Wall clock time and date at job start Tue Mar 31 2020 23:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48503 * 109.47072 * 269.99544 * 3 2 1 5 5 H 1.48501 * 109.47509 * 29.99616 * 3 2 1 6 6 H 1.48502 * 109.47330 * 150.00002 * 3 2 1 7 7 C 1.39887 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99764 * 175.56235 * 7 2 1 9 9 C 1.41156 * 120.00349 * 355.56181 * 7 2 1 10 10 C 1.40864 * 120.16434 * 214.78831 * 9 7 2 11 11 C 1.36367 * 119.82755 * 179.97438 * 10 9 7 12 12 C 1.39484 * 120.17170 * 0.02562 * 11 10 9 13 13 N 1.39236 * 119.83813 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99876 * 35.29003 * 13 12 11 15 15 O 1.21584 * 119.99990 * 355.71543 * 14 13 12 16 16 N 1.34781 * 120.00168 * 175.71236 * 14 13 12 17 17 C 1.46495 * 120.00042 * 180.02562 * 16 14 13 18 18 H 1.08997 * 109.47406 * 324.99903 * 17 16 14 19 19 C 1.52996 * 109.47349 * 85.00056 * 17 16 14 20 20 O 1.42899 * 109.47114 * 64.99714 * 19 17 16 21 21 C 1.52999 * 109.46932 * 204.99978 * 17 16 14 22 22 H 1.09000 * 109.52280 * 299.99744 * 21 17 16 23 23 C 1.53173 * 109.52504 * 60.12434 * 21 17 16 24 24 C 1.53178 * 109.03838 * 176.88327 * 23 21 17 25 25 C 1.53084 * 109.16725 * 303.02242 * 24 23 21 26 26 O 1.42907 * 109.41453 * 57.60639 * 25 24 23 27 27 C 1.42911 * 114.15348 * 298.87770 * 26 25 24 28 28 C 1.39486 * 120.32985 * 0.25375 * 12 11 10 29 29 C 1.36373 * 120.16488 * 359.47946 * 28 12 11 30 30 H 0.96998 * 120.00277 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.08599 * 359.97438 * 10 9 7 32 32 H 1.08008 * 119.92039 * 179.97438 * 11 10 9 33 33 H 0.96998 * 120.00281 * 215.29964 * 13 12 11 34 34 H 0.96997 * 119.99679 * 0.02562 * 16 14 13 35 35 H 1.09001 * 109.47616 * 184.99834 * 19 17 16 36 36 H 1.08997 * 109.47085 * 304.99937 * 19 17 16 37 37 H 0.96708 * 114.00667 * 180.02562 * 20 19 17 38 38 H 1.08999 * 109.54456 * 296.75510 * 23 21 17 39 39 H 1.09008 * 109.54348 * 56.93096 * 23 21 17 40 40 H 1.09005 * 109.52000 * 62.93472 * 24 23 21 41 41 H 1.09006 * 109.52094 * 183.11128 * 24 23 21 42 42 H 1.08999 * 109.48385 * 177.59281 * 25 24 23 43 43 H 1.09003 * 109.48266 * 297.61126 * 25 24 23 44 44 H 1.09005 * 109.42499 * 301.10723 * 27 26 25 45 45 H 1.08994 * 109.53622 * 181.07847 * 27 26 25 46 46 H 1.07995 * 119.91558 * 179.74839 * 28 12 11 47 47 H 1.08001 * 120.08533 * 180.22784 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4401 2.6528 0.6999 6 1 3.5403 1.4403 0.7000 7 6 2.0082 -1.2114 0.0005 8 1 3.0858 -1.2128 -0.0718 9 6 1.3057 -2.4321 0.0957 10 6 1.8650 -3.5178 0.7977 11 6 1.1801 -4.6937 0.8857 12 6 -0.0709 -4.8232 0.2825 13 7 -0.7639 -6.0272 0.3763 14 6 -0.6818 -6.7661 1.5004 15 8 0.0577 -6.4215 2.4019 16 7 -1.4196 -7.8872 1.6254 17 6 -1.3308 -8.6900 2.8476 18 1 -0.3096 -8.6617 3.2275 19 6 -2.2830 -8.1215 3.9016 20 8 -3.6318 -8.2653 3.4519 21 6 -1.7193 -10.1368 2.5366 22 1 -2.7405 -10.1661 2.1566 23 6 -0.7648 -10.7082 1.4838 24 6 -1.1145 -12.1792 1.2381 25 6 -1.0409 -12.9414 2.5636 26 8 -1.9296 -12.3399 3.5074 27 6 -1.6240 -10.9776 3.8124 28 6 -0.6285 -3.7545 -0.4193 29 6 0.0421 -2.5706 -0.5113 30 1 -0.4850 0.8400 -0.0004 31 1 2.8336 -3.4191 1.2649 32 1 1.6077 -5.5272 1.4233 33 1 -1.3056 -6.3343 -0.3674 34 1 -2.0093 -8.1623 0.9061 35 1 -2.1528 -8.6628 4.8387 36 1 -2.0629 -7.0656 4.0583 37 1 -4.2915 -7.9249 4.0718 38 1 -0.8695 -10.1483 0.5544 39 1 0.2618 -10.6311 1.8421 40 1 -2.1236 -12.2507 0.8321 41 1 -0.4051 -12.6090 0.5308 42 1 -1.3304 -13.9798 2.4024 43 1 -0.0218 -12.9038 2.9486 44 1 -0.6129 -10.9143 4.2148 45 1 -2.3330 -10.6013 4.5497 46 1 -1.5957 -3.8635 -0.8872 47 1 -0.3925 -1.7428 -1.0518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413484154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:04 Heat of formation + Delta-G solvation = -133.015361 kcal Electronic energy + Delta-G solvation = -28721.645606 eV Core-core repulsion = 24674.849804 eV Total energy + Delta-G solvation = -4046.795802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.63384 -40.51223 -39.26561 -38.08415 -36.27099 -35.90528 -34.76391 -33.98482 -32.62035 -31.45216 -30.61443 -29.00977 -26.82293 -25.83171 -25.12689 -23.53229 -22.82097 -22.01530 -21.57946 -21.12980 -19.46089 -19.12419 -18.42215 -18.14993 -17.33809 -17.04027 -16.97460 -16.48289 -16.23905 -15.80272 -15.65883 -15.49015 -15.41820 -14.98134 -14.91894 -14.63955 -14.49291 -13.98797 -13.69300 -13.58996 -13.41420 -13.27974 -13.13935 -12.98907 -12.82250 -12.74749 -12.46866 -12.14036 -11.97775 -11.81290 -11.50238 -11.39110 -11.27864 -11.22592 -11.06146 -10.87554 -10.63493 -10.43265 -10.06409 -9.44521 -8.67276 -8.48253 -6.30563 0.86353 1.16369 1.39893 1.47467 1.54551 1.73015 2.21287 2.25936 2.82881 2.92189 3.30883 3.38540 3.59843 3.70495 3.76100 3.88795 4.05282 4.18618 4.26391 4.29577 4.40043 4.40872 4.52235 4.55606 4.61959 4.68967 4.73654 4.83543 4.94162 4.95088 5.03526 5.10592 5.15278 5.16680 5.19606 5.34662 5.37484 5.46030 5.54598 5.70929 5.83860 6.05358 6.13396 6.24375 6.27664 6.41913 6.70394 6.84460 6.98911 7.03186 7.15196 7.66486 8.44414 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028232 B = 0.002154 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.555501 B =12995.309005 C =13288.171773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.026 3.974 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.498 4.498 8 H 0.072 0.928 9 C 0.065 3.935 10 C -0.219 4.219 11 C -0.096 4.096 12 C 0.044 3.956 13 N -0.660 5.660 14 C 0.696 3.304 15 O -0.622 6.622 16 N -0.716 5.716 17 C 0.175 3.825 18 H 0.085 0.915 19 C 0.064 3.936 20 O -0.575 6.575 21 C -0.109 4.109 22 H 0.091 0.909 23 C -0.120 4.120 24 C -0.150 4.150 25 C 0.052 3.948 26 O -0.397 6.397 27 C 0.069 3.931 28 C -0.122 4.122 29 C -0.158 4.158 30 H 0.284 0.716 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.413 0.587 34 H 0.409 0.591 35 H 0.077 0.923 36 H 0.026 0.974 37 H 0.394 0.606 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.103 0.897 46 H 0.122 0.878 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.459 -21.882 3.501 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.062 3.938 10 C -0.239 4.239 11 C -0.117 4.117 12 C -0.051 4.051 13 N -0.308 5.308 14 C 0.397 3.603 15 O -0.503 6.503 16 N -0.372 5.372 17 C 0.069 3.931 18 H 0.103 0.897 19 C -0.015 4.015 20 O -0.382 6.382 21 C -0.129 4.129 22 H 0.109 0.891 23 C -0.157 4.157 24 C -0.188 4.188 25 C -0.024 4.024 26 O -0.316 6.316 27 C -0.008 4.008 28 C -0.142 4.142 29 C -0.178 4.178 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.249 0.751 34 H 0.245 0.755 35 H 0.095 0.905 36 H 0.044 0.956 37 H 0.243 0.757 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.125 0.875 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.121 0.879 46 H 0.140 0.860 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.880 -21.833 3.899 23.221 hybrid contribution -0.110 1.253 -0.161 1.268 sum -6.989 -20.580 3.738 22.054 Atomic orbital electron populations 1.69830 1.08542 1.29851 1.38896 1.26729 0.95825 1.04284 0.91678 0.85112 0.78661 0.75879 0.79445 1.18419 1.19460 1.18715 1.19695 0.94777 0.91332 1.47085 0.91009 1.18025 0.93411 0.92725 0.89619 1.20927 1.01566 0.95513 1.05891 1.20513 0.93661 0.97449 1.00054 1.17082 0.92965 0.86364 1.08642 1.41898 1.51475 1.20809 1.16602 1.16150 0.81022 0.80844 0.82330 1.90878 1.44458 1.72621 1.42312 1.44833 1.46602 1.24622 1.21140 1.20876 0.98772 0.89545 0.83915 0.89669 1.22592 0.82941 0.98991 0.96991 1.86397 1.15710 1.85695 1.50442 1.21820 1.01412 0.91775 0.97873 0.89098 1.21657 0.98694 0.96337 0.99037 1.22158 1.03109 0.95086 0.98421 1.22778 0.93777 0.97668 0.88210 1.87929 1.55445 1.25589 1.62635 1.22630 1.01573 0.81186 0.95387 1.20526 0.99294 0.92089 1.02323 1.21155 0.97503 0.96345 1.02776 0.90566 0.88661 0.87351 0.75075 0.75541 0.90464 0.95609 0.75657 0.91270 0.92237 0.91039 0.89526 0.87523 0.92691 0.92546 0.87854 0.85970 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.16 10.60 21.82 0.23 -44.93 16 2 C 0.03 1.37 5.42 85.23 0.46 1.83 16 3 Si 0.99 39.73 29.56 68.60 2.03 41.76 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 7 C -0.50 -27.79 9.02 23.39 0.21 -27.58 16 8 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 9 C 0.06 3.62 5.55 -21.28 -0.12 3.50 16 10 C -0.22 -11.61 9.74 22.48 0.22 -11.39 16 11 C -0.10 -4.74 8.61 22.13 0.19 -4.55 16 12 C 0.04 1.93 6.31 38.57 0.24 2.17 16 13 N -0.66 -22.39 5.31 -316.78 -1.68 -24.07 16 14 C 0.70 23.69 8.36 179.05 1.50 25.19 16 15 O -0.62 -26.84 13.42 -3.98 -0.05 -26.89 16 16 N -0.72 -16.97 4.39 -457.83 -2.01 -18.98 16 17 C 0.17 3.66 1.95 44.99 0.09 3.75 16 18 H 0.09 2.08 7.58 -2.39 -0.02 2.07 16 19 C 0.06 1.28 6.35 71.98 0.46 1.73 16 20 O -0.57 -10.18 12.73 -148.98 -1.90 -12.08 16 21 C -0.11 -1.78 1.82 -10.71 -0.02 -1.80 16 22 H 0.09 1.60 7.56 -2.39 -0.02 1.59 16 23 C -0.12 -1.83 5.11 30.71 0.16 -1.67 16 24 C -0.15 -1.86 6.14 30.68 0.19 -1.67 16 25 C 0.05 0.67 6.84 72.01 0.49 1.17 16 26 O -0.40 -7.02 10.76 -148.98 -1.60 -8.62 16 27 C 0.07 1.07 5.71 72.01 0.41 1.48 16 28 C -0.12 -5.55 9.90 22.14 0.22 -5.33 16 29 C -0.16 -8.36 8.61 22.48 0.19 -8.16 16 30 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 31 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.11 5.29 6.22 -2.91 -0.02 5.27 16 33 H 0.41 10.52 8.83 -92.71 -0.82 9.70 16 34 H 0.41 7.59 8.43 -92.71 -0.78 6.81 16 35 H 0.08 1.15 6.77 -2.39 -0.02 1.13 16 36 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.39 4.05 9.12 -74.05 -0.68 3.38 16 38 H 0.07 1.07 7.57 -2.39 -0.02 1.05 16 39 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.10 1.44 6.69 -2.39 -0.02 1.42 16 46 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 47 H 0.12 6.52 6.13 -2.91 -0.02 6.50 16 Total: -1.00 -71.23 377.70 -1.35 -72.58 By element: Atomic # 1 Polarization: 43.80 SS G_CDS: -1.25 Total: 42.55 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 4.89 Total: -21.32 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -3.46 Total: -87.98 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -3.55 Total: -47.59 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -71.23 -1.35 -72.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413484154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.436 kcal (2) G-P(sol) polarization free energy of solvation -71.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds