Wall clock time and date at job start Tue Mar 31 2020 23:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99924 * 2 1 4 4 H 1.48502 * 109.47432 * 269.99984 * 3 2 1 5 5 H 1.48501 * 109.47361 * 30.00514 * 3 2 1 6 6 H 1.48504 * 109.46892 * 150.00807 * 3 2 1 7 7 C 1.37875 * 119.99635 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00067 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99870 * 179.97438 * 7 2 1 10 10 C 1.50694 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.38279 * 119.92979 * 90.00458 * 10 9 7 12 12 C 1.38121 * 120.06859 * 179.97438 * 11 10 9 13 13 C 1.38861 * 119.93124 * 359.97438 * 12 11 10 14 14 N 1.39944 * 120.07203 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99836 * 35.08163 * 14 13 12 16 16 O 1.21593 * 120.00168 * 355.10694 * 15 14 13 17 17 N 1.34774 * 120.00486 * 175.38091 * 15 14 13 18 18 C 1.46497 * 120.00377 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.46795 * 324.99017 * 18 17 15 20 20 C 1.52995 * 109.47365 * 84.99842 * 18 17 15 21 21 C 1.53007 * 109.46832 * 180.02562 * 20 18 17 22 22 C 1.52998 * 109.46939 * 299.99422 * 21 20 18 23 23 H 1.09002 * 109.47383 * 179.97438 * 22 21 20 24 24 O 1.42903 * 109.47659 * 300.00565 * 22 21 20 25 25 C 1.53005 * 109.47250 * 60.00543 * 22 21 20 26 26 H 1.09000 * 109.46986 * 59.99279 * 25 22 21 27 27 O 1.42896 * 109.47501 * 179.97438 * 25 22 21 28 28 C 1.53002 * 109.46728 * 204.99852 * 18 17 15 29 29 C 1.38869 * 119.85944 * 0.25325 * 13 12 11 30 30 C 1.38110 * 119.93036 * 359.49092 * 29 13 12 31 31 H 0.97006 * 119.99887 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.47074 * 59.99573 * 9 7 2 33 33 H 1.08998 * 109.47169 * 300.00058 * 9 7 2 34 34 H 1.08000 * 119.96814 * 359.97438 * 11 10 9 35 35 H 1.07997 * 120.03183 * 179.97438 * 12 11 10 36 36 H 0.96998 * 120.00527 * 215.08084 * 14 13 12 37 37 H 0.97005 * 119.99466 * 359.97438 * 17 15 14 38 38 H 1.08994 * 109.47002 * 299.99628 * 20 18 17 39 39 H 1.09000 * 109.47224 * 60.00235 * 20 18 17 40 40 H 1.08992 * 109.47275 * 59.99732 * 21 20 18 41 41 H 1.09005 * 109.46923 * 179.97438 * 21 20 18 42 42 H 0.96705 * 113.99414 * 300.00000 * 24 22 21 43 43 H 0.96698 * 113.99939 * 299.99942 * 27 25 22 44 44 H 1.09000 * 109.47451 * 299.99514 * 28 18 17 45 45 H 1.09005 * 109.47207 * 59.99780 * 28 18 17 46 46 H 1.07999 * 120.03423 * 179.73005 * 29 13 12 47 47 H 1.07999 * 119.96669 * 180.27787 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0137 -2.6149 -0.0010 11 6 4.2433 -3.2656 -1.1993 12 6 4.7041 -4.5677 -1.2025 13 6 4.9374 -5.2231 -0.0008 14 7 5.4039 -6.5425 -0.0006 15 6 6.2599 -6.9547 -0.9565 16 8 6.5576 -6.2083 -1.8690 17 7 6.7817 -8.1962 -0.9041 18 6 7.7125 -8.6441 -1.9429 19 1 7.4231 -8.2121 -2.9008 20 6 9.1301 -8.1919 -1.5868 21 6 10.1021 -8.6592 -2.6722 22 6 10.0630 -10.1856 -2.7690 23 1 10.7551 -10.5185 -3.5425 24 8 10.4425 -10.7526 -1.5133 25 6 8.6453 -10.6379 -3.1251 26 1 8.3558 -10.2054 -4.0828 27 8 8.6088 -12.0635 -3.2161 28 6 7.6731 -10.1706 -2.0392 29 6 4.7014 -4.5684 1.2010 30 6 4.2456 -3.2647 1.1975 31 1 -0.4850 0.8401 0.0004 32 1 3.8751 -0.6804 0.8888 33 1 3.8745 -0.6801 -0.8911 34 1 4.0621 -2.7553 -2.1337 35 1 4.8829 -5.0755 -2.1388 36 1 5.1112 -7.1604 0.6874 37 1 6.5414 -8.7930 -0.1781 38 1 9.1581 -7.1045 -1.5183 39 1 9.4195 -8.6241 -0.6289 40 1 9.8126 -8.2268 -3.6299 41 1 11.1120 -8.3367 -2.4187 42 1 11.3322 -10.5077 -1.2242 43 1 9.2020 -12.4301 -3.8860 44 1 7.9625 -10.6027 -1.0812 45 1 6.6631 -10.4927 -2.2928 46 1 4.8777 -5.0769 2.1373 47 1 4.0661 -2.7535 2.1318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365082370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:06 Heat of formation + Delta-G solvation = -140.543384 kcal Electronic energy + Delta-G solvation = -28048.561305 eV Core-core repulsion = 24001.439064 eV Total energy + Delta-G solvation = -4047.122242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 10.73 seconds Orbital eigenvalues (eV) -41.80437 -40.59255 -39.61770 -37.05833 -36.78034 -36.11202 -34.96823 -34.02989 -32.42862 -31.75041 -31.02507 -29.54748 -28.37106 -24.99483 -23.83635 -23.63900 -23.49775 -22.10492 -21.59682 -21.05967 -19.50458 -18.94990 -18.81981 -18.09378 -17.74700 -16.84988 -16.70165 -16.44006 -16.37020 -16.01456 -15.93828 -15.76310 -15.21215 -14.90727 -14.60692 -14.40186 -14.25017 -14.22952 -13.92436 -13.82079 -13.74856 -13.49162 -13.22665 -13.04872 -12.51453 -12.48783 -12.32995 -12.24050 -11.86487 -11.80378 -11.79136 -11.64401 -11.54516 -11.23847 -10.93244 -10.80245 -10.77136 -10.76067 -10.15266 -9.74381 -8.79539 -8.28156 -6.32817 0.49053 0.59497 1.37974 1.38926 1.51026 1.51371 2.04804 2.36760 2.97097 3.00409 3.05938 3.23826 3.42896 3.66685 3.89921 3.95678 3.98870 4.06597 4.17675 4.19583 4.28124 4.33871 4.38267 4.43603 4.59311 4.66154 4.67803 4.74250 4.86423 4.90083 5.07948 5.08218 5.08841 5.09051 5.19168 5.24721 5.29447 5.40903 5.45762 5.49742 5.58347 5.66698 5.95731 6.03184 6.19233 6.31602 6.73226 6.85064 6.93041 6.97212 7.30288 7.47222 8.88173 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032657 B = 0.001861 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.186165 B =15044.594591 C =15165.944846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.245 1.245 7 C -0.517 4.517 8 H 0.029 0.971 9 C 0.021 3.979 10 C -0.076 4.076 11 C -0.120 4.120 12 C -0.126 4.126 13 C 0.138 3.862 14 N -0.669 5.669 15 C 0.701 3.299 16 O -0.612 6.612 17 N -0.722 5.722 18 C 0.171 3.829 19 H 0.072 0.928 20 C -0.123 4.123 21 C -0.146 4.146 22 C 0.079 3.921 23 H 0.080 0.920 24 O -0.570 6.570 25 C 0.114 3.886 26 H 0.081 0.919 27 O -0.576 6.576 28 C -0.109 4.109 29 C -0.131 4.131 30 C -0.112 4.112 31 H 0.267 0.733 32 H 0.035 0.965 33 H 0.025 0.975 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.423 0.577 37 H 0.413 0.587 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.390 0.610 43 H 0.395 0.605 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.158 0.842 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.040 -25.164 -2.806 35.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.168 1.168 7 C -0.555 4.555 8 H 0.047 0.953 9 C -0.016 4.016 10 C -0.077 4.077 11 C -0.139 4.139 12 C -0.147 4.147 13 C 0.043 3.957 14 N -0.318 5.318 15 C 0.401 3.599 16 O -0.492 6.492 17 N -0.378 5.378 18 C 0.066 3.934 19 H 0.091 0.909 20 C -0.162 4.162 21 C -0.184 4.184 22 C 0.020 3.980 23 H 0.097 0.903 24 O -0.378 6.378 25 C 0.054 3.946 26 H 0.099 0.901 27 O -0.384 6.384 28 C -0.147 4.147 29 C -0.152 4.152 30 C -0.131 4.131 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.261 0.739 37 H 0.249 0.751 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.239 0.761 43 H 0.245 0.755 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.175 0.825 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 24.172 -24.657 -3.194 34.677 hybrid contribution 0.251 0.726 0.006 0.768 sum 24.424 -23.932 -3.188 34.342 Atomic orbital electron populations 1.70061 1.08244 1.28195 1.52435 1.25989 0.95641 1.03377 0.94082 0.85650 0.79581 0.78175 0.79229 1.19324 1.20718 1.16803 1.21170 0.90792 0.93004 1.50556 0.95303 1.18646 0.94316 0.91149 0.97496 1.20177 0.96427 0.97311 0.93752 1.20981 1.00039 0.95015 0.97854 1.21158 1.00199 0.95088 0.98209 1.17386 0.99867 0.84742 0.93664 1.42266 1.47081 1.10788 1.31688 1.16071 0.78885 0.82748 0.82187 1.90919 1.66092 1.55499 1.36677 1.44972 1.48968 1.13150 1.30663 1.20682 0.88416 0.93534 0.90747 0.90934 1.21807 0.93990 1.00090 1.00284 1.22170 1.00530 0.95959 0.99743 1.22544 0.96517 0.91927 0.87027 0.90259 1.86549 1.38690 1.74591 1.37939 1.21784 0.93056 0.81579 0.98144 0.90122 1.86489 1.68321 1.19950 1.63639 1.21518 0.99884 0.92672 1.00663 1.21020 1.02801 0.94224 0.97110 1.21013 0.99506 0.94880 0.97691 0.92408 0.94702 0.95672 0.86845 0.85563 0.73865 0.75085 0.93503 0.90668 0.90453 0.89502 0.76077 0.75535 0.90115 0.90979 0.82472 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 2 C 0.01 0.35 5.47 84.65 0.46 0.81 16 3 Si 0.95 44.67 27.47 68.60 1.88 46.56 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.24 -10.62 6.54 99.48 0.65 -9.97 16 7 C -0.52 -30.59 9.65 25.60 0.25 -30.35 16 8 H 0.03 1.90 7.98 -2.91 -0.02 1.88 16 9 C 0.02 1.04 4.17 29.10 0.12 1.16 16 10 C -0.08 -3.32 5.07 -19.84 -0.10 -3.42 16 11 C -0.12 -5.03 9.69 22.25 0.22 -4.81 16 12 C -0.13 -4.74 8.70 22.39 0.19 -4.55 16 13 C 0.14 4.34 6.30 38.15 0.24 4.58 16 14 N -0.67 -15.41 5.34 -317.18 -1.70 -17.11 16 15 C 0.70 17.64 8.38 179.06 1.50 19.14 16 16 O -0.61 -20.89 13.43 -4.01 -0.05 -20.94 16 17 N -0.72 -12.07 5.08 -457.83 -2.33 -14.39 16 18 C 0.17 2.74 2.46 44.99 0.11 2.85 16 19 H 0.07 1.46 7.57 -2.39 -0.02 1.44 16 20 C -0.12 -1.82 5.35 30.59 0.16 -1.65 16 21 C -0.15 -1.38 5.64 30.60 0.17 -1.21 16 22 C 0.08 0.65 3.43 30.60 0.10 0.75 16 23 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 24 O -0.57 -5.80 11.87 -139.80 -1.66 -7.45 16 25 C 0.11 1.27 3.25 30.61 0.10 1.37 16 26 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 27 O -0.58 -7.35 13.21 -139.80 -1.85 -9.20 16 28 C -0.11 -1.47 4.90 30.61 0.15 -1.32 16 29 C -0.13 -3.94 9.97 22.39 0.22 -3.71 16 30 C -0.11 -4.17 9.69 22.25 0.22 -3.95 16 31 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 32 H 0.03 1.64 7.14 -2.39 -0.02 1.62 16 33 H 0.03 1.20 7.51 -2.39 -0.02 1.19 16 34 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 35 H 0.13 4.85 6.21 -2.91 -0.02 4.83 16 36 H 0.42 6.18 8.84 -92.71 -0.82 5.36 16 37 H 0.41 4.34 8.62 -92.70 -0.80 3.54 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.06 7.68 -2.39 -0.02 1.04 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.39 1.12 9.08 -74.05 -0.67 0.45 16 43 H 0.39 1.66 9.08 -74.06 -0.67 0.98 16 44 H 0.08 1.19 7.68 -2.39 -0.02 1.17 16 45 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 47 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -81.83 381.96 -3.26 -85.10 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -1.99 Total: 21.66 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 4.12 Total: -24.32 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -3.72 Total: -91.40 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -3.56 Total: -37.59 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Total: -81.83 -3.26 -85.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365082370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.447 kcal (2) G-P(sol) polarization free energy of solvation -81.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.73 seconds