Wall clock time and date at job start Tue Mar 31 2020 23:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86800 * 120.00328 * 2 1 4 4 H 1.48494 * 109.47562 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47003 * 300.00673 * 3 2 1 6 6 H 1.48501 * 109.46864 * 59.99658 * 3 2 1 7 7 C 1.39898 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00089 * 194.34170 * 7 2 1 9 9 C 1.41160 * 119.99705 * 14.34446 * 7 2 1 10 10 C 1.40875 * 120.16150 * 205.62204 * 9 7 2 11 11 C 1.36372 * 119.82576 * 180.02562 * 10 9 7 12 12 C 1.39478 * 120.17368 * 359.97438 * 11 10 9 13 13 N 1.39243 * 119.83504 * 180.02562 * 12 11 10 14 14 C 1.34769 * 120.00019 * 32.85092 * 13 12 11 15 15 O 1.21586 * 120.00292 * 4.99111 * 14 13 12 16 16 N 1.34779 * 120.00230 * 184.99135 * 14 13 12 17 17 C 1.46497 * 120.00290 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.47419 * 325.00140 * 17 16 14 19 19 C 1.53002 * 109.47077 * 85.00016 * 17 16 14 20 20 O 1.42902 * 109.46959 * 64.21657 * 19 17 16 21 21 C 1.53002 * 109.47125 * 205.00088 * 17 16 14 22 22 H 1.09003 * 109.57244 * 296.99122 * 21 17 16 23 23 C 1.53179 * 109.52097 * 176.83636 * 21 17 16 24 24 C 1.53178 * 109.03195 * 183.11502 * 23 21 17 25 25 C 1.53085 * 109.16655 * 56.97941 * 24 23 21 26 26 O 1.42899 * 109.41700 * 302.39183 * 25 24 23 27 27 C 1.42897 * 114.09906 * 61.15251 * 26 25 24 28 28 C 1.39484 * 120.32898 * 0.29158 * 12 11 10 29 29 C 1.36379 * 120.16686 * 359.44823 * 28 12 11 30 30 H 0.97004 * 120.00343 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.08653 * 359.97438 * 10 9 7 32 32 H 1.08000 * 119.91068 * 179.97438 * 11 10 9 33 33 H 0.97002 * 119.99753 * 212.85204 * 13 12 11 34 34 H 0.97000 * 119.99359 * 359.97438 * 16 14 13 35 35 H 1.08999 * 109.46899 * 184.21321 * 19 17 16 36 36 H 1.08999 * 109.47009 * 304.21433 * 19 17 16 37 37 H 0.96704 * 113.99877 * 180.02562 * 20 19 17 38 38 H 1.08994 * 109.54342 * 63.24778 * 23 21 17 39 39 H 1.08997 * 109.54463 * 302.97716 * 23 21 17 40 40 H 1.09005 * 109.52162 * 176.88655 * 24 23 21 41 41 H 1.08997 * 109.52315 * 297.00884 * 24 23 21 42 42 H 1.08998 * 109.48203 * 62.37342 * 25 24 23 43 43 H 1.09000 * 109.48091 * 182.39403 * 25 24 23 44 44 H 1.08999 * 109.47963 * 58.82886 * 27 26 25 45 45 H 1.09005 * 109.48108 * 178.85874 * 27 26 25 46 46 H 1.08001 * 119.91434 * 179.70674 * 28 12 11 47 47 H 1.08006 * 120.08085 * 180.30193 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2124 6 1 1.8840 2.3964 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0629 -1.2262 0.2311 9 6 1.3354 -2.4148 -0.3040 10 6 1.8213 -3.6414 0.1899 11 6 1.1663 -4.7998 -0.1078 12 6 0.0177 -4.7723 -0.8987 13 7 -0.6459 -5.9592 -1.1980 14 6 -0.6602 -6.9672 -0.3036 15 8 -0.1727 -6.8088 0.7989 16 7 -1.2149 -8.1511 -0.6312 17 6 -1.2300 -9.2470 0.3409 18 1 -0.3182 -9.2162 0.9374 19 6 -2.4450 -9.0980 1.2587 20 8 -3.6421 -9.2365 0.4905 21 6 -1.3105 -10.5838 -0.3989 22 1 -2.2472 -10.6383 -0.9537 23 6 -1.2468 -11.7329 0.6120 24 6 -1.2497 -13.0647 -0.1448 25 6 -0.0746 -13.0880 -1.1257 26 8 -0.1780 -11.9761 -2.0173 27 6 -0.1331 -10.7029 -1.3700 28 6 -0.4663 -3.5623 -1.3960 29 6 0.1751 -2.3951 -1.1023 30 1 -0.4851 0.8400 0.0004 31 1 2.7108 -3.6644 0.8021 32 1 1.5378 -5.7410 0.2697 33 1 -1.0979 -6.0606 -2.0503 34 1 -1.6042 -8.2774 -1.5106 35 1 -2.4159 -9.8694 2.0282 36 1 -2.4268 -8.1148 1.7289 37 1 -4.4540 -9.1527 1.0090 38 1 -2.1131 -11.6866 1.2718 39 1 -0.3334 -11.6502 1.2009 40 1 -1.1488 -13.8867 0.5641 41 1 -2.1855 -13.1698 -0.6935 42 1 0.8622 -13.0241 -0.5722 43 1 -0.0965 -14.0158 -1.6972 44 1 0.8030 -10.6078 -0.8197 45 1 -0.1972 -9.9124 -2.1178 46 1 -1.3535 -3.5493 -2.0116 47 1 -0.2037 -1.4584 -1.4840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413484132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:47 Heat of formation + Delta-G solvation = -134.269939 kcal Electronic energy + Delta-G solvation = -28726.070902 eV Core-core repulsion = 24679.220698 eV Total energy + Delta-G solvation = -4046.850205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.63001 -40.50391 -39.25948 -38.11671 -36.25660 -35.84586 -34.82146 -34.24428 -32.27388 -31.43907 -30.62824 -29.22267 -26.83200 -26.02401 -24.69742 -23.66604 -22.88878 -22.10662 -21.56187 -21.06085 -19.45378 -19.11085 -18.37680 -18.16816 -17.27045 -17.08242 -17.00892 -16.61515 -16.22524 -15.78800 -15.75504 -15.59349 -15.26541 -14.97380 -14.83832 -14.58255 -14.47283 -13.98033 -13.69252 -13.61826 -13.53138 -13.39221 -13.20309 -12.84761 -12.76941 -12.57923 -12.46702 -12.11133 -12.01033 -11.79806 -11.66279 -11.42689 -11.28754 -11.19514 -11.05056 -10.89405 -10.67340 -10.45892 -10.02929 -9.44547 -8.77797 -8.55510 -6.25246 0.86946 1.16497 1.40104 1.47830 1.55455 1.75226 2.20804 2.24420 2.79196 2.89684 3.31545 3.39794 3.60177 3.75587 3.78383 3.86721 4.01492 4.18324 4.29345 4.36142 4.40332 4.41021 4.51225 4.54752 4.59742 4.67062 4.76912 4.81190 4.93138 4.94694 5.03229 5.11106 5.13541 5.17641 5.21068 5.32566 5.39495 5.46816 5.54079 5.67201 5.81945 6.05967 6.12991 6.23102 6.27067 6.40444 6.68563 6.84626 6.96018 7.02649 7.15933 7.67519 8.37084 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.027381 B = 0.002172 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.349808 B =12890.245178 C =13288.019704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.031 3.969 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.268 1.268 7 C -0.494 4.494 8 H 0.073 0.927 9 C 0.070 3.930 10 C -0.230 4.230 11 C -0.089 4.089 12 C 0.033 3.967 13 N -0.659 5.659 14 C 0.695 3.305 15 O -0.623 6.623 16 N -0.720 5.720 17 C 0.174 3.826 18 H 0.084 0.916 19 C 0.069 3.931 20 O -0.575 6.575 21 C -0.109 4.109 22 H 0.092 0.908 23 C -0.116 4.116 24 C -0.148 4.148 25 C 0.049 3.951 26 O -0.401 6.401 27 C 0.066 3.934 28 C -0.117 4.117 29 C -0.168 4.168 30 H 0.288 0.712 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.412 0.588 34 H 0.409 0.591 35 H 0.077 0.923 36 H 0.025 0.975 37 H 0.394 0.606 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.106 0.894 44 H 0.046 0.954 45 H 0.091 0.909 46 H 0.122 0.878 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.119 -22.880 -1.920 24.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.183 4.183 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.193 1.193 7 C -0.524 4.524 8 H 0.091 0.909 9 C 0.067 3.933 10 C -0.250 4.250 11 C -0.110 4.110 12 C -0.061 4.061 13 N -0.307 5.307 14 C 0.396 3.604 15 O -0.503 6.503 16 N -0.376 5.376 17 C 0.068 3.932 18 H 0.102 0.898 19 C -0.010 4.010 20 O -0.382 6.382 21 C -0.128 4.128 22 H 0.110 0.890 23 C -0.153 4.153 24 C -0.186 4.186 25 C -0.027 4.027 26 O -0.320 6.320 27 C -0.011 4.011 28 C -0.137 4.137 29 C -0.188 4.188 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.249 0.751 34 H 0.245 0.755 35 H 0.095 0.905 36 H 0.043 0.957 37 H 0.243 0.757 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.124 0.876 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.140 0.860 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.480 -22.748 -1.606 23.708 hybrid contribution -0.380 1.053 0.299 1.159 sum -6.860 -21.695 -1.306 22.791 Atomic orbital electron populations 1.69881 1.08843 1.30356 1.36474 1.26763 0.95619 1.04476 0.91393 0.85109 0.79245 0.76082 0.78932 1.18349 1.18607 1.19258 1.19788 0.97055 0.92080 1.43475 0.90868 1.17992 0.92731 0.92835 0.89722 1.20794 1.03689 0.93220 1.07314 1.20371 0.94312 0.97217 0.99070 1.17005 0.95674 0.84710 1.08688 1.41916 1.56481 1.12756 1.19523 1.16142 0.79343 0.81169 0.83739 1.90890 1.53817 1.82587 1.23041 1.44913 1.63334 1.10436 1.18937 1.20923 0.97426 0.84917 0.89888 0.89771 1.22522 0.85349 0.99655 0.93520 1.86395 1.16251 1.95787 1.39808 1.21829 1.00530 0.92911 0.97551 0.88965 1.21659 1.03249 0.93215 0.97225 1.22137 0.99472 0.97930 0.99021 1.22819 0.97667 0.89513 0.92748 1.87922 1.94524 1.14623 1.34893 1.22602 0.96729 0.85578 0.96222 1.20453 0.99695 0.90970 1.02608 1.20957 0.99209 0.96920 1.01730 0.90169 0.88828 0.87850 0.75130 0.75521 0.90457 0.95669 0.75698 0.89994 0.91391 0.88839 0.91131 0.92846 0.87597 0.93588 0.89048 0.86041 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.98 10.82 21.82 0.24 -43.74 16 2 C 0.03 1.61 5.20 85.24 0.44 2.05 16 3 Si 0.99 38.95 29.58 68.60 2.03 40.98 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 6 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.49 -27.51 9.05 23.39 0.21 -27.30 16 8 H 0.07 3.96 7.88 -2.91 -0.02 3.94 16 9 C 0.07 3.93 5.58 -21.28 -0.12 3.81 16 10 C -0.23 -12.32 9.74 22.48 0.22 -12.10 16 11 C -0.09 -4.44 8.57 22.13 0.19 -4.25 16 12 C 0.03 1.50 6.30 38.56 0.24 1.74 16 13 N -0.66 -22.86 5.32 -316.79 -1.68 -24.55 16 14 C 0.70 24.13 8.26 179.06 1.48 25.61 16 15 O -0.62 -27.35 13.61 -3.99 -0.05 -27.40 16 16 N -0.72 -17.47 4.33 -457.82 -1.98 -19.45 16 17 C 0.17 3.70 1.95 44.99 0.09 3.79 16 18 H 0.08 2.10 7.58 -2.39 -0.02 2.09 16 19 C 0.07 1.35 6.45 71.98 0.46 1.82 16 20 O -0.57 -9.90 12.69 -148.98 -1.89 -11.79 16 21 C -0.11 -1.80 1.87 -10.70 -0.02 -1.82 16 22 H 0.09 1.64 7.48 -2.39 -0.02 1.62 16 23 C -0.12 -1.49 4.94 30.71 0.15 -1.33 16 24 C -0.15 -1.63 6.14 30.68 0.19 -1.44 16 25 C 0.05 0.66 6.84 72.01 0.49 1.15 16 26 O -0.40 -7.92 10.77 -148.98 -1.60 -9.52 16 27 C 0.07 1.23 5.89 72.01 0.42 1.65 16 28 C -0.12 -5.38 9.89 22.14 0.22 -5.16 16 29 C -0.17 -8.94 8.63 22.48 0.19 -8.75 16 30 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 31 H 0.09 4.83 8.06 -2.91 -0.02 4.81 16 32 H 0.10 5.10 6.34 -2.91 -0.02 5.08 16 33 H 0.41 10.86 8.82 -92.71 -0.82 10.04 16 34 H 0.41 7.87 8.24 -92.71 -0.76 7.10 16 35 H 0.08 1.13 6.81 -2.39 -0.02 1.12 16 36 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.39 3.79 9.12 -74.05 -0.68 3.11 16 38 H 0.08 0.92 6.79 -2.39 -0.02 0.90 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.09 1.72 7.35 -2.38 -0.02 1.70 16 46 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 47 H 0.11 6.18 6.10 -2.91 -0.02 6.16 16 Total: -1.00 -71.73 377.66 -1.31 -73.04 By element: Atomic # 1 Polarization: 44.20 SS G_CDS: -1.23 Total: 42.97 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 4.87 Total: -20.53 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -3.43 Total: -87.74 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -3.55 Total: -48.72 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -71.73 -1.31 -73.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413484132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.229 kcal (2) G-P(sol) polarization free energy of solvation -71.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds