0.95446 0.95849 0.86079 0.85090 0.76369 0.76988 0.90837 0.90992 0.90442 0.90919 0.77815 0.77514 0.89641 0.90536 0.86761 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.51 -14.62 9.65 -34.44 -0.33 -14.95 16 8 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16 9 C 0.01 0.35 4.17 -29.04 -0.12 0.23 16 10 C -0.04 -0.87 5.07 -104.59 -0.53 -1.40 16 11 C -0.11 -2.17 9.69 -39.61 -0.38 -2.55 16 12 C -0.12 -2.16 8.70 -39.39 -0.34 -2.50 16 13 C 0.12 2.05 6.30 -83.69 -0.53 1.53 16 14 N -0.68 -8.58 5.34 -14.22 -0.08 -8.66 16 15 C 0.70 9.28 8.38 -86.92 -0.73 8.55 16 16 O -0.57 -9.77 13.43 5.28 0.07 -9.70 16 17 N -0.74 -6.75 5.08 -58.68 -0.30 -7.04 16 18 C 0.17 1.45 2.46 -67.93 -0.17 1.28 16 19 H 0.09 0.91 7.57 -51.93 -0.39 0.52 16 20 C -0.13 -1.02 5.35 -26.73 -0.14 -1.17 16 21 C -0.15 -0.85 5.64 -26.73 -0.15 -1.00 16 22 C 0.07 0.38 3.43 -26.73 -0.09 0.29 16 23 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 24 O -0.55 -3.48 11.87 -44.83 -0.53 -4.01 16 25 C 0.12 0.77 3.25 -26.70 -0.09 0.69 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 O -0.56 -4.09 13.21 -44.83 -0.59 -4.68 16 28 C -0.12 -0.88 4.90 -26.70 -0.13 -1.01 16 29 C -0.14 -2.34 9.97 -39.39 -0.39 -2.73 16 30 C -0.11 -2.02 9.69 -39.61 -0.38 -2.40 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.03 0.65 7.14 -51.93 -0.37 0.28 16 33 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 34 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 35 H 0.13 2.46 6.21 -52.49 -0.33 2.13 16 36 H 0.40 3.59 8.84 -40.82 -0.36 3.23 16 37 H 0.40 2.55 8.62 -40.82 -0.35 2.20 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.57 7.68 -51.93 -0.40 0.17 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.38 1.02 9.08 45.56 0.41 1.43 16 43 H 0.38 1.19 9.08 45.56 0.41 1.61 16 44 H 0.08 0.70 7.68 -51.93 -0.40 0.31 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 47 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -36.51 381.96 -9.73 -46.24 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.55 Total: 7.43 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -4.61 Total: -15.27 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.40 Total: -42.68 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -1.05 Total: -18.39 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.51 -9.73 -46.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365082370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.755 kcal (2) G-P(sol) polarization free energy of solvation -36.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds