Wall clock time and date at job start Tue Mar 31 2020 22:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00037 * 2 1 4 4 H 1.48502 * 109.47118 * 240.00188 * 3 2 1 5 5 H 1.48499 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46948 * 120.00201 * 3 2 1 7 7 C 1.37877 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.50711 * 109.47368 * 180.02562 * 9 7 2 11 11 C 1.38279 * 119.92690 * 270.30773 * 10 9 7 12 12 C 1.38117 * 120.06630 * 180.29924 * 11 10 9 13 13 C 1.38866 * 119.93055 * 359.41620 * 12 11 10 14 14 N 1.39943 * 120.07180 * 180.30502 * 13 12 11 15 15 C 1.34768 * 120.00134 * 144.90987 * 14 13 12 16 16 O 1.21581 * 120.00166 * 4.61360 * 15 14 13 17 17 N 1.34776 * 120.00000 * 184.61561 * 15 14 13 18 18 C 1.46499 * 120.00131 * 179.97438 * 17 15 14 19 19 C 1.53777 * 113.61962 * 254.13731 * 18 17 15 20 20 C 1.53951 * 87.02575 * 220.05106 * 19 18 17 21 21 C 1.53001 * 113.53401 * 270.81520 * 20 19 18 22 22 O 1.42900 * 109.46775 * 277.48906 * 21 20 19 23 23 C 1.52994 * 113.74530 * 139.94069 * 20 19 18 24 24 O 1.42900 * 109.46859 * 82.40425 * 23 20 19 25 25 C 1.53779 * 113.61317 * 156.53232 * 18 17 15 26 26 C 1.38869 * 119.85623 * 0.27852 * 13 12 11 27 27 C 1.38110 * 119.93432 * 0.02562 * 26 13 12 28 28 H 0.96995 * 119.99803 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47162 * 60.00853 * 9 7 2 30 30 H 1.08997 * 109.47720 * 300.00509 * 9 7 2 31 31 H 1.07997 * 119.96755 * 0.02562 * 11 10 9 32 32 H 1.08005 * 120.03354 * 179.69201 * 12 11 10 33 33 H 0.97003 * 119.99183 * 324.90285 * 14 13 12 34 34 H 0.97009 * 119.99716 * 0.02562 * 17 15 14 35 35 H 1.08995 * 112.85000 * 25.33842 * 18 17 15 36 36 H 1.09004 * 113.61611 * 334.57466 * 19 18 17 37 37 H 1.09002 * 113.61462 * 105.46770 * 19 18 17 38 38 H 1.08998 * 109.47770 * 37.49175 * 21 20 19 39 39 H 1.09002 * 109.47032 * 157.49073 * 21 20 19 40 40 H 0.96696 * 114.00013 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.47248 * 202.40118 * 23 20 19 42 42 H 1.08999 * 109.47282 * 322.40850 * 23 20 19 43 43 H 0.96701 * 113.99997 * 179.97438 * 24 23 20 44 44 H 1.09007 * 113.61295 * 254.53299 * 25 18 17 45 45 H 1.09002 * 113.61527 * 25.35084 * 25 18 17 46 46 H 1.08001 * 120.03248 * 180.02562 * 26 13 12 47 47 H 1.07995 * 119.96881 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6447 -0.0005 11 6 2.6835 -4.1649 -1.1989 12 6 3.5762 -5.2188 -1.2023 13 6 4.0280 -5.7480 -0.0006 14 7 4.9374 -6.8116 -0.0006 15 6 5.8849 -6.8881 0.9547 16 8 5.8982 -6.0809 1.8638 17 7 6.8179 -7.8593 0.9023 18 6 7.8483 -7.9421 1.9404 19 6 9.2356 -7.4743 1.4702 20 6 9.8168 -8.6502 2.2761 21 6 10.1333 -8.2967 3.7307 22 8 11.4097 -7.6577 3.7985 23 6 10.9716 -9.3673 1.5740 24 8 12.1862 -8.6494 1.8007 25 6 8.4575 -9.3458 2.0930 26 6 3.5758 -5.2191 1.2012 27 6 2.6782 -4.1694 1.1979 28 1 -0.4849 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.3356 -3.7496 -2.1332 32 1 3.9259 -5.6279 -2.1387 33 1 4.8856 -7.4939 -0.6882 34 1 6.8076 -8.5031 0.1767 35 1 7.5344 -7.4973 2.8847 36 1 9.3859 -7.5657 0.3944 37 1 9.5206 -6.4957 1.8566 38 1 9.3684 -7.6223 4.1155 39 1 10.1503 -9.2068 4.3303 40 1 11.6761 -7.4053 4.6931 41 1 11.0672 -10.3777 1.9714 42 1 10.7723 -9.4152 0.5034 43 1 12.9623 -9.0480 1.3839 44 1 8.1151 -9.8761 2.9818 45 1 8.3932 -9.9504 1.1884 46 1 3.9256 -5.6282 2.1375 47 1 2.3265 -3.7574 2.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001366848097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:37 Heat of formation + Delta-G solvation = -109.276525 kcal Electronic energy + Delta-G solvation = -27777.107326 eV Core-core repulsion = 23731.340917 eV Total energy + Delta-G solvation = -4045.766409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -41.86728 -40.86348 -39.55498 -37.24187 -36.82373 -36.20599 -35.08544 -34.46666 -32.06924 -31.73513 -29.34946 -28.16642 -26.87943 -26.78096 -25.27556 -23.85391 -23.26583 -22.04555 -21.63363 -19.88494 -19.26104 -18.55095 -18.45966 -18.38283 -17.70358 -17.09188 -16.74980 -16.59070 -16.34889 -15.92346 -15.87077 -15.53739 -15.38537 -14.73889 -14.60395 -14.47743 -14.39092 -14.23446 -13.76208 -13.54948 -13.42530 -13.31035 -13.14738 -13.01530 -12.59859 -12.55406 -12.47271 -12.13311 -12.00807 -11.74659 -11.62298 -11.55582 -11.31804 -11.16167 -10.90531 -10.67123 -10.61887 -10.59664 -10.06073 -9.73771 -8.82629 -8.18196 -6.32679 0.50474 0.60117 1.38300 1.41313 1.49540 1.57196 2.05396 2.39831 3.02369 3.04483 3.10264 3.18250 3.33802 3.51456 3.79694 4.02468 4.07904 4.13792 4.19240 4.19656 4.40880 4.45175 4.55138 4.61616 4.62217 4.68486 4.69050 4.72567 4.74329 4.79536 4.87309 5.06591 5.12759 5.14928 5.20852 5.32876 5.34117 5.44624 5.52011 5.55184 5.64928 5.76742 5.99920 6.11107 6.14797 6.28438 6.79396 7.02001 7.02874 7.10470 7.35260 7.50933 8.88993 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017802 B = 0.001986 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.509463 B =14093.333307 C =14981.137022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.058 3.942 10 C -0.077 4.077 11 C -0.113 4.113 12 C -0.128 4.128 13 C 0.136 3.864 14 N -0.666 5.666 15 C 0.696 3.304 16 O -0.620 6.620 17 N -0.711 5.711 18 C 0.135 3.865 19 C -0.138 4.138 20 C -0.083 4.083 21 C 0.096 3.904 22 O -0.564 6.564 23 C 0.097 3.903 24 O -0.569 6.569 25 C -0.106 4.106 26 C -0.124 4.124 27 C -0.122 4.122 28 H 0.266 0.734 29 H 0.010 0.990 30 H 0.001 0.999 31 H 0.127 0.873 32 H 0.160 0.840 33 H 0.425 0.575 34 H 0.417 0.583 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.061 0.939 40 H 0.382 0.618 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.381 0.619 44 H 0.095 0.905 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.342 -28.142 0.833 35.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.078 4.078 11 C -0.132 4.132 12 C -0.148 4.148 13 C 0.042 3.958 14 N -0.315 5.315 15 C 0.397 3.603 16 O -0.499 6.499 17 N -0.367 5.367 18 C 0.029 3.971 19 C -0.177 4.177 20 C -0.084 4.084 21 C 0.018 3.982 22 O -0.369 6.369 23 C 0.019 3.981 24 O -0.374 6.374 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.141 4.141 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.019 0.981 31 H 0.145 0.855 32 H 0.178 0.822 33 H 0.264 0.736 34 H 0.255 0.745 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.229 0.771 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.229 0.771 44 H 0.114 0.886 45 H 0.140 0.860 46 H 0.144 0.856 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 21.831 -27.079 1.338 34.809 hybrid contribution 0.227 0.657 0.001 0.695 sum 22.058 -26.422 1.340 34.445 Atomic orbital electron populations 1.70063 1.07498 1.27971 1.51257 1.25904 0.95817 1.02973 0.94657 0.85533 0.78352 0.78324 0.79054 1.19124 1.20228 1.19801 1.21346 0.92920 0.91451 1.50973 0.93198 1.18081 0.92864 0.90974 0.95972 1.20414 0.97854 0.95733 0.93785 1.20968 0.98254 0.96498 0.97483 1.21012 0.99670 0.96945 0.97164 1.17350 0.93237 0.91713 0.93518 1.42209 1.30670 1.26982 1.31671 1.16223 0.79833 0.82113 0.82154 1.90938 1.77175 1.44430 1.37389 1.44887 1.29373 1.32025 1.30367 1.22432 0.84991 0.98484 0.91165 1.23562 0.95233 0.98079 1.00813 1.21762 0.94496 0.97091 0.95025 1.21889 0.85407 0.96307 0.94586 1.86722 1.35572 1.80823 1.33813 1.22011 0.84127 0.93912 0.98015 1.86771 1.17908 1.54550 1.78201 1.23318 0.90993 0.94780 1.05272 1.21143 0.96954 0.98051 0.98281 1.20928 0.98474 0.97051 0.97649 0.92536 0.97200 0.98097 0.85523 0.82249 0.73615 0.74522 0.89064 0.88864 0.93858 0.94473 0.92052 0.77072 0.92454 0.92649 0.77117 0.88634 0.85955 0.85631 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.96 45.97 29.54 68.60 2.03 48.00 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.53 -31.50 9.09 25.60 0.23 -31.27 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 9 C 0.06 3.22 5.10 29.10 0.15 3.37 16 10 C -0.08 -3.59 5.07 -19.84 -0.10 -3.69 16 11 C -0.11 -4.40 9.69 22.25 0.22 -4.18 16 12 C -0.13 -3.88 9.97 22.39 0.22 -3.66 16 13 C 0.14 4.32 6.30 38.15 0.24 4.56 16 14 N -0.67 -14.87 5.34 -317.19 -1.69 -16.57 16 15 C 0.70 17.74 8.41 179.06 1.51 19.25 16 16 O -0.62 -22.66 13.39 -3.97 -0.05 -22.71 16 17 N -0.71 -10.81 5.37 -455.32 -2.44 -13.25 16 18 C 0.13 2.11 3.86 45.52 0.18 2.29 16 19 C -0.14 -2.36 7.01 31.18 0.22 -2.14 16 20 C -0.08 -1.04 1.08 -51.60 -0.06 -1.09 16 21 C 0.10 1.37 6.39 71.98 0.46 1.83 16 22 O -0.56 -10.04 11.11 -126.45 -1.41 -11.45 16 23 C 0.10 1.01 6.52 71.98 0.47 1.48 16 24 O -0.57 -8.70 11.11 -126.45 -1.41 -10.10 16 25 C -0.11 -0.79 6.98 31.12 0.22 -0.58 16 26 C -0.12 -4.77 8.70 22.39 0.19 -4.58 16 27 C -0.12 -5.37 9.69 22.25 0.22 -5.15 16 28 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.01 0.56 8.09 -2.39 -0.02 0.54 16 30 H 0.00 0.04 8.08 -2.39 -0.02 0.02 16 31 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 32 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 33 H 0.42 5.32 8.84 -92.71 -0.82 4.50 16 34 H 0.42 2.81 8.73 -92.70 -0.81 2.00 16 35 H 0.09 1.96 7.01 -2.39 -0.02 1.95 16 36 H 0.09 1.41 7.98 -2.39 -0.02 1.39 16 37 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 38 H 0.04 0.59 7.34 -2.39 -0.02 0.57 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 40 H 0.38 3.86 9.12 -74.06 -0.68 3.18 16 41 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.06 0.42 7.96 -2.39 -0.02 0.41 16 43 H 0.38 2.61 9.12 -74.06 -0.68 1.94 16 44 H 0.10 0.54 8.10 -2.38 -0.02 0.52 16 45 H 0.12 0.27 8.07 -2.39 -0.02 0.25 16 46 H 0.13 4.93 6.22 -2.91 -0.02 4.91 16 47 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -85.00 389.06 -1.82 -86.81 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -1.95 Total: 18.94 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 4.82 Total: -22.81 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -3.85 Total: -86.68 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -2.86 Total: -44.26 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -85.00 -1.82 -86.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366848097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.466 kcal (2) G-P(sol) polarization free energy of solvation -84.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds