Wall clock time and date at job start Wed Apr 1 2020 00:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86797 * 119.99842 * 2 1 4 4 H 1.48498 * 109.47018 * 270.00008 * 3 2 1 5 5 H 1.48501 * 109.47316 * 29.99828 * 3 2 1 6 6 H 1.48501 * 109.47376 * 149.99769 * 3 2 1 7 7 C 1.38646 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00656 * 0.02562 * 7 2 1 9 9 O 1.34834 * 119.99947 * 179.97438 * 7 2 1 10 10 C 1.35751 * 117.00499 * 185.05607 * 9 7 2 11 11 C 1.38878 * 120.06757 * 354.47366 * 10 9 7 12 12 C 1.38093 * 119.93614 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06581 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.93315 * 179.97438 * 13 12 11 15 15 N 1.46909 * 109.47174 * 89.99800 * 14 13 12 16 16 C 1.46900 * 110.99572 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.46486 * 179.97438 * 16 15 14 18 18 H 1.08998 * 109.47637 * 60.00239 * 17 16 15 19 19 O 1.42895 * 109.47282 * 299.99720 * 17 16 15 20 20 C 1.53001 * 109.46866 * 180.02562 * 17 16 15 21 21 N 1.46505 * 109.47110 * 185.00109 * 20 17 16 22 22 C 1.34780 * 119.99986 * 180.27210 * 21 20 17 23 23 O 1.21281 * 119.99759 * 359.72568 * 22 21 20 24 24 C 1.50697 * 120.00043 * 179.72453 * 22 21 20 25 25 C 1.53001 * 117.49650 * 248.62437 * 24 22 21 26 26 C 1.53003 * 117.49995 * 180.02562 * 24 22 21 27 27 C 1.38301 * 120.13720 * 0.25207 * 13 12 11 28 28 C 1.38099 * 120.06936 * 359.44905 * 27 13 12 29 29 H 0.96996 * 120.00647 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.03689 * 359.97438 * 11 10 9 31 31 H 1.07997 * 119.97419 * 180.02562 * 12 11 10 32 32 H 1.08998 * 109.46909 * 329.99962 * 14 13 12 33 33 H 1.09000 * 109.47410 * 209.99520 * 14 13 12 34 34 H 1.00902 * 110.99870 * 56.04778 * 15 14 13 35 35 H 1.09005 * 109.47285 * 60.00261 * 16 15 14 36 36 H 1.08993 * 109.47453 * 299.99393 * 16 15 14 37 37 H 0.96701 * 114.00299 * 300.00111 * 19 17 16 38 38 H 1.08997 * 109.47400 * 65.00101 * 20 17 16 39 39 H 1.09003 * 109.47185 * 305.00173 * 20 17 16 40 40 H 0.96997 * 119.99703 * 0.02562 * 21 20 17 41 41 H 1.08997 * 115.54958 * 34.33297 * 24 22 21 42 42 H 1.08993 * 117.50215 * 359.97438 * 25 24 22 43 43 H 1.09001 * 117.49694 * 145.02265 * 25 24 22 44 44 H 1.08997 * 117.49785 * 214.97782 * 26 24 22 45 45 H 1.08999 * 117.49333 * 359.97438 * 26 24 22 46 46 H 1.08006 * 119.96688 * 179.71281 * 27 13 12 47 47 H 1.08003 * 120.03535 * 180.26978 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4403 0.7001 7 6 2.0087 -1.2007 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4056 -0.1060 11 6 3.2235 -3.5744 -0.0921 12 6 3.8533 -4.7986 -0.1996 13 6 5.2296 -4.8615 -0.3205 14 6 5.9139 -6.1992 -0.4370 15 7 6.0179 -6.5743 -1.8536 16 6 6.6808 -7.8763 -2.0060 17 6 6.7698 -8.2323 -3.4914 18 1 7.3451 -7.4683 -4.0144 19 8 5.4541 -8.3000 -4.0447 20 6 7.4597 -9.5887 -3.6502 21 7 7.6523 -9.8749 -5.0740 22 6 8.2400 -11.0259 -5.4566 23 8 8.6137 -11.8225 -4.6219 24 6 8.4325 -11.3231 -6.9214 25 6 7.6055 -12.4594 -7.5263 26 6 9.1053 -12.6465 -7.2913 27 6 5.9798 -3.6997 -0.3289 28 6 5.3552 -2.4721 -0.2279 29 1 -0.4851 0.8400 0.0004 30 1 2.1488 -3.5261 0.0034 31 1 3.2707 -5.7079 -0.1894 32 1 5.3335 -6.9519 0.0965 33 1 6.9121 -6.1356 -0.0039 34 1 6.4963 -5.8604 -2.3825 35 1 6.1053 -8.6405 -1.4835 36 1 7.6843 -7.8248 -1.5837 37 1 4.8851 -8.9607 -3.6266 38 1 6.8397 -10.3662 -3.2040 39 1 8.4280 -9.5646 -3.1502 40 1 7.3537 -9.2376 -5.7415 41 1 8.6394 -10.4593 -7.5531 42 1 6.9226 -12.9923 -6.8647 43 1 7.2682 -12.3432 -8.5562 44 1 9.7549 -12.6535 -8.1665 45 1 9.4091 -13.3020 -6.4750 46 1 7.0548 -3.7522 -0.4187 47 1 5.9412 -1.5649 -0.2389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001422265036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:52 Heat of formation + Delta-G solvation = -64.266038 kcal Electronic energy + Delta-G solvation = -26744.840785 eV Core-core repulsion = 22701.026178 eV Total energy + Delta-G solvation = -4043.814608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.45 seconds Orbital eigenvalues (eV) -40.39868 -39.27031 -38.50989 -37.11063 -36.54408 -35.11827 -34.59420 -32.42195 -31.09974 -30.26562 -29.29048 -26.56207 -25.36618 -24.11101 -23.01457 -22.85842 -22.21170 -22.06183 -20.50722 -20.29668 -17.99761 -17.89744 -17.38200 -17.19084 -16.70742 -15.94660 -15.76015 -15.27311 -15.14243 -14.86096 -14.79697 -14.31405 -14.27053 -14.02928 -13.89559 -13.67719 -13.36410 -13.00752 -12.85519 -12.80120 -12.56850 -12.36726 -12.17889 -12.03879 -11.70258 -11.35212 -11.31470 -11.12614 -11.02281 -10.88613 -10.76062 -10.69966 -10.46787 -10.17384 -10.11389 -9.53292 -9.39559 -8.88325 -8.46503 -8.26398 -7.34276 -6.42580 -4.09269 2.07709 2.11501 2.15594 2.63750 3.20982 3.24794 3.38232 3.39075 3.85648 4.11237 4.22214 4.22596 4.31545 4.39519 4.42221 4.52152 4.63565 4.72575 4.76879 4.83962 5.02060 5.09929 5.11711 5.18398 5.25671 5.29488 5.32191 5.36399 5.45055 5.62650 5.63984 5.65284 5.70912 5.80428 5.95811 6.12550 6.32569 6.55185 6.77703 6.86508 7.03336 7.06036 7.18841 7.29381 7.32589 7.41583 7.60136 7.79454 7.80597 8.02725 8.92571 9.54669 10.65013 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026037 B = 0.001534 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.154686 B =18249.489756 C =18618.234947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.217 6.217 10 C 0.162 3.838 11 C -0.222 4.222 12 C -0.049 4.049 13 C -0.178 4.178 14 C 0.117 3.883 15 N -0.674 5.674 16 C 0.028 3.972 17 C 0.100 3.900 18 H 0.103 0.897 19 O -0.543 6.543 20 C 0.087 3.913 21 N -0.719 5.719 22 C 0.542 3.458 23 O -0.544 6.544 24 C -0.197 4.197 25 C -0.151 4.151 26 C -0.148 4.148 27 C -0.071 4.071 28 C -0.194 4.194 29 H 0.279 0.721 30 H 0.133 0.867 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.028 0.972 34 H 0.343 0.657 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.376 0.624 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.407 0.593 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.749 -21.173 -11.499 29.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.109 3.891 11 C -0.241 4.241 12 C -0.067 4.067 13 C -0.179 4.179 14 C -0.011 4.011 15 N -0.305 5.305 16 C -0.102 4.102 17 C 0.040 3.960 18 H 0.121 0.879 19 O -0.348 6.348 20 C -0.037 4.037 21 N -0.371 5.371 22 C 0.328 3.672 23 O -0.421 6.421 24 C -0.218 4.218 25 C -0.189 4.189 26 C -0.186 4.186 27 C -0.090 4.090 28 C -0.213 4.213 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.128 0.872 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.161 0.839 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.224 0.776 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.242 0.758 41 H 0.142 0.858 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.486 -21.156 -11.248 29.084 hybrid contribution 0.699 0.924 0.291 1.195 sum 17.185 -20.232 -10.956 28.718 Atomic orbital electron populations 1.69642 1.05561 1.28501 1.47944 1.24464 0.95024 0.98814 0.95667 0.86181 0.80306 0.81451 0.78954 1.19883 1.20773 1.18410 1.20777 0.76863 0.96664 1.52217 0.87582 1.83569 1.22661 1.25815 1.80189 1.19141 0.91707 0.85516 0.92701 1.21290 1.01149 0.91878 1.09817 1.20620 0.93378 0.96635 0.96109 1.19150 0.93863 0.93299 1.11614 1.20651 0.97747 0.94688 0.87988 1.60440 1.56165 1.03209 1.10721 1.22560 0.97819 0.94087 0.95759 1.22106 0.84809 0.95049 0.94034 0.87910 1.86626 1.22821 1.63174 1.62153 1.22083 1.01679 0.97728 0.82236 1.45798 1.61474 1.21437 1.08396 1.19705 0.76783 0.81003 0.89673 1.90705 1.50223 1.47479 1.53717 1.22192 1.09889 0.95575 0.94136 1.22941 0.94855 0.99090 1.01997 1.22956 0.95321 0.96769 1.03519 1.20471 0.98048 0.91535 0.98911 1.20157 0.91978 0.97748 1.11415 0.91038 0.84957 0.87208 0.91050 0.95373 0.83851 0.90441 0.94393 0.77616 0.90948 0.90581 0.75789 0.85752 0.88220 0.87623 0.87836 0.87413 0.87359 0.86632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.31 13.96 55.48 0.77 -24.53 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.60 28.62 -169.99 -4.86 16.73 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.39 -10.96 9.95 30.88 0.31 -10.65 16 8 H 0.11 3.05 5.44 -52.49 -0.29 2.76 16 9 O -0.22 -5.73 8.59 0.04 0.00 -5.72 16 10 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 11 C -0.22 -4.76 9.17 -39.40 -0.36 -5.12 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.18 -2.82 5.40 -104.57 -0.56 -3.38 16 14 C 0.12 1.42 5.81 -4.97 -0.03 1.39 16 15 N -0.67 -7.34 6.36 -115.05 -0.73 -8.07 16 16 C 0.03 0.22 5.35 -3.82 -0.02 0.20 16 17 C 0.10 0.69 3.21 -26.73 -0.09 0.61 16 18 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 19 O -0.54 -4.65 13.15 -35.23 -0.46 -5.12 16 20 C 0.09 0.61 5.31 -4.04 -0.02 0.58 16 21 N -0.72 -5.01 5.50 -60.29 -0.33 -5.34 16 22 C 0.54 4.84 7.61 -10.99 -0.08 4.75 16 23 O -0.54 -6.96 16.26 5.56 0.09 -6.87 16 24 C -0.20 -1.21 6.19 -91.77 -0.57 -1.78 16 25 C -0.15 -0.80 10.23 -26.75 -0.27 -1.07 16 26 C -0.15 -0.87 10.04 -26.75 -0.27 -1.13 16 27 C -0.07 -1.15 9.69 -39.61 -0.38 -1.53 16 28 C -0.19 -3.76 9.99 -39.40 -0.39 -4.16 16 29 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.13 3.00 5.64 -52.48 -0.30 2.70 16 31 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 33 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 34 H 0.34 3.78 8.72 -39.29 -0.34 3.44 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.38 2.37 9.04 45.56 0.41 2.78 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.41 2.19 8.47 -40.82 -0.35 1.85 16 41 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.11 0.80 7.67 -51.93 -0.40 0.40 16 46 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 47 H 0.12 2.10 8.06 -52.48 -0.42 1.67 16 LS Contribution 400.44 15.07 6.03 6.03 Total: -1.00 -32.85 400.44 -9.28 -42.13 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.30 Total: 8.17 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -3.49 Total: -17.42 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.29 Total: -37.95 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.37 Total: -17.71 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.86 Total: 16.73 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.85 -9.28 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422265036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.134 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.45 seconds