Wall clock time and date at job start Tue Mar 31 2020 23:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48503 * 109.47072 * 269.99544 * 3 2 1 5 5 H 1.48501 * 109.47509 * 29.99616 * 3 2 1 6 6 H 1.48502 * 109.47330 * 150.00002 * 3 2 1 7 7 C 1.39887 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99764 * 175.56235 * 7 2 1 9 9 C 1.41156 * 120.00349 * 355.56181 * 7 2 1 10 10 C 1.40864 * 120.16434 * 214.78831 * 9 7 2 11 11 C 1.36367 * 119.82755 * 179.97438 * 10 9 7 12 12 C 1.39484 * 120.17170 * 0.02562 * 11 10 9 13 13 N 1.39236 * 119.83813 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99876 * 35.29003 * 13 12 11 15 15 O 1.21584 * 119.99990 * 355.71543 * 14 13 12 16 16 N 1.34781 * 120.00168 * 175.71236 * 14 13 12 17 17 C 1.46495 * 120.00042 * 180.02562 * 16 14 13 18 18 H 1.08997 * 109.47406 * 324.99903 * 17 16 14 19 19 C 1.52996 * 109.47349 * 85.00056 * 17 16 14 20 20 O 1.42899 * 109.47114 * 64.99714 * 19 17 16 21 21 C 1.52999 * 109.46932 * 204.99978 * 17 16 14 22 22 H 1.09000 * 109.52280 * 299.99744 * 21 17 16 23 23 C 1.53173 * 109.52504 * 60.12434 * 21 17 16 24 24 C 1.53178 * 109.03838 * 176.88327 * 23 21 17 25 25 C 1.53084 * 109.16725 * 303.02242 * 24 23 21 26 26 O 1.42907 * 109.41453 * 57.60639 * 25 24 23 27 27 C 1.42911 * 114.15348 * 298.87770 * 26 25 24 28 28 C 1.39486 * 120.32985 * 0.25375 * 12 11 10 29 29 C 1.36373 * 120.16488 * 359.47946 * 28 12 11 30 30 H 0.96998 * 120.00277 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.08599 * 359.97438 * 10 9 7 32 32 H 1.08008 * 119.92039 * 179.97438 * 11 10 9 33 33 H 0.96998 * 120.00281 * 215.29964 * 13 12 11 34 34 H 0.96997 * 119.99679 * 0.02562 * 16 14 13 35 35 H 1.09001 * 109.47616 * 184.99834 * 19 17 16 36 36 H 1.08997 * 109.47085 * 304.99937 * 19 17 16 37 37 H 0.96708 * 114.00667 * 180.02562 * 20 19 17 38 38 H 1.08999 * 109.54456 * 296.75510 * 23 21 17 39 39 H 1.09008 * 109.54348 * 56.93096 * 23 21 17 40 40 H 1.09005 * 109.52000 * 62.93472 * 24 23 21 41 41 H 1.09006 * 109.52094 * 183.11128 * 24 23 21 42 42 H 1.08999 * 109.48385 * 177.59281 * 25 24 23 43 43 H 1.09003 * 109.48266 * 297.61126 * 25 24 23 44 44 H 1.09005 * 109.42499 * 301.10723 * 27 26 25 45 45 H 1.08994 * 109.53622 * 181.07847 * 27 26 25 46 46 H 1.07995 * 119.91558 * 179.74839 * 28 12 11 47 47 H 1.08001 * 120.08533 * 180.22784 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4401 2.6528 0.6999 6 1 3.5403 1.4403 0.7000 7 6 2.0082 -1.2114 0.0005 8 1 3.0858 -1.2128 -0.0718 9 6 1.3057 -2.4321 0.0957 10 6 1.8650 -3.5178 0.7977 11 6 1.1801 -4.6937 0.8857 12 6 -0.0709 -4.8232 0.2825 13 7 -0.7639 -6.0272 0.3763 14 6 -0.6818 -6.7661 1.5004 15 8 0.0577 -6.4215 2.4019 16 7 -1.4196 -7.8872 1.6254 17 6 -1.3308 -8.6900 2.8476 18 1 -0.3096 -8.6617 3.2275 19 6 -2.2830 -8.1215 3.9016 20 8 -3.6318 -8.2653 3.4519 21 6 -1.7193 -10.1368 2.5366 22 1 -2.7405 -10.1661 2.1566 23 6 -0.7648 -10.7082 1.4838 24 6 -1.1145 -12.1792 1.2381 25 6 -1.0409 -12.9414 2.5636 26 8 -1.9296 -12.3399 3.5074 27 6 -1.6240 -10.9776 3.8124 28 6 -0.6285 -3.7545 -0.4193 29 6 0.0421 -2.5706 -0.5113 30 1 -0.4850 0.8400 -0.0004 31 1 2.8336 -3.4191 1.2649 32 1 1.6077 -5.5272 1.4233 33 1 -1.3056 -6.3343 -0.3674 34 1 -2.0093 -8.1623 0.9061 35 1 -2.1528 -8.6628 4.8387 36 1 -2.0629 -7.0656 4.0583 37 1 -4.2915 -7.9249 4.0718 38 1 -0.8695 -10.1483 0.5544 39 1 0.2618 -10.6311 1.8421 40 1 -2.1236 -12.2507 0.8321 41 1 -0.4051 -12.6090 0.5308 42 1 -1.3304 -13.9798 2.4024 43 1 -0.0218 -12.9038 2.9486 44 1 -0.6129 -10.9143 4.2148 45 1 -2.3330 -10.6013 4.5497 46 1 -1.5957 -3.8635 -0.8872 47 1 -0.3925 -1.7428 -1.0518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413484154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:06 Heat of formation + Delta-G solvation = -109.651431 kcal Electronic energy + Delta-G solvation = -28720.632470 eV Core-core repulsion = 24674.849804 eV Total energy + Delta-G solvation = -4045.782666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43055 -39.47372 -37.75885 -36.94429 -35.18055 -34.32147 -33.29706 -32.83059 -31.68873 -29.54487 -28.88807 -28.00880 -25.40153 -24.77449 -24.27332 -22.01577 -21.22720 -20.67956 -20.49253 -19.94791 -18.07174 -17.48772 -17.20423 -16.93760 -16.34765 -16.22438 -15.35643 -15.25824 -15.06774 -14.90651 -14.50601 -14.34856 -14.06467 -13.88331 -13.81900 -13.06236 -12.94644 -12.70369 -12.58500 -12.43433 -12.19929 -12.05376 -11.66001 -11.49742 -11.32113 -11.22892 -11.13260 -10.98675 -10.77167 -10.68841 -10.61227 -10.14330 -10.03829 -9.78403 -9.50563 -9.42890 -9.20793 -8.90060 -8.83217 -7.50153 -6.79550 -6.57600 -4.29820 2.69341 2.98977 3.11085 3.11536 3.15625 3.20343 3.55648 3.70172 4.00952 4.15600 4.34037 4.46052 4.53974 4.60292 4.72979 4.75085 4.86343 5.00172 5.04504 5.15112 5.21860 5.35474 5.39228 5.46823 5.52495 5.65338 5.68540 5.73334 5.76500 5.88543 6.09767 6.23279 6.47476 6.61608 6.80599 6.85624 6.90059 7.08789 7.19830 7.30882 7.44832 7.46710 7.69194 7.90355 8.01411 8.13575 8.34984 8.50739 8.67993 8.96561 8.97329 9.12862 10.33654 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028232 B = 0.002154 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.555501 B =12995.309005 C =13288.171773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.462 4.462 8 H 0.075 0.925 9 C 0.097 3.903 10 C -0.204 4.204 11 C -0.087 4.087 12 C 0.025 3.975 13 N -0.667 5.667 14 C 0.696 3.304 15 O -0.581 6.581 16 N -0.739 5.739 17 C 0.178 3.822 18 H 0.099 0.901 19 C 0.058 3.942 20 O -0.568 6.568 21 C -0.125 4.125 22 H 0.094 0.906 23 C -0.118 4.118 24 C -0.155 4.155 25 C 0.058 3.942 26 O -0.381 6.381 27 C 0.070 3.930 28 C -0.124 4.124 29 C -0.140 4.140 30 H 0.277 0.723 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.391 0.609 34 H 0.394 0.606 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.377 0.623 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.363 -20.506 3.619 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.095 3.905 10 C -0.224 4.224 11 C -0.107 4.107 12 C -0.068 4.068 13 N -0.312 5.312 14 C 0.397 3.603 15 O -0.459 6.459 16 N -0.395 5.395 17 C 0.072 3.928 18 H 0.117 0.883 19 C -0.021 4.021 20 O -0.373 6.373 21 C -0.144 4.144 22 H 0.113 0.887 23 C -0.155 4.155 24 C -0.193 4.193 25 C -0.019 4.019 26 O -0.299 6.299 27 C -0.007 4.007 28 C -0.144 4.144 29 C -0.160 4.160 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.224 0.776 34 H 0.228 0.772 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.224 0.776 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.115 0.885 46 H 0.108 0.892 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.722 -20.385 4.035 21.554 hybrid contribution -0.356 1.031 -0.236 1.116 sum -6.078 -19.354 3.799 20.639 Atomic orbital electron populations 1.69765 1.07244 1.28576 1.38568 1.25862 0.94935 1.01096 0.92664 0.86212 0.80235 0.80607 0.78983 1.19585 1.20363 1.18774 1.19469 0.94664 0.90225 1.44923 0.90705 1.17712 0.92339 0.92024 0.88459 1.20804 1.01166 0.94990 1.05481 1.20413 0.92763 0.97910 0.99596 1.17076 0.93696 0.85025 1.10976 1.42109 1.51585 1.22118 1.15429 1.16028 0.81095 0.80112 0.83073 1.90897 1.42619 1.71393 1.40986 1.45011 1.47880 1.26380 1.20185 1.20724 0.99071 0.88462 0.84537 0.88282 1.22742 0.82553 1.00666 0.96140 1.86444 1.15813 1.85597 1.49428 1.21971 1.01705 0.93410 0.97335 0.88738 1.21640 0.99188 0.95311 0.99404 1.22190 1.02789 0.96120 0.98202 1.22599 0.93732 0.96980 0.88550 1.87946 1.54638 1.25325 1.62007 1.22597 1.01025 0.81466 0.95636 1.20299 0.98370 0.93083 1.02688 1.21173 0.97306 0.95456 1.02099 0.91242 0.88683 0.87375 0.77562 0.77222 0.93041 0.92471 0.77636 0.91115 0.91631 0.91002 0.90834 0.88993 0.93174 0.93027 0.88496 0.89195 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.44 10.60 55.54 0.59 -20.85 16 2 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 3 Si 0.91 19.24 29.56 -169.99 -5.03 14.22 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.46 9.02 -37.86 -0.34 -12.81 16 8 H 0.07 1.94 7.85 -52.48 -0.41 1.53 16 9 C 0.10 2.64 5.55 -106.80 -0.59 2.04 16 10 C -0.20 -5.24 9.74 -39.26 -0.38 -5.63 16 11 C -0.09 -2.10 8.61 -39.79 -0.34 -2.44 16 12 C 0.02 0.56 6.31 -83.57 -0.53 0.03 16 13 N -0.67 -11.85 5.31 -14.10 -0.07 -11.92 16 14 C 0.70 12.22 8.36 -86.91 -0.73 11.49 16 15 O -0.58 -12.54 13.42 5.29 0.07 -12.47 16 16 N -0.74 -9.34 4.39 -58.68 -0.26 -9.60 16 17 C 0.18 1.99 1.95 -67.94 -0.13 1.86 16 18 H 0.10 1.24 7.58 -51.93 -0.39 0.85 16 19 C 0.06 0.62 6.35 37.16 0.24 0.86 16 20 O -0.57 -5.64 12.73 -35.23 -0.45 -6.09 16 21 C -0.12 -1.13 1.82 -90.48 -0.16 -1.30 16 22 H 0.09 0.95 7.56 -51.93 -0.39 0.56 16 23 C -0.12 -1.01 5.11 -26.55 -0.14 -1.15 16 24 C -0.16 -1.14 6.14 -26.60 -0.16 -1.30 16 25 C 0.06 0.44 6.84 37.20 0.25 0.70 16 26 O -0.38 -3.76 10.76 -35.23 -0.38 -4.14 16 27 C 0.07 0.61 5.71 37.20 0.21 0.82 16 28 C -0.12 -2.86 9.90 -39.79 -0.39 -3.25 16 29 C -0.14 -3.65 8.61 -39.26 -0.34 -3.99 16 30 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 31 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.11 2.60 6.22 -52.48 -0.33 2.27 16 33 H 0.39 5.51 8.83 -40.82 -0.36 5.15 16 34 H 0.39 4.15 8.43 -40.82 -0.34 3.81 16 35 H 0.05 0.43 6.77 -51.93 -0.35 0.08 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.38 2.35 9.12 45.56 0.42 2.77 16 38 H 0.07 0.62 7.57 -51.93 -0.39 0.23 16 39 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.10 0.78 6.69 -51.93 -0.35 0.44 16 46 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 47 H 0.13 3.52 6.13 -52.49 -0.32 3.20 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -32.28 377.70 -9.63 -41.92 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -6.17 Total: 15.63 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -3.63 Total: -12.39 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.26 Total: -42.37 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.76 Total: -22.70 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.28 -9.63 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413484154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.734 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds