Wall clock time and date at job start Wed Apr 1 2020 00:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86797 * 119.99842 * 2 1 4 4 H 1.48498 * 109.47018 * 270.00008 * 3 2 1 5 5 H 1.48501 * 109.47316 * 29.99828 * 3 2 1 6 6 H 1.48501 * 109.47376 * 149.99769 * 3 2 1 7 7 C 1.38646 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00656 * 0.02562 * 7 2 1 9 9 O 1.34834 * 119.99947 * 179.97438 * 7 2 1 10 10 C 1.35751 * 117.00499 * 185.05607 * 9 7 2 11 11 C 1.38878 * 120.06757 * 354.47366 * 10 9 7 12 12 C 1.38093 * 119.93614 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06581 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.93315 * 179.97438 * 13 12 11 15 15 N 1.46909 * 109.47174 * 89.99800 * 14 13 12 16 16 C 1.46900 * 110.99572 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.46486 * 179.97438 * 16 15 14 18 18 H 1.08998 * 109.47637 * 60.00239 * 17 16 15 19 19 O 1.42895 * 109.47282 * 299.99720 * 17 16 15 20 20 C 1.53001 * 109.46866 * 180.02562 * 17 16 15 21 21 N 1.46505 * 109.47110 * 185.00109 * 20 17 16 22 22 C 1.34780 * 119.99986 * 180.27210 * 21 20 17 23 23 O 1.21281 * 119.99759 * 359.72568 * 22 21 20 24 24 C 1.50697 * 120.00043 * 179.72453 * 22 21 20 25 25 C 1.53001 * 117.49650 * 248.62437 * 24 22 21 26 26 C 1.53003 * 117.49995 * 180.02562 * 24 22 21 27 27 C 1.38301 * 120.13720 * 0.25207 * 13 12 11 28 28 C 1.38099 * 120.06936 * 359.44905 * 27 13 12 29 29 H 0.96996 * 120.00647 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.03689 * 359.97438 * 11 10 9 31 31 H 1.07997 * 119.97419 * 180.02562 * 12 11 10 32 32 H 1.08998 * 109.46909 * 329.99962 * 14 13 12 33 33 H 1.09000 * 109.47410 * 209.99520 * 14 13 12 34 34 H 1.00902 * 110.99870 * 56.04778 * 15 14 13 35 35 H 1.09005 * 109.47285 * 60.00261 * 16 15 14 36 36 H 1.08993 * 109.47453 * 299.99393 * 16 15 14 37 37 H 0.96701 * 114.00299 * 300.00111 * 19 17 16 38 38 H 1.08997 * 109.47400 * 65.00101 * 20 17 16 39 39 H 1.09003 * 109.47185 * 305.00173 * 20 17 16 40 40 H 0.96997 * 119.99703 * 0.02562 * 21 20 17 41 41 H 1.08997 * 115.54958 * 34.33297 * 24 22 21 42 42 H 1.08993 * 117.50215 * 359.97438 * 25 24 22 43 43 H 1.09001 * 117.49694 * 145.02265 * 25 24 22 44 44 H 1.08997 * 117.49785 * 214.97782 * 26 24 22 45 45 H 1.08999 * 117.49333 * 359.97438 * 26 24 22 46 46 H 1.08006 * 119.96688 * 179.71281 * 27 13 12 47 47 H 1.08003 * 120.03535 * 180.26978 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4403 0.7001 7 6 2.0087 -1.2007 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4056 -0.1060 11 6 3.2235 -3.5744 -0.0921 12 6 3.8533 -4.7986 -0.1996 13 6 5.2296 -4.8615 -0.3205 14 6 5.9139 -6.1992 -0.4370 15 7 6.0179 -6.5743 -1.8536 16 6 6.6808 -7.8763 -2.0060 17 6 6.7698 -8.2323 -3.4914 18 1 7.3451 -7.4683 -4.0144 19 8 5.4541 -8.3000 -4.0447 20 6 7.4597 -9.5887 -3.6502 21 7 7.6523 -9.8749 -5.0740 22 6 8.2400 -11.0259 -5.4566 23 8 8.6137 -11.8225 -4.6219 24 6 8.4325 -11.3231 -6.9214 25 6 7.6055 -12.4594 -7.5263 26 6 9.1053 -12.6465 -7.2913 27 6 5.9798 -3.6997 -0.3289 28 6 5.3552 -2.4721 -0.2279 29 1 -0.4851 0.8400 0.0004 30 1 2.1488 -3.5261 0.0034 31 1 3.2707 -5.7079 -0.1894 32 1 5.3335 -6.9519 0.0965 33 1 6.9121 -6.1356 -0.0039 34 1 6.4963 -5.8604 -2.3825 35 1 6.1053 -8.6405 -1.4835 36 1 7.6843 -7.8248 -1.5837 37 1 4.8851 -8.9607 -3.6266 38 1 6.8397 -10.3662 -3.2040 39 1 8.4280 -9.5646 -3.1502 40 1 7.3537 -9.2376 -5.7415 41 1 8.6394 -10.4593 -7.5531 42 1 6.9226 -12.9923 -6.8647 43 1 7.2682 -12.3432 -8.5562 44 1 9.7549 -12.6535 -8.1665 45 1 9.4091 -13.3020 -6.4750 46 1 7.0548 -3.7522 -0.4187 47 1 5.9412 -1.5649 -0.2389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001422265036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:51 Heat of formation + Delta-G solvation = -90.075231 kcal Electronic energy + Delta-G solvation = -26745.959956 eV Core-core repulsion = 22701.026178 eV Total energy + Delta-G solvation = -4044.933778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.04936 -40.88816 -39.27096 -38.52880 -37.09471 -36.10610 -35.28016 -34.44313 -32.13175 -31.78102 -30.33248 -27.80270 -26.79779 -25.10002 -23.77626 -23.67848 -23.30187 -22.78057 -21.85386 -21.01708 -19.79763 -19.08920 -18.55513 -17.98998 -17.34223 -16.73488 -16.68945 -16.41251 -16.11142 -15.88653 -15.72263 -15.63859 -15.54300 -15.32319 -14.97580 -14.88285 -14.47155 -14.28050 -14.17444 -14.03161 -13.55633 -13.50167 -13.28155 -13.00018 -12.72058 -12.45666 -12.43787 -12.38116 -12.20321 -11.93139 -11.88411 -11.56035 -11.48645 -11.26656 -11.16293 -10.90699 -10.80077 -10.16969 -9.78385 -9.30062 -8.95513 -8.49554 -6.22314 0.59213 0.63664 1.31449 1.35696 1.44015 1.52015 2.06646 2.28296 2.73824 2.91777 3.00978 3.15280 3.32924 3.56222 3.71888 3.85255 3.87640 3.97384 4.02415 4.05937 4.10586 4.14901 4.19712 4.23303 4.44715 4.52620 4.60500 4.65653 4.71377 4.73599 4.75811 4.87861 4.91817 5.00135 5.02181 5.07593 5.21153 5.27391 5.36848 5.39865 5.57941 5.77093 5.83528 5.92255 6.08806 6.27552 6.46995 6.49268 6.84730 6.86231 7.18742 7.59235 8.62151 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026037 B = 0.001534 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.154686 B =18249.489756 C =18618.234947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.400 4.400 8 H 0.079 0.921 9 O -0.246 6.246 10 C 0.119 3.881 11 C -0.240 4.240 12 C -0.054 4.054 13 C -0.150 4.150 14 C 0.121 3.879 15 N -0.686 5.686 16 C 0.032 3.968 17 C 0.113 3.887 18 H 0.108 0.892 19 O -0.560 6.560 20 C 0.092 3.908 21 N -0.709 5.709 22 C 0.535 3.465 23 O -0.590 6.590 24 C -0.201 4.201 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.061 4.061 28 C -0.193 4.193 29 H 0.285 0.715 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.344 0.656 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.385 0.615 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.416 0.584 41 H 0.150 0.850 42 H 0.086 0.914 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.085 0.915 46 H 0.154 0.846 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.876 -22.104 -12.691 32.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.070 3.930 11 C -0.259 4.259 12 C -0.073 4.073 13 C -0.151 4.151 14 C -0.007 4.007 15 N -0.318 5.318 16 C -0.098 4.098 17 C 0.053 3.947 18 H 0.126 0.874 19 O -0.367 6.367 20 C -0.033 4.033 21 N -0.361 5.361 22 C 0.323 3.677 23 O -0.472 6.472 24 C -0.222 4.222 25 C -0.181 4.181 26 C -0.191 4.191 27 C -0.079 4.079 28 C -0.212 4.212 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.147 0.853 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.162 0.838 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.234 0.766 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.253 0.747 41 H 0.168 0.832 42 H 0.105 0.895 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.103 0.897 46 H 0.172 0.828 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.626 -22.112 -12.455 32.082 hybrid contribution -0.081 0.850 0.633 1.063 sum 19.544 -21.262 -11.823 31.206 Atomic orbital electron populations 1.69729 1.06926 1.29591 1.50194 1.25289 0.95889 1.02179 0.95519 0.85198 0.78767 0.77337 0.79270 1.19072 1.19176 1.18709 1.20700 0.78163 0.96079 1.52668 0.90333 1.83509 1.21178 1.27544 1.83151 1.19712 0.93339 0.85002 0.94987 1.21282 1.00075 0.93389 1.11173 1.20879 0.94858 0.95783 0.95744 1.19685 0.92941 0.95524 1.06962 1.20634 0.98586 0.92257 0.89223 1.60344 1.57342 1.04415 1.09707 1.22576 0.98413 0.92512 0.96328 1.21998 0.84225 0.94889 0.93602 0.87446 1.86603 1.23590 1.63691 1.62778 1.22017 1.01450 0.97605 0.82209 1.45766 1.60489 1.21053 1.08757 1.20233 0.76102 0.80764 0.90613 1.90682 1.52339 1.48973 1.55157 1.22298 1.10528 0.96687 0.92669 1.23017 0.94227 0.98038 1.02853 1.23000 0.96245 0.96266 1.03618 1.20969 1.00294 0.90061 0.96610 1.20512 0.90430 0.99886 1.10364 0.90585 0.87790 0.85289 0.90266 0.92992 0.83763 0.89954 0.92882 0.76627 0.91484 0.90760 0.74668 0.83204 0.89514 0.85242 0.85648 0.89674 0.82810 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.63 13.96 21.61 0.30 -55.33 16 2 C 0.01 0.55 5.49 84.83 0.47 1.02 16 3 Si 0.97 45.67 28.62 68.60 1.96 47.64 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.40 -23.87 9.95 67.92 0.68 -23.19 16 8 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 9 O -0.25 -13.50 8.59 -22.79 -0.20 -13.70 16 10 C 0.12 5.56 6.65 22.58 0.15 5.72 16 11 C -0.24 -10.67 9.17 22.39 0.21 -10.46 16 12 C -0.05 -1.87 9.69 22.25 0.22 -1.66 16 13 C -0.15 -4.23 5.40 -19.83 -0.11 -4.34 16 14 C 0.12 2.36 5.81 85.56 0.50 2.86 16 15 N -0.69 -12.15 6.36 -517.91 -3.29 -15.44 16 16 C 0.03 0.37 5.35 86.30 0.46 0.84 16 17 C 0.11 1.24 3.21 30.59 0.10 1.34 16 18 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 19 O -0.56 -8.25 13.15 -148.98 -1.96 -10.21 16 20 C 0.09 1.09 5.31 86.38 0.46 1.55 16 21 N -0.71 -8.63 5.50 -463.04 -2.55 -11.18 16 22 C 0.53 9.02 7.61 87.66 0.67 9.68 16 23 O -0.59 -15.13 16.26 -3.03 -0.05 -15.18 16 24 C -0.20 -2.11 6.19 -11.54 -0.07 -2.18 16 25 C -0.14 -1.27 10.23 30.58 0.31 -0.96 16 26 C -0.15 -1.61 10.04 30.58 0.31 -1.30 16 27 C -0.06 -1.74 9.69 22.25 0.22 -1.53 16 28 C -0.19 -7.18 9.99 22.39 0.22 -6.96 16 29 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.10 5.15 5.64 -2.91 -0.02 5.13 16 31 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 33 H 0.05 0.83 8.08 -2.39 -0.02 0.81 16 34 H 0.34 6.08 8.72 -89.69 -0.78 5.30 16 35 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.38 4.05 9.04 -74.06 -0.67 3.38 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.42 3.52 8.47 -92.71 -0.79 2.74 16 41 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 43 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.08 1.29 7.67 -2.39 -0.02 1.27 16 46 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 47 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -76.11 400.44 -2.22 -78.33 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -1.22 Total: 24.65 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 4.78 Total: -29.58 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -5.54 Total: -81.95 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -2.20 Total: -39.09 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.96 Total: 47.64 kcal Total: -76.11 -2.22 -78.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422265036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.743 kcal (2) G-P(sol) polarization free energy of solvation -76.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds