Wall clock time and date at job start Tue Mar 31 2020 23:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86793 * 120.00219 * 2 1 4 4 H 1.48507 * 109.47049 * 269.99649 * 3 2 1 5 5 H 1.48499 * 109.47240 * 29.99284 * 3 2 1 6 6 H 1.48497 * 109.47521 * 149.99793 * 3 2 1 7 7 C 1.39896 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99839 * 196.82702 * 7 2 1 9 9 C 1.41164 * 120.00212 * 16.82035 * 7 2 1 10 10 C 1.40865 * 120.16388 * 205.35293 * 9 7 2 11 11 C 1.36373 * 119.82601 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.16987 * 359.97438 * 11 10 9 13 13 N 1.39241 * 119.83447 * 180.02562 * 12 11 10 14 14 C 1.34768 * 120.00060 * 145.59579 * 13 12 11 15 15 O 1.21578 * 120.00143 * 354.86351 * 14 13 12 16 16 N 1.34780 * 119.99975 * 174.85424 * 14 13 12 17 17 C 1.46498 * 120.00010 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.47377 * 35.00323 * 17 16 14 19 19 C 1.52997 * 109.47319 * 275.00585 * 17 16 14 20 20 O 1.42900 * 109.47283 * 294.99854 * 19 17 16 21 21 C 1.53000 * 109.47109 * 155.00476 * 17 16 14 22 22 H 1.08998 * 109.52443 * 60.13050 * 21 17 16 23 23 C 1.53177 * 109.52265 * 299.99989 * 21 17 16 24 24 C 1.53174 * 109.03728 * 183.11632 * 23 21 17 25 25 C 1.53083 * 109.16555 * 56.97942 * 24 23 21 26 26 O 1.42904 * 109.41881 * 302.39323 * 25 24 23 27 27 C 1.42903 * 114.09387 * 61.15420 * 26 25 24 28 28 C 1.39475 * 120.33269 * 0.29567 * 12 11 10 29 29 C 1.36376 * 120.16669 * 359.44449 * 28 12 11 30 30 H 0.96993 * 119.99963 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.08468 * 0.02562 * 10 9 7 32 32 H 1.07997 * 119.91366 * 180.02562 * 11 10 9 33 33 H 0.97008 * 119.99782 * 325.60604 * 13 12 11 34 34 H 0.97000 * 120.00269 * 0.02562 * 16 14 13 35 35 H 1.09000 * 109.47568 * 175.00184 * 19 17 16 36 36 H 1.09001 * 109.47389 * 55.00206 * 19 17 16 37 37 H 0.96695 * 114.00441 * 179.97438 * 20 19 17 38 38 H 1.09001 * 109.54153 * 302.98227 * 23 21 17 39 39 H 1.08997 * 109.54360 * 63.24312 * 23 21 17 40 40 H 1.08999 * 109.52254 * 176.89013 * 24 23 21 41 41 H 1.09004 * 109.52169 * 297.07362 * 24 23 21 42 42 H 1.08998 * 109.48218 * 62.37442 * 25 24 23 43 43 H 1.09002 * 109.48455 * 182.39624 * 25 24 23 44 44 H 1.09009 * 109.47805 * 178.86065 * 27 26 25 45 45 H 1.09004 * 109.48202 * 58.83028 * 27 26 25 46 46 H 1.07999 * 119.91915 * 179.70204 * 28 12 11 47 47 H 1.08009 * 120.08505 * 180.29647 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 2.4905 2.0463 -1.4001 5 1 1.4403 2.6527 0.6999 6 1 3.5404 1.4401 0.7001 7 6 2.0083 -1.2116 0.0005 8 1 3.0536 -1.2315 0.2713 9 6 1.3477 -2.4081 -0.3527 10 6 1.8186 -3.6453 0.1289 11 6 1.1755 -4.7970 -0.2171 12 6 0.0540 -4.7520 -1.0451 13 7 -0.5976 -5.9322 -1.3936 14 6 -1.9357 -5.9413 -1.5535 15 8 -2.5846 -4.9441 -1.3031 16 7 -2.5546 -7.0558 -1.9911 17 6 -4.0091 -7.0654 -2.1654 18 1 -4.3406 -6.0851 -2.5077 19 6 -4.6807 -7.3933 -0.8304 20 8 -4.3381 -8.7243 -0.4390 21 6 -4.3915 -8.1237 -3.2021 22 1 -4.0625 -9.1048 -2.8596 23 6 -3.7198 -7.7965 -4.5393 24 6 -4.1714 -8.8173 -5.5882 25 6 -5.6990 -8.7962 -5.6850 26 8 -6.2603 -9.0777 -4.4013 27 6 -5.9107 -8.1294 -3.3911 28 6 -0.4148 -3.5314 -1.5305 29 6 0.2147 -2.3708 -1.1888 30 1 -0.4850 0.8400 -0.0004 31 1 2.6866 -3.6816 0.7705 32 1 1.5351 -5.7463 0.1517 33 1 -0.0883 -6.7480 -1.5211 34 1 -2.0370 -7.8515 -2.1906 35 1 -5.7624 -7.3135 -0.9384 36 1 -4.3389 -6.6915 -0.0696 37 1 -4.7296 -9.0004 0.4010 38 1 -4.0090 -6.7948 -4.8572 39 1 -2.6369 -7.8457 -4.4251 40 1 -3.7415 -8.5595 -6.5561 41 1 -3.8387 -9.8129 -5.2945 42 1 -6.0286 -7.8121 -6.0179 43 1 -6.0285 -9.5508 -6.3993 44 1 -6.3927 -8.4036 -2.4526 45 1 -6.2431 -7.1364 -3.6940 46 1 -1.2809 -3.5047 -2.1751 47 1 -0.1523 -1.4258 -1.5615 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413484139.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:01 Heat of formation + Delta-G solvation = -110.928757 kcal Electronic energy + Delta-G solvation = -28810.528321 eV Core-core repulsion = 24764.690266 eV Total energy + Delta-G solvation = -4045.838055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.39198 -39.43118 -37.73866 -36.93111 -35.15893 -34.33200 -33.25631 -32.85505 -31.67193 -29.44985 -28.99068 -28.00829 -25.37941 -24.76485 -24.25418 -21.94110 -21.24829 -20.77533 -20.45793 -19.82908 -18.03793 -17.44074 -17.27671 -16.91051 -16.32141 -16.21821 -15.45732 -15.09294 -15.08031 -14.90367 -14.46533 -14.31642 -14.01701 -13.87471 -13.77485 -13.06266 -12.94462 -12.71394 -12.53991 -12.43568 -12.16488 -12.02114 -11.77091 -11.46862 -11.45981 -11.19934 -11.11030 -10.90544 -10.74273 -10.58848 -10.48570 -10.12069 -9.94147 -9.85351 -9.73967 -9.49312 -9.22565 -8.85157 -8.66499 -7.47908 -6.94128 -6.68571 -4.24701 2.71074 3.02167 3.09876 3.11312 3.13362 3.19595 3.58583 3.74398 3.96649 4.16745 4.36963 4.48857 4.57402 4.63503 4.69704 4.76298 4.89266 5.02955 5.06970 5.17989 5.24293 5.38398 5.42191 5.49383 5.55914 5.67714 5.73962 5.76293 5.79255 5.91802 6.12739 6.19237 6.41390 6.65159 6.86567 6.87070 6.91743 7.09185 7.15676 7.33751 7.40686 7.46640 7.65834 7.90723 8.05066 8.09903 8.31026 8.54604 8.67640 8.93211 8.97368 9.17467 10.24236 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.002293 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.627285 B =12207.408879 C =12483.516589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.077 0.923 9 C 0.104 3.896 10 C -0.214 4.214 11 C -0.108 4.108 12 C 0.016 3.984 13 N -0.667 5.667 14 C 0.694 3.306 15 O -0.578 6.578 16 N -0.739 5.739 17 C 0.178 3.822 18 H 0.100 0.900 19 C 0.058 3.942 20 O -0.568 6.568 21 C -0.124 4.124 22 H 0.094 0.906 23 C -0.118 4.118 24 C -0.155 4.155 25 C 0.058 3.942 26 O -0.381 6.381 27 C 0.070 3.930 28 C -0.086 4.086 29 C -0.154 4.154 30 H 0.280 0.720 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.390 0.610 34 H 0.394 0.606 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.376 0.624 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.052 0.948 46 H 0.101 0.899 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.076 -16.394 -7.828 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.101 3.899 10 C -0.234 4.234 11 C -0.128 4.128 12 C -0.076 4.076 13 N -0.313 5.313 14 C 0.395 3.605 15 O -0.455 6.455 16 N -0.395 5.395 17 C 0.072 3.928 18 H 0.117 0.883 19 C -0.021 4.021 20 O -0.373 6.373 21 C -0.144 4.144 22 H 0.112 0.888 23 C -0.156 4.156 24 C -0.193 4.193 25 C -0.019 4.019 26 O -0.299 6.299 27 C -0.008 4.008 28 C -0.106 4.106 29 C -0.174 4.174 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.223 0.777 34 H 0.227 0.773 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.223 0.777 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.110 0.890 44 H 0.115 0.885 45 H 0.070 0.930 46 H 0.119 0.881 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.681 -15.422 -8.130 20.446 hybrid contribution 0.701 0.239 0.509 0.899 sum -9.980 -15.183 -7.621 19.703 Atomic orbital electron populations 1.69867 1.07495 1.29156 1.35112 1.25926 0.94734 1.01288 0.92461 0.86315 0.80422 0.80712 0.79250 1.19328 1.20375 1.18678 1.19528 0.97720 0.91173 1.40630 0.90459 1.17657 0.91314 0.92065 0.88861 1.20536 1.03797 0.92513 1.06594 1.20025 0.97165 0.97176 0.98466 1.16966 0.98794 0.84424 1.07465 1.42105 1.04823 1.11803 1.72573 1.16023 0.82235 0.83343 0.78872 1.90938 1.64625 1.33142 1.56794 1.45006 1.07118 1.14280 1.73115 1.20726 0.80035 0.99434 0.92622 0.88250 1.22750 0.97793 0.84123 0.97438 1.86442 1.76433 1.30753 1.43668 1.21966 0.96860 1.00632 0.94899 0.88773 1.21643 1.00981 0.99041 0.93909 1.22188 0.96724 1.00474 0.99900 1.22600 0.92776 1.01093 0.85412 1.87947 1.72205 1.51000 1.18757 1.22600 0.93457 0.92800 0.91903 1.20419 0.98842 0.91635 0.99718 1.20986 0.98927 0.96649 1.00806 0.90880 0.88689 0.89317 0.77732 0.77297 0.93031 0.92479 0.77703 0.91597 0.91083 0.90834 0.91036 0.93157 0.89010 0.88530 0.92983 0.88132 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.13 10.94 55.55 0.61 -20.53 16 2 C 0.07 1.89 5.15 -17.33 -0.09 1.80 16 3 Si 0.91 18.94 29.59 -169.99 -5.03 13.91 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.36 9.04 -37.85 -0.34 -12.70 16 8 H 0.08 1.98 7.90 -52.48 -0.41 1.56 16 9 C 0.10 2.81 5.57 -106.80 -0.59 2.22 16 10 C -0.21 -5.27 9.74 -39.26 -0.38 -5.65 16 11 C -0.11 -2.41 9.90 -39.79 -0.39 -2.80 16 12 C 0.02 0.36 6.27 -83.57 -0.52 -0.16 16 13 N -0.67 -12.00 5.31 -14.10 -0.07 -12.07 16 14 C 0.69 12.52 8.25 -86.92 -0.72 11.80 16 15 O -0.58 -13.02 13.74 5.30 0.07 -12.95 16 16 N -0.74 -9.58 4.39 -58.68 -0.26 -9.84 16 17 C 0.18 2.06 1.95 -67.93 -0.13 1.92 16 18 H 0.10 1.31 7.58 -51.93 -0.39 0.92 16 19 C 0.06 0.63 6.35 37.16 0.24 0.86 16 20 O -0.57 -5.60 12.73 -35.23 -0.45 -6.05 16 21 C -0.12 -1.17 1.82 -90.48 -0.17 -1.33 16 22 H 0.09 0.96 7.56 -51.93 -0.39 0.57 16 23 C -0.12 -1.07 5.10 -26.55 -0.14 -1.20 16 24 C -0.16 -1.20 6.14 -26.60 -0.16 -1.36 16 25 C 0.06 0.46 6.84 37.20 0.25 0.71 16 26 O -0.38 -3.86 10.77 -35.23 -0.38 -4.24 16 27 C 0.07 0.63 5.71 37.21 0.21 0.84 16 28 C -0.09 -2.17 8.57 -39.79 -0.34 -2.51 16 29 C -0.15 -4.17 8.63 -39.26 -0.34 -4.51 16 30 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 31 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 32 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.39 5.51 8.83 -40.82 -0.36 5.15 16 34 H 0.39 4.22 8.42 -40.82 -0.34 3.88 16 35 H 0.05 0.44 6.78 -51.93 -0.35 0.09 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.38 2.30 9.12 45.56 0.42 2.71 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.66 7.56 -51.93 -0.39 0.27 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.81 6.70 -51.92 -0.35 0.46 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.10 2.55 6.48 -52.49 -0.34 2.21 16 47 H 0.12 3.35 6.18 -52.48 -0.32 3.02 16 LS Contribution 378.32 15.07 5.70 5.70 Total: -1.00 -32.65 378.32 -9.61 -42.26 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -6.19 Total: 15.87 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -3.62 Total: -12.06 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.28 Total: -42.44 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.75 Total: -23.24 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.65 -9.61 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413484139.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.670 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds