Wall clock time and date at job start Tue Mar 31 2020 23:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86793 * 120.00219 * 2 1 4 4 H 1.48507 * 109.47049 * 269.99649 * 3 2 1 5 5 H 1.48499 * 109.47240 * 29.99284 * 3 2 1 6 6 H 1.48497 * 109.47521 * 149.99793 * 3 2 1 7 7 C 1.39896 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99839 * 196.82702 * 7 2 1 9 9 C 1.41164 * 120.00212 * 16.82035 * 7 2 1 10 10 C 1.40865 * 120.16388 * 205.35293 * 9 7 2 11 11 C 1.36373 * 119.82601 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.16987 * 359.97438 * 11 10 9 13 13 N 1.39241 * 119.83447 * 180.02562 * 12 11 10 14 14 C 1.34768 * 120.00060 * 145.59579 * 13 12 11 15 15 O 1.21578 * 120.00143 * 354.86351 * 14 13 12 16 16 N 1.34780 * 119.99975 * 174.85424 * 14 13 12 17 17 C 1.46498 * 120.00010 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.47377 * 35.00323 * 17 16 14 19 19 C 1.52997 * 109.47319 * 275.00585 * 17 16 14 20 20 O 1.42900 * 109.47283 * 294.99854 * 19 17 16 21 21 C 1.53000 * 109.47109 * 155.00476 * 17 16 14 22 22 H 1.08998 * 109.52443 * 60.13050 * 21 17 16 23 23 C 1.53177 * 109.52265 * 299.99989 * 21 17 16 24 24 C 1.53174 * 109.03728 * 183.11632 * 23 21 17 25 25 C 1.53083 * 109.16555 * 56.97942 * 24 23 21 26 26 O 1.42904 * 109.41881 * 302.39323 * 25 24 23 27 27 C 1.42903 * 114.09387 * 61.15420 * 26 25 24 28 28 C 1.39475 * 120.33269 * 0.29567 * 12 11 10 29 29 C 1.36376 * 120.16669 * 359.44449 * 28 12 11 30 30 H 0.96993 * 119.99963 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.08468 * 0.02562 * 10 9 7 32 32 H 1.07997 * 119.91366 * 180.02562 * 11 10 9 33 33 H 0.97008 * 119.99782 * 325.60604 * 13 12 11 34 34 H 0.97000 * 120.00269 * 0.02562 * 16 14 13 35 35 H 1.09000 * 109.47568 * 175.00184 * 19 17 16 36 36 H 1.09001 * 109.47389 * 55.00206 * 19 17 16 37 37 H 0.96695 * 114.00441 * 179.97438 * 20 19 17 38 38 H 1.09001 * 109.54153 * 302.98227 * 23 21 17 39 39 H 1.08997 * 109.54360 * 63.24312 * 23 21 17 40 40 H 1.08999 * 109.52254 * 176.89013 * 24 23 21 41 41 H 1.09004 * 109.52169 * 297.07362 * 24 23 21 42 42 H 1.08998 * 109.48218 * 62.37442 * 25 24 23 43 43 H 1.09002 * 109.48455 * 182.39624 * 25 24 23 44 44 H 1.09009 * 109.47805 * 178.86065 * 27 26 25 45 45 H 1.09004 * 109.48202 * 58.83028 * 27 26 25 46 46 H 1.07999 * 119.91915 * 179.70204 * 28 12 11 47 47 H 1.08009 * 120.08505 * 180.29647 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 2.4905 2.0463 -1.4001 5 1 1.4403 2.6527 0.6999 6 1 3.5404 1.4401 0.7001 7 6 2.0083 -1.2116 0.0005 8 1 3.0536 -1.2315 0.2713 9 6 1.3477 -2.4081 -0.3527 10 6 1.8186 -3.6453 0.1289 11 6 1.1755 -4.7970 -0.2171 12 6 0.0540 -4.7520 -1.0451 13 7 -0.5976 -5.9322 -1.3936 14 6 -1.9357 -5.9413 -1.5535 15 8 -2.5846 -4.9441 -1.3031 16 7 -2.5546 -7.0558 -1.9911 17 6 -4.0091 -7.0654 -2.1654 18 1 -4.3406 -6.0851 -2.5077 19 6 -4.6807 -7.3933 -0.8304 20 8 -4.3381 -8.7243 -0.4390 21 6 -4.3915 -8.1237 -3.2021 22 1 -4.0625 -9.1048 -2.8596 23 6 -3.7198 -7.7965 -4.5393 24 6 -4.1714 -8.8173 -5.5882 25 6 -5.6990 -8.7962 -5.6850 26 8 -6.2603 -9.0777 -4.4013 27 6 -5.9107 -8.1294 -3.3911 28 6 -0.4148 -3.5314 -1.5305 29 6 0.2147 -2.3708 -1.1888 30 1 -0.4850 0.8400 -0.0004 31 1 2.6866 -3.6816 0.7705 32 1 1.5351 -5.7463 0.1517 33 1 -0.0883 -6.7480 -1.5211 34 1 -2.0370 -7.8515 -2.1906 35 1 -5.7624 -7.3135 -0.9384 36 1 -4.3389 -6.6915 -0.0696 37 1 -4.7296 -9.0004 0.4010 38 1 -4.0090 -6.7948 -4.8572 39 1 -2.6369 -7.8457 -4.4251 40 1 -3.7415 -8.5595 -6.5561 41 1 -3.8387 -9.8129 -5.2945 42 1 -6.0286 -7.8121 -6.0179 43 1 -6.0285 -9.5508 -6.3993 44 1 -6.3927 -8.4036 -2.4526 45 1 -6.2431 -7.1364 -3.6940 46 1 -1.2809 -3.5047 -2.1751 47 1 -0.1523 -1.4258 -1.5615 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413484139.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:59 Heat of formation + Delta-G solvation = -134.996897 kcal Electronic energy + Delta-G solvation = -28811.571994 eV Core-core repulsion = 24764.690266 eV Total energy + Delta-G solvation = -4046.881728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.61796 -40.50960 -39.25943 -38.08521 -36.28743 -35.92733 -34.77516 -34.00134 -32.63172 -31.38632 -30.71089 -29.01675 -26.82741 -25.83829 -25.13268 -23.41504 -23.01879 -21.99785 -21.54119 -21.11049 -19.42379 -19.18596 -18.40960 -18.17024 -17.35564 -17.09444 -16.96730 -16.45289 -16.19659 -15.75328 -15.71984 -15.54393 -15.38546 -14.96785 -14.92684 -14.67172 -14.47033 -13.94542 -13.71689 -13.69055 -13.43682 -13.31930 -13.20859 -12.95771 -12.79783 -12.64341 -12.31175 -12.15051 -11.98699 -11.72604 -11.71473 -11.50865 -11.29131 -11.27567 -11.08514 -10.88214 -10.51957 -10.43416 -10.06589 -9.43407 -8.81505 -8.58136 -6.24440 0.88189 1.15812 1.38593 1.48823 1.52901 1.75558 2.20372 2.23611 2.79470 2.91448 3.32427 3.38716 3.59240 3.74798 3.76661 3.87927 4.04462 4.17995 4.25496 4.28916 4.39613 4.44587 4.47717 4.53268 4.59541 4.68288 4.72939 4.82901 4.94072 4.97966 5.02861 5.09072 5.11655 5.17824 5.20279 5.31736 5.36643 5.45932 5.54279 5.67880 5.80516 6.10700 6.14467 6.21167 6.24731 6.38356 6.70552 6.84964 6.95134 7.03951 7.17504 7.69621 8.36363 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.002293 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.627285 B =12207.408879 C =12483.516589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.029 3.971 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.495 4.495 8 H 0.081 0.919 9 C 0.071 3.929 10 C -0.221 4.221 11 C -0.103 4.103 12 C 0.031 3.969 13 N -0.659 5.659 14 C 0.694 3.306 15 O -0.625 6.625 16 N -0.716 5.716 17 C 0.174 3.826 18 H 0.081 0.919 19 C 0.065 3.935 20 O -0.573 6.573 21 C -0.108 4.108 22 H 0.093 0.907 23 C -0.120 4.120 24 C -0.150 4.150 25 C 0.052 3.948 26 O -0.396 6.396 27 C 0.069 3.931 28 C -0.098 4.098 29 C -0.178 4.178 30 H 0.286 0.714 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.413 0.587 34 H 0.409 0.591 35 H 0.077 0.923 36 H 0.026 0.974 37 H 0.394 0.606 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.054 0.946 46 H 0.091 0.909 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.780 -18.485 -8.098 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.185 4.185 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.524 4.524 8 H 0.099 0.901 9 C 0.068 3.932 10 C -0.241 4.241 11 C -0.123 4.123 12 C -0.063 4.063 13 N -0.307 5.307 14 C 0.395 3.605 15 O -0.506 6.506 16 N -0.372 5.372 17 C 0.068 3.932 18 H 0.099 0.901 19 C -0.014 4.014 20 O -0.381 6.381 21 C -0.128 4.128 22 H 0.112 0.888 23 C -0.158 4.158 24 C -0.187 4.187 25 C -0.024 4.024 26 O -0.315 6.315 27 C -0.008 4.008 28 C -0.119 4.119 29 C -0.198 4.198 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.150 0.850 33 H 0.250 0.750 34 H 0.245 0.755 35 H 0.095 0.905 36 H 0.044 0.956 37 H 0.244 0.756 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.072 0.928 46 H 0.109 0.891 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.389 -17.616 -8.412 22.114 hybrid contribution 0.504 0.683 0.560 1.017 sum -9.885 -16.934 -7.851 21.121 Atomic orbital electron populations 1.69951 1.09219 1.30386 1.36192 1.26854 0.95445 1.04851 0.91364 0.85156 0.79075 0.75710 0.79453 1.18767 1.19580 1.17739 1.19806 0.98099 0.92214 1.42318 0.90074 1.18000 0.91878 0.93600 0.89703 1.20817 1.04348 0.92438 1.06546 1.20371 0.96286 0.98318 0.97336 1.17002 0.98413 0.85034 1.05826 1.41875 1.05062 1.11312 1.72432 1.16177 0.82010 0.83795 0.78559 1.90921 1.65605 1.35316 1.58718 1.44807 1.07884 1.13245 1.71232 1.20865 0.78852 0.99446 0.94035 0.90135 1.22564 0.99014 0.84013 0.95791 1.86392 1.76913 1.29734 1.45062 1.21816 0.97354 0.99391 0.94199 0.88835 1.21662 1.00823 0.99089 0.94234 1.22154 0.96632 0.99961 0.99969 1.22778 0.92842 1.01923 0.84906 1.87930 1.72572 1.51378 1.19570 1.22631 0.92937 0.92943 0.92295 1.20437 0.98673 0.92568 1.00217 1.20880 1.00150 0.96454 1.02297 0.90378 0.87187 0.85015 0.75028 0.75488 0.90548 0.95578 0.75619 0.92548 0.91285 0.89599 0.90848 0.92849 0.87405 0.87733 0.92750 0.89128 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.26 10.94 21.82 0.24 -46.02 16 2 C 0.03 1.51 5.15 85.24 0.44 1.95 16 3 Si 0.99 39.45 29.59 68.60 2.03 41.48 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 6 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 7 C -0.49 -27.28 9.04 23.39 0.21 -27.07 16 8 H 0.08 4.23 7.90 -2.91 -0.02 4.21 16 9 C 0.07 3.95 5.57 -21.27 -0.12 3.83 16 10 C -0.22 -10.82 9.74 22.48 0.22 -10.60 16 11 C -0.10 -4.41 9.90 22.14 0.22 -4.19 16 12 C 0.03 1.40 6.27 38.56 0.24 1.64 16 13 N -0.66 -22.65 5.31 -316.80 -1.68 -24.34 16 14 C 0.69 24.62 8.25 179.06 1.48 26.10 16 15 O -0.63 -28.77 13.74 -3.96 -0.05 -28.82 16 16 N -0.72 -17.65 4.39 -457.83 -2.01 -19.66 16 17 C 0.17 3.86 1.95 44.99 0.09 3.95 16 18 H 0.08 2.15 7.58 -2.39 -0.02 2.13 16 19 C 0.07 1.34 6.35 71.98 0.46 1.80 16 20 O -0.57 -10.04 12.73 -148.98 -1.90 -11.93 16 21 C -0.11 -1.86 1.82 -10.70 -0.02 -1.88 16 22 H 0.09 1.68 7.56 -2.39 -0.02 1.67 16 23 C -0.12 -2.00 5.10 30.71 0.16 -1.85 16 24 C -0.15 -1.99 6.14 30.68 0.19 -1.80 16 25 C 0.05 0.72 6.84 72.01 0.49 1.21 16 26 O -0.40 -7.26 10.77 -148.98 -1.60 -8.87 16 27 C 0.07 1.13 5.71 72.01 0.41 1.54 16 28 C -0.10 -5.13 8.57 22.13 0.19 -4.94 16 29 C -0.18 -10.10 8.63 22.48 0.19 -9.90 16 30 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 31 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 32 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 33 H 0.41 10.43 8.83 -92.70 -0.82 9.61 16 34 H 0.41 7.79 8.42 -92.71 -0.78 7.01 16 35 H 0.08 1.19 6.78 -2.39 -0.02 1.17 16 36 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.39 3.88 9.12 -74.06 -0.68 3.20 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.16 7.56 -2.39 -0.02 1.15 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.10 1.52 6.70 -2.38 -0.02 1.51 16 45 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.09 4.82 6.48 -2.91 -0.02 4.80 16 47 H 0.10 5.79 6.18 -2.91 -0.02 5.77 16 Total: -1.00 -73.63 378.32 -1.39 -75.02 By element: Atomic # 1 Polarization: 44.60 SS G_CDS: -1.25 Total: 43.35 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 4.85 Total: -20.21 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -3.45 Total: -90.02 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -3.55 Total: -49.62 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -73.63 -1.39 -75.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413484139.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.980 kcal (2) G-P(sol) polarization free energy of solvation -73.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds