Wall clock time and date at job start Tue Mar 31 2020 22:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00037 * 2 1 4 4 H 1.48502 * 109.47118 * 240.00188 * 3 2 1 5 5 H 1.48499 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46948 * 120.00201 * 3 2 1 7 7 C 1.37877 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.50711 * 109.47368 * 180.02562 * 9 7 2 11 11 C 1.38279 * 119.92690 * 270.30773 * 10 9 7 12 12 C 1.38117 * 120.06630 * 180.29924 * 11 10 9 13 13 C 1.38866 * 119.93055 * 359.41620 * 12 11 10 14 14 N 1.39943 * 120.07180 * 180.30502 * 13 12 11 15 15 C 1.34768 * 120.00134 * 144.90987 * 14 13 12 16 16 O 1.21581 * 120.00166 * 4.61360 * 15 14 13 17 17 N 1.34776 * 120.00000 * 184.61561 * 15 14 13 18 18 C 1.46499 * 120.00131 * 179.97438 * 17 15 14 19 19 C 1.53777 * 113.61962 * 254.13731 * 18 17 15 20 20 C 1.53951 * 87.02575 * 220.05106 * 19 18 17 21 21 C 1.53001 * 113.53401 * 270.81520 * 20 19 18 22 22 O 1.42900 * 109.46775 * 277.48906 * 21 20 19 23 23 C 1.52994 * 113.74530 * 139.94069 * 20 19 18 24 24 O 1.42900 * 109.46859 * 82.40425 * 23 20 19 25 25 C 1.53779 * 113.61317 * 156.53232 * 18 17 15 26 26 C 1.38869 * 119.85623 * 0.27852 * 13 12 11 27 27 C 1.38110 * 119.93432 * 0.02562 * 26 13 12 28 28 H 0.96995 * 119.99803 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47162 * 60.00853 * 9 7 2 30 30 H 1.08997 * 109.47720 * 300.00509 * 9 7 2 31 31 H 1.07997 * 119.96755 * 0.02562 * 11 10 9 32 32 H 1.08005 * 120.03354 * 179.69201 * 12 11 10 33 33 H 0.97003 * 119.99183 * 324.90285 * 14 13 12 34 34 H 0.97009 * 119.99716 * 0.02562 * 17 15 14 35 35 H 1.08995 * 112.85000 * 25.33842 * 18 17 15 36 36 H 1.09004 * 113.61611 * 334.57466 * 19 18 17 37 37 H 1.09002 * 113.61462 * 105.46770 * 19 18 17 38 38 H 1.08998 * 109.47770 * 37.49175 * 21 20 19 39 39 H 1.09002 * 109.47032 * 157.49073 * 21 20 19 40 40 H 0.96696 * 114.00013 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.47248 * 202.40118 * 23 20 19 42 42 H 1.08999 * 109.47282 * 322.40850 * 23 20 19 43 43 H 0.96701 * 113.99997 * 179.97438 * 24 23 20 44 44 H 1.09007 * 113.61295 * 254.53299 * 25 18 17 45 45 H 1.09002 * 113.61527 * 25.35084 * 25 18 17 46 46 H 1.08001 * 120.03248 * 180.02562 * 26 13 12 47 47 H 1.07995 * 119.96881 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6447 -0.0005 11 6 2.6835 -4.1649 -1.1989 12 6 3.5762 -5.2188 -1.2023 13 6 4.0280 -5.7480 -0.0006 14 7 4.9374 -6.8116 -0.0006 15 6 5.8849 -6.8881 0.9547 16 8 5.8982 -6.0809 1.8638 17 7 6.8179 -7.8593 0.9023 18 6 7.8483 -7.9421 1.9404 19 6 9.2356 -7.4743 1.4702 20 6 9.8168 -8.6502 2.2761 21 6 10.1333 -8.2967 3.7307 22 8 11.4097 -7.6577 3.7985 23 6 10.9716 -9.3673 1.5740 24 8 12.1862 -8.6494 1.8007 25 6 8.4575 -9.3458 2.0930 26 6 3.5758 -5.2191 1.2012 27 6 2.6782 -4.1694 1.1979 28 1 -0.4849 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.3356 -3.7496 -2.1332 32 1 3.9259 -5.6279 -2.1387 33 1 4.8856 -7.4939 -0.6882 34 1 6.8076 -8.5031 0.1767 35 1 7.5344 -7.4973 2.8847 36 1 9.3859 -7.5657 0.3944 37 1 9.5206 -6.4957 1.8566 38 1 9.3684 -7.6223 4.1155 39 1 10.1503 -9.2068 4.3303 40 1 11.6761 -7.4053 4.6931 41 1 11.0672 -10.3777 1.9714 42 1 10.7723 -9.4152 0.5034 43 1 12.9623 -9.0480 1.3839 44 1 8.1151 -9.8761 2.9818 45 1 8.3932 -9.9504 1.1884 46 1 3.9256 -5.6282 2.1375 47 1 2.3265 -3.7574 2.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366848097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:40 Heat of formation + Delta-G solvation = -80.232038 kcal Electronic energy + Delta-G solvation = -27775.847863 eV Core-core repulsion = 23731.340917 eV Total energy + Delta-G solvation = -4044.506945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.95901 -39.92198 -38.20006 -36.56629 -36.23606 -34.77754 -33.77400 -32.85278 -30.38856 -30.20539 -28.53694 -26.47020 -26.32893 -26.20292 -23.56265 -22.38218 -22.12425 -20.99863 -20.16537 -19.09458 -18.40371 -17.79145 -17.41862 -17.05128 -16.28810 -16.16046 -15.75997 -15.49259 -14.99988 -14.81214 -14.71260 -14.29327 -14.17066 -13.95518 -13.66679 -13.05143 -12.98976 -12.84369 -12.77780 -12.56235 -12.38878 -11.98271 -11.91540 -11.47049 -11.40718 -11.19865 -11.02750 -10.76654 -10.73717 -10.59805 -10.33821 -10.18421 -10.13837 -10.06087 -9.71412 -9.45675 -9.26274 -9.16560 -8.36886 -8.22461 -7.31902 -5.98768 -4.02353 1.99509 2.13199 2.56781 3.16560 3.36909 3.40115 3.44714 3.53264 3.85115 3.98431 4.15602 4.42193 4.44432 4.52533 4.62116 4.69465 4.74722 4.95853 5.01171 5.13052 5.18498 5.24832 5.29424 5.35109 5.40282 5.47955 5.64667 5.67966 5.81453 5.85140 6.00414 6.10714 6.14097 6.26154 6.33479 6.61555 6.72758 6.99914 7.09371 7.22688 7.27551 7.42558 7.47845 7.56328 7.78213 7.89820 7.92612 7.97323 8.38315 8.53868 9.02942 9.61193 11.10708 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017802 B = 0.001986 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.509463 B =14093.333307 C =14981.137022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.044 4.044 11 C -0.109 4.109 12 C -0.145 4.145 13 C 0.120 3.880 14 N -0.682 5.682 15 C 0.701 3.299 16 O -0.570 6.570 17 N -0.736 5.736 18 C 0.143 3.857 19 C -0.134 4.134 20 C -0.081 4.081 21 C 0.102 3.898 22 O -0.541 6.541 23 C 0.099 3.901 24 O -0.540 6.540 25 C -0.131 4.131 26 C -0.116 4.116 27 C -0.109 4.109 28 H 0.262 0.738 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.400 0.600 34 H 0.395 0.605 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.043 0.957 40 H 0.369 0.631 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.366 0.634 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.129 0.871 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.095 -25.506 2.425 32.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.012 3.988 10 C -0.045 4.045 11 C -0.127 4.127 12 C -0.166 4.166 13 C 0.027 3.973 14 N -0.329 5.329 15 C 0.402 3.598 16 O -0.445 6.445 17 N -0.391 5.391 18 C 0.038 3.962 19 C -0.173 4.173 20 C -0.081 4.081 21 C 0.023 3.977 22 O -0.344 6.344 23 C 0.021 3.979 24 O -0.343 6.343 25 C -0.169 4.169 26 C -0.136 4.136 27 C -0.128 4.128 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.234 0.766 34 H 0.229 0.771 35 H 0.135 0.865 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.214 0.786 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.211 0.789 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.147 0.853 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 19.544 -24.356 2.969 31.369 hybrid contribution 0.829 -0.065 -0.527 0.984 sum 20.373 -24.421 2.442 31.897 Atomic orbital electron populations 1.69947 1.05997 1.26845 1.50658 1.25010 0.94889 0.99220 0.95258 0.86603 0.79527 0.82825 0.78776 1.20195 1.21275 1.20146 1.21047 0.93065 0.89912 1.50805 0.92515 1.18341 0.92556 0.89615 0.98323 1.20715 0.96545 0.95335 0.91902 1.20856 0.97745 0.95609 0.98521 1.20715 1.01654 0.98728 0.95458 1.17299 0.94016 0.91655 0.94329 1.42445 1.31824 1.27478 1.31112 1.15985 0.79220 0.81828 0.82807 1.90952 1.75947 1.42257 1.35380 1.45092 1.30937 1.33186 1.29844 1.22381 0.85598 0.95889 0.92371 1.23558 0.94607 0.98969 1.00206 1.21695 0.93097 0.97735 0.95607 1.21769 0.86220 0.95886 0.93777 1.86763 1.34901 1.80482 1.32273 1.21910 0.85114 0.93597 0.97270 1.86816 1.16598 1.53344 1.77556 1.23389 0.93512 0.96721 1.03281 1.21151 0.97111 0.98271 0.97102 1.21016 0.97373 0.95932 0.98463 0.92855 0.95348 0.95327 0.86063 0.86946 0.76571 0.77101 0.86495 0.89666 0.90284 0.93402 0.93897 0.78591 0.94185 0.93989 0.78908 0.90047 0.88854 0.85282 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.66 9.09 -34.44 -0.31 -14.97 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.05 1.27 5.10 -29.03 -0.15 1.12 16 10 C -0.04 -0.99 5.07 -104.59 -0.53 -1.52 16 11 C -0.11 -2.14 9.69 -39.61 -0.38 -2.52 16 12 C -0.15 -2.41 9.97 -39.39 -0.39 -2.81 16 13 C 0.12 2.02 6.30 -83.69 -0.53 1.49 16 14 N -0.68 -8.68 5.34 -14.23 -0.08 -8.76 16 15 C 0.70 9.60 8.41 -86.93 -0.73 8.87 16 16 O -0.57 -10.42 13.39 5.29 0.07 -10.35 16 17 N -0.74 -6.63 5.37 -57.89 -0.31 -6.94 16 18 C 0.14 1.24 3.86 -67.12 -0.26 0.98 16 19 C -0.13 -1.22 7.01 -25.83 -0.18 -1.40 16 20 C -0.08 -0.59 1.08 -153.61 -0.17 -0.75 16 21 C 0.10 0.77 6.39 37.16 0.24 1.01 16 22 O -0.54 -4.91 11.11 -58.79 -0.65 -5.57 16 23 C 0.10 0.66 6.52 37.15 0.24 0.90 16 24 O -0.54 -4.58 11.11 -58.79 -0.65 -5.23 16 25 C -0.13 -0.72 6.98 -25.92 -0.18 -0.90 16 26 C -0.12 -2.22 8.70 -39.39 -0.34 -2.56 16 27 C -0.11 -2.29 9.69 -39.61 -0.38 -2.68 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 32 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.40 3.45 8.84 -40.82 -0.36 3.09 16 34 H 0.40 2.22 8.73 -40.82 -0.36 1.86 16 35 H 0.12 1.25 7.01 -51.93 -0.36 0.88 16 36 H 0.08 0.74 7.98 -51.93 -0.41 0.32 16 37 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.05 0.37 7.34 -51.93 -0.38 -0.01 16 39 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.37 1.87 9.12 45.56 0.42 2.29 16 41 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.04 0.24 7.96 -51.93 -0.41 -0.18 16 43 H 0.37 1.56 9.12 45.56 0.42 1.98 16 44 H 0.08 0.39 8.10 -51.92 -0.42 -0.03 16 45 H 0.09 0.36 8.07 -51.93 -0.42 -0.06 16 46 H 0.13 2.48 6.22 -52.49 -0.33 2.15 16 47 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -37.23 389.06 -9.74 -46.97 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.54 Total: 7.17 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -4.16 Total: -14.17 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.35 Total: -41.79 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -1.24 Total: -21.15 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.23 -9.74 -46.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366848097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.258 kcal (2) G-P(sol) polarization free energy of solvation -37.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds