Wall clock time and date at job start Tue Mar 31 2020 23:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86800 * 120.00328 * 2 1 4 4 H 1.48494 * 109.47562 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47003 * 300.00673 * 3 2 1 6 6 H 1.48501 * 109.46864 * 59.99658 * 3 2 1 7 7 C 1.39898 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00089 * 194.34170 * 7 2 1 9 9 C 1.41160 * 119.99705 * 14.34446 * 7 2 1 10 10 C 1.40875 * 120.16150 * 205.62204 * 9 7 2 11 11 C 1.36372 * 119.82576 * 180.02562 * 10 9 7 12 12 C 1.39478 * 120.17368 * 359.97438 * 11 10 9 13 13 N 1.39243 * 119.83504 * 180.02562 * 12 11 10 14 14 C 1.34769 * 120.00019 * 32.85092 * 13 12 11 15 15 O 1.21586 * 120.00292 * 4.99111 * 14 13 12 16 16 N 1.34779 * 120.00230 * 184.99135 * 14 13 12 17 17 C 1.46497 * 120.00290 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.47419 * 325.00140 * 17 16 14 19 19 C 1.53002 * 109.47077 * 85.00016 * 17 16 14 20 20 O 1.42902 * 109.46959 * 64.21657 * 19 17 16 21 21 C 1.53002 * 109.47125 * 205.00088 * 17 16 14 22 22 H 1.09003 * 109.57244 * 296.99122 * 21 17 16 23 23 C 1.53179 * 109.52097 * 176.83636 * 21 17 16 24 24 C 1.53178 * 109.03195 * 183.11502 * 23 21 17 25 25 C 1.53085 * 109.16655 * 56.97941 * 24 23 21 26 26 O 1.42899 * 109.41700 * 302.39183 * 25 24 23 27 27 C 1.42897 * 114.09906 * 61.15251 * 26 25 24 28 28 C 1.39484 * 120.32898 * 0.29158 * 12 11 10 29 29 C 1.36379 * 120.16686 * 359.44823 * 28 12 11 30 30 H 0.97004 * 120.00343 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.08653 * 359.97438 * 10 9 7 32 32 H 1.08000 * 119.91068 * 179.97438 * 11 10 9 33 33 H 0.97002 * 119.99753 * 212.85204 * 13 12 11 34 34 H 0.97000 * 119.99359 * 359.97438 * 16 14 13 35 35 H 1.08999 * 109.46899 * 184.21321 * 19 17 16 36 36 H 1.08999 * 109.47009 * 304.21433 * 19 17 16 37 37 H 0.96704 * 113.99877 * 180.02562 * 20 19 17 38 38 H 1.08994 * 109.54342 * 63.24778 * 23 21 17 39 39 H 1.08997 * 109.54463 * 302.97716 * 23 21 17 40 40 H 1.09005 * 109.52162 * 176.88655 * 24 23 21 41 41 H 1.08997 * 109.52315 * 297.00884 * 24 23 21 42 42 H 1.08998 * 109.48203 * 62.37342 * 25 24 23 43 43 H 1.09000 * 109.48091 * 182.39403 * 25 24 23 44 44 H 1.08999 * 109.47963 * 58.82886 * 27 26 25 45 45 H 1.09005 * 109.48108 * 178.85874 * 27 26 25 46 46 H 1.08001 * 119.91434 * 179.70674 * 28 12 11 47 47 H 1.08006 * 120.08085 * 180.30193 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2124 6 1 1.8840 2.3964 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0629 -1.2262 0.2311 9 6 1.3354 -2.4148 -0.3040 10 6 1.8213 -3.6414 0.1899 11 6 1.1663 -4.7998 -0.1078 12 6 0.0177 -4.7723 -0.8987 13 7 -0.6459 -5.9592 -1.1980 14 6 -0.6602 -6.9672 -0.3036 15 8 -0.1727 -6.8088 0.7989 16 7 -1.2149 -8.1511 -0.6312 17 6 -1.2300 -9.2470 0.3409 18 1 -0.3182 -9.2162 0.9374 19 6 -2.4450 -9.0980 1.2587 20 8 -3.6421 -9.2365 0.4905 21 6 -1.3105 -10.5838 -0.3989 22 1 -2.2472 -10.6383 -0.9537 23 6 -1.2468 -11.7329 0.6120 24 6 -1.2497 -13.0647 -0.1448 25 6 -0.0746 -13.0880 -1.1257 26 8 -0.1780 -11.9761 -2.0173 27 6 -0.1331 -10.7029 -1.3700 28 6 -0.4663 -3.5623 -1.3960 29 6 0.1751 -2.3951 -1.1023 30 1 -0.4851 0.8400 0.0004 31 1 2.7108 -3.6644 0.8021 32 1 1.5378 -5.7410 0.2697 33 1 -1.0979 -6.0606 -2.0503 34 1 -1.6042 -8.2774 -1.5106 35 1 -2.4159 -9.8694 2.0282 36 1 -2.4268 -8.1148 1.7289 37 1 -4.4540 -9.1527 1.0090 38 1 -2.1131 -11.6866 1.2718 39 1 -0.3334 -11.6502 1.2009 40 1 -1.1488 -13.8867 0.5641 41 1 -2.1855 -13.1698 -0.6935 42 1 0.8622 -13.0241 -0.5722 43 1 -0.0965 -14.0158 -1.6972 44 1 0.8030 -10.6078 -0.8197 45 1 -0.1972 -9.9124 -2.1178 46 1 -1.3535 -3.5493 -2.0116 47 1 -0.2037 -1.4584 -1.4840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413484132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:50 Heat of formation + Delta-G solvation = -110.768352 kcal Electronic energy + Delta-G solvation = -28725.051797 eV Core-core repulsion = 24679.220698 eV Total energy + Delta-G solvation = -4045.831099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.41672 -39.43606 -37.75200 -36.96011 -35.07882 -34.32480 -33.56282 -32.87688 -31.33764 -29.53411 -28.94325 -28.15166 -25.56180 -24.75977 -23.90921 -22.21530 -21.28808 -20.63820 -20.48995 -19.87420 -18.03829 -17.47943 -17.21700 -16.84678 -16.32643 -16.27387 -15.49408 -15.23183 -15.11972 -14.83360 -14.55019 -14.33406 -13.91961 -13.83644 -13.80772 -13.11032 -12.89764 -12.76250 -12.64040 -12.56973 -12.06140 -11.86785 -11.73177 -11.49078 -11.30838 -11.26458 -11.11875 -10.98937 -10.94111 -10.70962 -10.55316 -10.15092 -10.00384 -9.72643 -9.54859 -9.47437 -9.17160 -8.89865 -8.84943 -7.49031 -6.89127 -6.67306 -4.25434 2.69410 3.00442 3.09518 3.12602 3.15400 3.18926 3.59625 3.72363 3.96646 4.15464 4.34761 4.49083 4.51225 4.59249 4.69566 4.70812 4.87030 5.02230 5.13554 5.17831 5.24993 5.31431 5.42255 5.45148 5.55554 5.61383 5.69707 5.74019 5.77057 5.87058 6.09009 6.24350 6.46900 6.62443 6.82698 6.86595 6.93110 7.08881 7.17198 7.32714 7.43061 7.45192 7.66414 7.91964 8.02316 8.10545 8.33398 8.53641 8.65724 8.94013 8.96464 9.15203 10.23956 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.027381 B = 0.002172 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.349808 B =12890.245178 C =13288.019704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.457 4.457 8 H 0.077 0.923 9 C 0.101 3.899 10 C -0.213 4.213 11 C -0.079 4.079 12 C 0.016 3.984 13 N -0.665 5.665 14 C 0.695 3.305 15 O -0.581 6.581 16 N -0.742 5.742 17 C 0.178 3.822 18 H 0.100 0.900 19 C 0.061 3.939 20 O -0.568 6.568 21 C -0.125 4.125 22 H 0.095 0.905 23 C -0.115 4.115 24 C -0.154 4.154 25 C 0.058 3.942 26 O -0.382 6.382 27 C 0.066 3.934 28 C -0.118 4.118 29 C -0.150 4.150 30 H 0.279 0.721 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.391 0.609 34 H 0.395 0.605 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.376 0.624 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.950 -21.460 -1.449 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.487 4.487 8 H 0.095 0.905 9 C 0.098 3.902 10 C -0.233 4.233 11 C -0.100 4.100 12 C -0.076 4.076 13 N -0.311 5.311 14 C 0.396 3.604 15 O -0.459 6.459 16 N -0.398 5.398 17 C 0.072 3.928 18 H 0.117 0.883 19 C -0.018 4.018 20 O -0.373 6.373 21 C -0.144 4.144 22 H 0.113 0.887 23 C -0.153 4.153 24 C -0.191 4.191 25 C -0.019 4.019 26 O -0.300 6.300 27 C -0.011 4.011 28 C -0.139 4.139 29 C -0.170 4.170 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.224 0.776 34 H 0.228 0.772 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.223 0.777 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.110 0.890 44 H 0.070 0.930 45 H 0.113 0.887 46 H 0.107 0.893 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.254 -21.255 -1.098 21.923 hybrid contribution -0.654 0.831 0.158 1.069 sum -5.907 -20.425 -0.940 21.283 Atomic orbital electron populations 1.69839 1.07472 1.28884 1.36226 1.25913 0.94787 1.01285 0.92477 0.86246 0.80907 0.80995 0.78457 1.18459 1.19805 1.20071 1.19572 0.96932 0.90865 1.41330 0.90459 1.17669 0.91649 0.92175 0.88664 1.20663 1.03181 0.92780 1.06711 1.20273 0.93522 0.97750 0.98421 1.16987 0.96631 0.83192 1.10828 1.42121 1.56634 1.13974 1.18345 1.16015 0.79571 0.80332 0.84494 1.90910 1.52042 1.81718 1.21208 1.45075 1.64918 1.11838 1.18009 1.20752 0.97458 0.84629 0.89954 0.88262 1.22697 0.85242 1.00472 0.93379 1.86441 1.15728 1.95904 1.39236 1.21977 1.01133 0.93710 0.97603 0.88697 1.21620 1.02676 0.93520 0.97473 1.22168 1.00105 0.97849 0.99027 1.22588 0.96979 0.89877 0.92468 1.87947 1.94402 1.14020 1.33674 1.22632 0.96700 0.85464 0.96271 1.20210 0.99140 0.91749 1.02761 1.20949 0.98807 0.96248 1.01029 0.91052 0.88792 0.87865 0.77573 0.77174 0.93042 0.92583 0.77748 0.90967 0.91577 0.90846 0.90942 0.93197 0.89025 0.92966 0.88664 0.89260 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.85 10.82 55.55 0.60 -20.25 16 2 C 0.07 1.83 5.20 -17.34 -0.09 1.74 16 3 Si 0.91 18.87 29.58 -169.99 -5.03 13.84 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.46 -12.29 9.05 -37.85 -0.34 -12.63 16 8 H 0.08 2.00 7.88 -52.49 -0.41 1.59 16 9 C 0.10 2.75 5.58 -106.80 -0.60 2.15 16 10 C -0.21 -5.50 9.74 -39.26 -0.38 -5.88 16 11 C -0.08 -1.94 8.57 -39.79 -0.34 -2.28 16 12 C 0.02 0.37 6.30 -83.57 -0.53 -0.16 16 13 N -0.67 -11.97 5.32 -14.10 -0.07 -12.05 16 14 C 0.70 12.32 8.26 -86.92 -0.72 11.60 16 15 O -0.58 -12.69 13.61 5.29 0.07 -12.62 16 16 N -0.74 -9.49 4.33 -58.68 -0.25 -9.74 16 17 C 0.18 2.01 1.95 -67.93 -0.13 1.87 16 18 H 0.10 1.26 7.58 -51.93 -0.39 0.87 16 19 C 0.06 0.65 6.45 37.16 0.24 0.89 16 20 O -0.57 -5.57 12.69 -35.23 -0.45 -6.02 16 21 C -0.12 -1.15 1.87 -90.48 -0.17 -1.32 16 22 H 0.09 0.96 7.48 -51.93 -0.39 0.57 16 23 C -0.11 -0.88 4.94 -26.55 -0.13 -1.01 16 24 C -0.15 -1.05 6.14 -26.60 -0.16 -1.22 16 25 C 0.06 0.45 6.84 37.20 0.25 0.70 16 26 O -0.38 -4.05 10.77 -35.23 -0.38 -4.43 16 27 C 0.07 0.66 5.89 37.20 0.22 0.88 16 28 C -0.12 -2.75 9.89 -39.79 -0.39 -3.14 16 29 C -0.15 -3.92 8.63 -39.26 -0.34 -4.26 16 30 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 31 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.10 2.49 6.34 -52.49 -0.33 2.16 16 33 H 0.39 5.61 8.82 -40.82 -0.36 5.25 16 34 H 0.39 4.21 8.24 -40.82 -0.34 3.87 16 35 H 0.05 0.44 6.81 -51.93 -0.35 0.09 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.38 2.28 9.12 45.56 0.42 2.70 16 38 H 0.07 0.52 6.79 -51.93 -0.35 0.16 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.95 7.35 -51.93 -0.38 0.57 16 46 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 47 H 0.12 3.30 6.10 -52.48 -0.32 2.98 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -32.34 377.66 -9.59 -41.93 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -6.16 Total: 15.69 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -3.61 Total: -12.05 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.27 Total: -42.03 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.75 Total: -23.07 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.34 -9.59 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413484132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.839 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds