Wall clock time and date at job start Wed Apr 1 2020 00:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86790 * 120.00360 * 2 1 4 4 H 1.48496 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47239 * 300.00149 * 3 2 1 6 6 H 1.48502 * 109.47372 * 59.99984 * 3 2 1 7 7 C 1.38656 * 119.99319 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99936 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00127 * 174.68365 * 9 7 2 11 11 C 1.38878 * 120.06930 * 173.78133 * 10 9 7 12 12 C 1.38108 * 119.92944 * 179.76118 * 11 10 9 13 13 C 1.38302 * 120.06849 * 0.48588 * 12 11 10 14 14 C 1.50696 * 119.92945 * 179.74554 * 13 12 11 15 15 N 1.46509 * 109.46915 * 270.02344 * 14 13 12 16 16 C 1.34781 * 119.99816 * 180.02562 * 15 14 13 17 17 O 1.21590 * 119.99831 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99819 * 179.97438 * 16 15 14 19 19 C 1.46499 * 119.99741 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.46908 * 180.02562 * 19 18 16 21 21 C 1.53004 * 109.47176 * 185.09501 * 20 19 18 22 22 C 1.52995 * 115.54847 * 295.09187 * 21 20 19 23 23 O 1.42895 * 109.47588 * 301.82408 * 22 21 20 24 24 C 1.53000 * 117.49678 * 149.41976 * 21 20 19 25 25 C 1.53005 * 117.49329 * 80.76341 * 21 20 19 26 26 C 1.38300 * 120.13669 * 359.76679 * 13 12 11 27 27 C 1.38103 * 120.07122 * 359.97438 * 26 13 12 28 28 H 0.97009 * 119.99824 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.03909 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.96416 * 180.23412 * 12 11 10 31 31 H 1.09001 * 109.47060 * 30.01929 * 14 13 12 32 32 H 1.09001 * 109.47473 * 150.02341 * 14 13 12 33 33 H 0.96997 * 119.99630 * 0.02562 * 15 14 13 34 34 H 0.97002 * 120.00081 * 0.02562 * 18 16 15 35 35 H 1.08998 * 109.46787 * 299.99358 * 19 18 16 36 36 H 1.08998 * 109.47630 * 60.00188 * 19 18 16 37 37 H 1.09007 * 109.47390 * 305.09696 * 20 19 18 38 38 H 1.09006 * 109.47434 * 65.09816 * 20 19 18 39 39 H 1.09001 * 109.47148 * 61.83304 * 22 21 20 40 40 H 1.09009 * 109.46573 * 181.82188 * 22 21 20 41 41 H 0.96696 * 114.00641 * 179.97438 * 23 22 21 42 42 H 1.09003 * 117.50190 * 0.02562 * 24 21 20 43 43 H 1.09006 * 117.49604 * 145.02116 * 24 21 20 44 44 H 1.09001 * 117.49180 * 214.97405 * 25 21 20 45 45 H 1.08990 * 117.50349 * 359.97438 * 25 21 20 46 46 H 1.08001 * 119.96152 * 179.97438 * 26 13 12 47 47 H 1.07995 * 120.02978 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7095 1.3462 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0087 -1.2009 -0.0005 8 1 3.0888 -1.2010 -0.0010 9 8 1.3345 -2.3685 -0.0016 10 6 2.0693 -3.5044 -0.1141 11 6 1.4563 -4.7446 0.0073 12 6 2.2058 -5.8984 -0.1127 13 6 3.5671 -5.8195 -0.3434 14 6 4.3829 -7.0805 -0.4680 15 7 4.8767 -7.4752 0.8537 16 6 5.6354 -8.5812 0.9869 17 8 5.9096 -9.2516 0.0103 18 7 6.0901 -8.9440 2.2026 19 6 6.9152 -10.1458 2.3473 20 6 7.2949 -10.3297 3.8180 21 6 8.2592 -11.5100 3.9521 22 6 7.6823 -12.8785 3.5845 23 8 6.5438 -13.1512 4.4039 24 6 9.2869 -11.4574 5.0843 25 6 9.7343 -11.2565 3.6343 26 6 4.1814 -4.5859 -0.4595 27 6 3.4365 -3.4285 -0.3459 28 1 -0.4850 0.8401 -0.0004 29 1 0.3940 -4.8068 0.1918 30 1 1.7289 -6.8632 -0.0221 31 1 3.7606 -7.8769 -0.8760 32 1 5.2278 -6.9024 -1.1333 33 1 4.6577 -6.9405 1.6328 34 1 5.8711 -8.4093 2.9818 35 1 6.3535 -11.0154 2.0061 36 1 7.8199 -10.0398 1.7487 37 1 7.7766 -9.4234 4.1850 38 1 6.3966 -10.5263 4.4034 39 1 7.3837 -12.8773 2.5362 40 1 8.4386 -13.6468 3.7459 41 1 6.1257 -14.0046 4.2250 42 1 9.2758 -10.5822 5.7340 43 1 9.5523 -12.3980 5.5672 44 1 10.2938 -12.0650 3.1638 45 1 10.0176 -10.2492 3.3293 46 1 5.2447 -4.5276 -0.6392 47 1 3.9169 -2.4655 -0.4363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365321789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:32 Heat of formation + Delta-G solvation = -65.373243 kcal Electronic energy + Delta-G solvation = -26939.218800 eV Core-core repulsion = 22895.356180 eV Total energy + Delta-G solvation = -4043.862620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.04548 -39.25331 -38.97571 -36.92296 -36.27000 -35.02021 -34.28364 -32.37712 -30.83011 -30.26059 -29.36950 -27.15796 -25.88447 -24.80309 -23.54864 -22.66903 -22.04314 -20.94348 -20.61076 -19.51938 -18.27248 -18.05444 -17.72127 -17.04056 -16.48585 -16.20879 -15.75809 -15.35591 -14.80847 -14.72043 -14.47466 -14.36921 -14.06339 -14.05044 -13.81003 -13.68672 -13.38907 -13.22692 -12.78898 -12.75628 -12.41996 -12.16929 -11.96237 -11.82653 -11.65458 -11.41885 -11.38889 -10.97771 -10.81748 -10.75377 -10.67970 -10.52025 -10.47239 -10.19149 -10.05991 -9.45209 -9.26952 -8.91705 -8.72176 -8.27793 -7.32891 -6.53481 -4.12144 2.03625 2.13560 2.84474 3.07959 3.09295 3.14833 3.17455 3.28580 3.83859 3.90016 4.17726 4.27802 4.36583 4.51016 4.59830 4.69255 4.88661 4.92329 5.02952 5.10102 5.15356 5.21351 5.23654 5.25621 5.28863 5.46192 5.46866 5.62984 5.67890 5.68105 5.80291 5.83644 5.84780 5.96462 6.13262 6.36433 6.40044 6.59299 6.63473 6.80945 6.91302 7.01016 7.16248 7.20272 7.28501 7.35159 7.72116 7.91344 8.07840 8.66214 8.92055 9.60627 10.64164 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.001646 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.010549 B =17010.179196 C =17500.121544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.196 4.196 12 C -0.054 4.054 13 C -0.213 4.213 14 C 0.198 3.802 15 N -0.738 5.738 16 C 0.701 3.299 17 O -0.598 6.598 18 N -0.751 5.751 19 C 0.144 3.856 20 C -0.090 4.090 21 C -0.123 4.123 22 C 0.111 3.889 23 O -0.568 6.568 24 C -0.165 4.165 25 C -0.167 4.167 26 C -0.050 4.050 27 C -0.237 4.237 28 H 0.271 0.729 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.395 0.605 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.380 0.620 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.916 -21.491 8.606 28.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.077 6.077 10 C 0.105 3.895 11 C -0.215 4.215 12 C -0.073 4.073 13 C -0.215 4.215 14 C 0.075 3.925 15 N -0.393 5.393 16 C 0.401 3.599 17 O -0.477 6.477 18 N -0.407 5.407 19 C 0.020 3.980 20 C -0.127 4.127 21 C -0.124 4.124 22 C 0.034 3.966 23 O -0.374 6.374 24 C -0.202 4.202 25 C -0.204 4.204 26 C -0.069 4.069 27 C -0.256 4.256 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.229 0.771 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.227 0.773 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 15.880 -21.297 7.928 27.723 hybrid contribution 0.174 0.829 0.455 0.961 sum 16.054 -20.468 8.383 27.331 Atomic orbital electron populations 1.70048 1.06003 1.27748 1.45528 1.25323 0.95869 0.98946 0.96384 0.85628 0.79148 0.80225 0.78330 1.19049 1.20066 1.20076 1.21397 0.91864 0.80749 1.52845 0.88910 1.83993 1.34422 1.11590 1.77645 1.19454 0.90404 0.87979 0.91613 1.20217 1.00073 0.89993 1.11226 1.20545 0.92904 0.96880 0.96926 1.19231 0.94072 0.93405 1.14786 1.19822 0.96379 0.93685 0.82609 1.45511 1.55092 1.27153 1.11580 1.16018 0.79050 0.81459 0.83405 1.90901 1.63680 1.55511 1.37631 1.45127 1.57177 1.30041 1.08355 1.21077 0.94400 0.86740 0.95815 1.21228 0.99401 0.96098 0.96015 1.21231 0.90621 0.95310 1.05247 1.21619 0.87624 0.93664 0.93741 1.86477 1.45482 1.42329 1.63078 1.23054 1.02288 1.03486 0.91396 1.23082 0.95052 1.03467 0.98796 1.20653 0.98310 0.91607 0.96357 1.21167 0.94315 0.98897 1.11237 0.91933 0.86386 0.86936 0.91761 0.91806 0.76913 0.77111 0.91838 0.91833 0.91186 0.90028 0.92785 0.93584 0.77303 0.88503 0.88641 0.88526 0.88057 0.87393 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.66 13.67 55.48 0.76 -23.90 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 7 C -0.39 -10.67 9.44 30.89 0.29 -10.37 16 8 H 0.09 2.33 5.30 -52.48 -0.28 2.05 16 9 O -0.17 -4.82 9.76 0.06 0.00 -4.82 16 10 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 11 C -0.20 -3.94 9.99 -39.39 -0.39 -4.34 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 13 C -0.21 -3.45 5.25 -104.58 -0.55 -3.99 16 14 C 0.20 2.85 5.80 -5.19 -0.03 2.82 16 15 N -0.74 -9.54 5.55 -66.41 -0.37 -9.90 16 16 C 0.70 9.77 8.57 -86.92 -0.74 9.03 16 17 O -0.60 -10.68 16.34 5.29 0.09 -10.60 16 18 N -0.75 -7.72 5.56 -65.23 -0.36 -8.08 16 19 C 0.14 1.36 5.41 -4.04 -0.02 1.33 16 20 C -0.09 -0.66 5.09 -26.73 -0.14 -0.79 16 21 C -0.12 -0.84 1.82 -154.51 -0.28 -1.12 16 22 C 0.11 0.71 6.63 37.16 0.25 0.95 16 23 O -0.57 -4.06 13.31 -35.23 -0.47 -4.53 16 24 C -0.17 -0.99 9.93 -26.69 -0.26 -1.26 16 25 C -0.17 -0.96 9.97 -26.69 -0.27 -1.23 16 26 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 27 C -0.24 -4.91 9.13 -39.39 -0.36 -5.27 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 33 H 0.40 4.47 8.48 -40.82 -0.35 4.13 16 34 H 0.40 3.08 8.49 -40.82 -0.35 2.73 16 35 H 0.06 0.67 7.39 -51.93 -0.38 0.29 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 38 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 39 H 0.05 0.34 7.38 -51.93 -0.38 -0.04 16 40 H 0.05 0.23 8.11 -51.92 -0.42 -0.19 16 41 H 0.38 1.12 9.12 45.56 0.42 1.54 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 47 H 0.13 2.67 5.72 -52.49 -0.30 2.37 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -33.70 398.97 -9.23 -42.93 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.23 Total: 10.25 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -3.63 Total: -12.36 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.03 Total: -41.89 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.38 Total: -19.94 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.70 -9.23 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365321789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.446 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds