Wall clock time and date at job start Wed Apr 1 2020 00:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86790 * 120.00360 * 2 1 4 4 H 1.48496 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47239 * 300.00149 * 3 2 1 6 6 H 1.48502 * 109.47372 * 59.99984 * 3 2 1 7 7 C 1.38656 * 119.99319 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99936 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00439 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00127 * 174.68365 * 9 7 2 11 11 C 1.38878 * 120.06930 * 173.78133 * 10 9 7 12 12 C 1.38108 * 119.92944 * 179.76118 * 11 10 9 13 13 C 1.38302 * 120.06849 * 0.48588 * 12 11 10 14 14 C 1.50696 * 119.92945 * 179.74554 * 13 12 11 15 15 N 1.46509 * 109.46915 * 270.02344 * 14 13 12 16 16 C 1.34781 * 119.99816 * 180.02562 * 15 14 13 17 17 O 1.21590 * 119.99831 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99819 * 179.97438 * 16 15 14 19 19 C 1.46499 * 119.99741 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.46908 * 180.02562 * 19 18 16 21 21 C 1.53004 * 109.47176 * 185.09501 * 20 19 18 22 22 C 1.52995 * 115.54847 * 295.09187 * 21 20 19 23 23 O 1.42895 * 109.47588 * 301.82408 * 22 21 20 24 24 C 1.53000 * 117.49678 * 149.41976 * 21 20 19 25 25 C 1.53005 * 117.49329 * 80.76341 * 21 20 19 26 26 C 1.38300 * 120.13669 * 359.76679 * 13 12 11 27 27 C 1.38103 * 120.07122 * 359.97438 * 26 13 12 28 28 H 0.97009 * 119.99824 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.03909 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.96416 * 180.23412 * 12 11 10 31 31 H 1.09001 * 109.47060 * 30.01929 * 14 13 12 32 32 H 1.09001 * 109.47473 * 150.02341 * 14 13 12 33 33 H 0.96997 * 119.99630 * 0.02562 * 15 14 13 34 34 H 0.97002 * 120.00081 * 0.02562 * 18 16 15 35 35 H 1.08998 * 109.46787 * 299.99358 * 19 18 16 36 36 H 1.08998 * 109.47630 * 60.00188 * 19 18 16 37 37 H 1.09007 * 109.47390 * 305.09696 * 20 19 18 38 38 H 1.09006 * 109.47434 * 65.09816 * 20 19 18 39 39 H 1.09001 * 109.47148 * 61.83304 * 22 21 20 40 40 H 1.09009 * 109.46573 * 181.82188 * 22 21 20 41 41 H 0.96696 * 114.00641 * 179.97438 * 23 22 21 42 42 H 1.09003 * 117.50190 * 0.02562 * 24 21 20 43 43 H 1.09006 * 117.49604 * 145.02116 * 24 21 20 44 44 H 1.09001 * 117.49180 * 214.97405 * 25 21 20 45 45 H 1.08990 * 117.50349 * 359.97438 * 25 21 20 46 46 H 1.08001 * 119.96152 * 179.97438 * 26 13 12 47 47 H 1.07995 * 120.02978 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7095 1.3462 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0087 -1.2009 -0.0005 8 1 3.0888 -1.2010 -0.0010 9 8 1.3345 -2.3685 -0.0016 10 6 2.0693 -3.5044 -0.1141 11 6 1.4563 -4.7446 0.0073 12 6 2.2058 -5.8984 -0.1127 13 6 3.5671 -5.8195 -0.3434 14 6 4.3829 -7.0805 -0.4680 15 7 4.8767 -7.4752 0.8537 16 6 5.6354 -8.5812 0.9869 17 8 5.9096 -9.2516 0.0103 18 7 6.0901 -8.9440 2.2026 19 6 6.9152 -10.1458 2.3473 20 6 7.2949 -10.3297 3.8180 21 6 8.2592 -11.5100 3.9521 22 6 7.6823 -12.8785 3.5845 23 8 6.5438 -13.1512 4.4039 24 6 9.2869 -11.4574 5.0843 25 6 9.7343 -11.2565 3.6343 26 6 4.1814 -4.5859 -0.4595 27 6 3.4365 -3.4285 -0.3459 28 1 -0.4850 0.8401 -0.0004 29 1 0.3940 -4.8068 0.1918 30 1 1.7289 -6.8632 -0.0221 31 1 3.7606 -7.8769 -0.8760 32 1 5.2278 -6.9024 -1.1333 33 1 4.6577 -6.9405 1.6328 34 1 5.8711 -8.4093 2.9818 35 1 6.3535 -11.0154 2.0061 36 1 7.8199 -10.0398 1.7487 37 1 7.7766 -9.4234 4.1850 38 1 6.3966 -10.5263 4.4034 39 1 7.3837 -12.8773 2.5362 40 1 8.4386 -13.6468 3.7459 41 1 6.1257 -14.0046 4.2250 42 1 9.2758 -10.5822 5.7340 43 1 9.5523 -12.3980 5.5672 44 1 10.2938 -12.0650 3.1638 45 1 10.0176 -10.2492 3.3293 46 1 5.2447 -4.5276 -0.6392 47 1 3.9169 -2.4655 -0.4363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365321789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:31 Heat of formation + Delta-G solvation = -90.503763 kcal Electronic energy + Delta-G solvation = -26940.308541 eV Core-core repulsion = 22895.356180 eV Total energy + Delta-G solvation = -4044.952361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.16385 -40.68848 -39.70578 -38.53255 -36.79933 -35.94253 -35.54417 -34.27429 -31.94306 -31.77616 -30.51782 -27.77566 -27.52876 -26.21667 -24.33655 -23.63601 -23.17664 -22.18081 -21.93057 -20.19241 -19.87093 -19.19729 -18.78555 -18.20718 -17.48979 -16.95178 -16.60500 -16.40414 -16.33625 -15.99348 -15.91247 -15.55512 -15.31181 -15.21448 -14.92563 -14.73185 -14.51679 -14.37390 -14.18544 -13.74747 -13.66916 -13.32045 -13.08903 -13.03377 -12.56877 -12.54242 -12.36699 -12.31789 -12.23794 -12.08594 -11.96447 -11.38126 -11.27631 -11.22262 -11.00581 -10.81359 -10.57200 -10.34452 -9.81596 -9.71215 -9.01723 -8.48571 -6.16531 0.53118 0.58178 1.36076 1.43042 1.53947 1.83403 2.16971 2.18520 2.69696 2.81168 3.13726 3.41152 3.45649 3.48208 3.73399 3.87941 3.90116 3.98817 4.04423 4.17524 4.18637 4.34031 4.36856 4.47847 4.57290 4.58005 4.59987 4.72927 4.77317 4.81115 4.82382 5.01283 5.04874 5.05720 5.13988 5.18300 5.25563 5.26071 5.27231 5.47936 5.52971 5.54565 5.69627 5.76284 6.01345 6.03709 6.16834 6.90833 6.96462 7.11545 7.60372 7.75942 8.74513 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.001646 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.010549 B =17010.179196 C =17500.121544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.103 0.897 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.204 4.204 12 C -0.043 4.043 13 C -0.181 4.181 14 C 0.204 3.796 15 N -0.731 5.731 16 C 0.699 3.301 17 O -0.638 6.638 18 N -0.736 5.736 19 C 0.148 3.852 20 C -0.078 4.078 21 C -0.140 4.140 22 C 0.110 3.890 23 O -0.588 6.588 24 C -0.164 4.164 25 C -0.162 4.162 26 C -0.045 4.045 27 C -0.243 4.243 28 H 0.273 0.727 29 H 0.116 0.884 30 H 0.147 0.853 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.408 0.592 34 H 0.410 0.590 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.395 0.605 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.139 0.861 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.551 -23.124 9.245 31.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.072 3.928 11 C -0.224 4.224 12 C -0.061 4.061 13 C -0.182 4.182 14 C 0.080 3.920 15 N -0.386 5.386 16 C 0.399 3.601 17 O -0.520 6.520 18 N -0.393 5.393 19 C 0.024 3.976 20 C -0.116 4.116 21 C -0.141 4.141 22 C 0.033 3.967 23 O -0.396 6.396 24 C -0.201 4.201 25 C -0.199 4.199 26 C -0.063 4.063 27 C -0.262 4.262 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.165 0.835 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.243 0.757 34 H 0.246 0.754 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.245 0.755 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.157 0.843 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 18.546 -22.986 8.612 30.765 hybrid contribution -0.514 0.918 0.262 1.084 sum 18.032 -22.068 8.874 29.848 Atomic orbital electron populations 1.70188 1.08026 1.28782 1.48652 1.26583 0.96835 1.02763 0.95834 0.84529 0.78310 0.74887 0.78507 1.17378 1.19498 1.19378 1.21858 0.92533 0.81341 1.53062 0.87932 1.83957 1.35997 1.12703 1.80891 1.20002 0.91672 0.87906 0.93270 1.20449 1.00510 0.90099 1.11308 1.20883 0.93096 0.97075 0.95082 1.19486 0.93899 0.93895 1.10912 1.19709 0.96281 0.92504 0.83472 1.45244 1.54884 1.27134 1.11377 1.16125 0.78967 0.81209 0.83796 1.90883 1.65141 1.56740 1.39225 1.45034 1.56289 1.30170 1.07779 1.21081 0.93621 0.85748 0.97141 1.21113 0.99375 0.96934 0.94181 1.21326 0.91049 0.95303 1.06406 1.21653 0.87783 0.93918 0.93394 1.86428 1.45933 1.43773 1.63455 1.23105 1.01593 1.03863 0.91490 1.23135 0.94236 1.03869 0.98663 1.20941 0.99630 0.90707 0.95053 1.21246 0.93581 0.99975 1.11448 0.91814 0.86640 0.83548 0.91272 0.91459 0.75682 0.75420 0.93116 0.92488 0.90145 0.90743 0.93177 0.92305 0.75498 0.88228 0.88213 0.87653 0.87967 0.84340 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.46 13.67 21.61 0.30 -55.16 16 2 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 3 Si 1.02 41.94 29.55 68.60 2.03 43.97 16 4 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.41 -23.35 9.44 67.92 0.64 -22.71 16 8 H 0.10 5.31 5.30 -2.91 -0.02 5.30 16 9 O -0.23 -13.42 9.76 -22.71 -0.22 -13.64 16 10 C 0.12 5.83 6.65 22.58 0.15 5.98 16 11 C -0.20 -8.20 9.99 22.39 0.22 -7.98 16 12 C -0.04 -1.33 9.69 22.25 0.22 -1.12 16 13 C -0.18 -5.23 5.25 -19.84 -0.10 -5.33 16 14 C 0.20 5.11 5.80 85.63 0.50 5.60 16 15 N -0.73 -16.34 5.55 -482.27 -2.68 -19.02 16 16 C 0.70 17.65 8.57 179.05 1.53 19.18 16 17 O -0.64 -21.49 16.34 -4.00 -0.07 -21.56 16 18 N -0.74 -13.34 5.56 -478.54 -2.66 -16.00 16 19 C 0.15 2.54 5.41 86.38 0.47 3.01 16 20 C -0.08 -1.00 5.09 30.59 0.16 -0.84 16 21 C -0.14 -1.66 1.82 -52.18 -0.09 -1.75 16 22 C 0.11 1.24 6.63 71.98 0.48 1.72 16 23 O -0.59 -7.60 13.31 -148.98 -1.98 -9.59 16 24 C -0.16 -1.64 9.93 30.62 0.30 -1.33 16 25 C -0.16 -1.54 9.97 30.62 0.31 -1.24 16 26 C -0.04 -1.43 9.69 22.25 0.22 -1.22 16 27 C -0.24 -10.01 9.13 22.39 0.20 -9.81 16 28 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 29 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 30 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 32 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 33 H 0.41 7.63 8.48 -92.71 -0.79 6.84 16 34 H 0.41 5.17 8.49 -92.71 -0.79 4.38 16 35 H 0.05 1.02 7.39 -2.39 -0.02 1.00 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 0.85 8.09 -2.38 -0.02 0.83 16 38 H 0.07 1.08 7.92 -2.38 -0.02 1.06 16 39 H 0.05 0.58 7.38 -2.39 -0.02 0.56 16 40 H 0.06 0.49 8.11 -2.38 -0.02 0.47 16 41 H 0.40 1.85 9.12 -74.06 -0.68 1.18 16 42 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 47 H 0.12 5.06 5.72 -2.91 -0.02 5.04 16 Total: -1.00 -76.69 398.97 -0.86 -77.55 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -1.23 Total: 32.06 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 5.66 Total: -18.61 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -5.04 Total: -90.17 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -2.27 Total: -44.78 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -76.69 -0.86 -77.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365321789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.958 kcal (2) G-P(sol) polarization free energy of solvation -76.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds