Wall clock time and date at job start Wed Apr 1 2020 00:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38105 * 119.92781 * 179.76650 * 11 10 9 13 13 C 1.38304 * 120.06646 * 0.48744 * 12 11 10 14 14 C 1.50707 * 119.92974 * 179.74714 * 13 12 11 15 15 N 1.46901 * 109.46748 * 270.01956 * 14 13 12 16 16 C 1.46900 * 110.99887 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.47200 * 180.02562 * 16 15 14 18 18 H 1.09006 * 109.47072 * 304.99820 * 17 16 15 19 19 O 1.42896 * 109.47532 * 65.00074 * 17 16 15 20 20 C 1.53004 * 109.47111 * 185.00391 * 17 16 15 21 21 N 1.46499 * 109.47168 * 179.97438 * 20 17 16 22 22 C 1.34775 * 120.00042 * 179.97438 * 21 20 17 23 23 O 1.21280 * 120.00234 * 0.02562 * 22 21 20 24 24 C 1.50709 * 119.99991 * 179.97438 * 22 21 20 25 25 C 1.53003 * 117.49584 * 248.62518 * 24 22 21 26 26 C 1.53002 * 117.49819 * 180.02562 * 24 22 21 27 27 C 1.38302 * 120.13995 * 359.76849 * 13 12 11 28 28 C 1.38101 * 120.06877 * 359.97438 * 27 13 12 29 29 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 31 31 H 1.07996 * 119.96589 * 180.23432 * 12 11 10 32 32 H 1.09002 * 109.47040 * 30.01809 * 14 13 12 33 33 H 1.08995 * 109.46954 * 150.02268 * 14 13 12 34 34 H 1.00909 * 111.00123 * 56.04710 * 15 14 13 35 35 H 1.09001 * 109.47160 * 300.00416 * 16 15 14 36 36 H 1.09001 * 109.47222 * 60.00052 * 16 15 14 37 37 H 0.96702 * 113.99591 * 59.99805 * 19 17 16 38 38 H 1.09001 * 109.46807 * 299.99221 * 20 17 16 39 39 H 1.09001 * 109.47465 * 59.99679 * 20 17 16 40 40 H 0.97003 * 120.00159 * 359.97438 * 21 20 17 41 41 H 1.08994 * 115.54703 * 34.33203 * 24 22 21 42 42 H 1.08994 * 117.49927 * 0.02562 * 25 24 22 43 43 H 1.08999 * 117.49411 * 145.02501 * 25 24 22 44 44 H 1.08994 * 117.49466 * 214.97791 * 26 24 22 45 45 H 1.09002 * 117.49464 * 359.97438 * 26 24 22 46 46 H 1.07999 * 119.96521 * 179.97438 * 27 13 12 47 47 H 1.07997 * 120.03156 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9791 -3.6994 0.3388 13 6 5.2293 -4.8615 0.3260 14 6 5.9134 -6.1991 0.4444 15 7 6.2548 -6.6948 -0.8957 16 6 6.9253 -7.9996 -0.8193 17 6 7.2650 -8.4819 -2.2309 18 1 6.3601 -8.4931 -2.8386 19 8 8.2224 -7.5987 -2.8186 20 6 7.8496 -9.8941 -2.1606 21 7 8.1743 -10.3561 -3.5123 22 6 8.7057 -11.5809 -3.6964 23 8 8.9146 -12.3009 -2.7430 24 6 9.0392 -12.0565 -5.0871 25 6 8.1966 -13.1952 -5.6653 26 6 9.6394 -13.4565 -5.2300 27 6 3.8530 -4.7987 0.2042 28 6 3.2232 -3.5745 0.0955 29 1 -0.4849 0.8401 0.0004 30 1 5.9419 -1.5655 0.2316 31 1 7.0536 -3.7518 0.4337 32 1 6.8234 -6.0908 1.0345 33 1 5.2448 -6.9070 0.9342 34 1 6.8217 -6.0259 -1.3951 35 1 7.8424 -7.9034 -0.2380 36 1 6.2641 -8.7203 -0.3380 37 1 9.0545 -7.5391 -2.3295 38 1 8.7545 -9.8828 -1.5530 39 1 7.1193 -10.5678 -1.7124 40 1 8.0068 -9.7805 -4.2750 41 1 9.3867 -11.2869 -5.7762 42 1 7.4008 -13.6000 -5.0401 43 1 7.9896 -13.1748 -6.7353 44 1 10.3819 -13.6082 -6.0134 45 1 9.7935 -14.0335 -4.3181 46 1 3.2703 -5.7079 0.1941 47 1 2.1485 -3.5262 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001422265040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:24 Heat of formation + Delta-G solvation = -66.347488 kcal Electronic energy + Delta-G solvation = -26724.331253 eV Core-core repulsion = 22680.426387 eV Total energy + Delta-G solvation = -4043.904866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 12.73 seconds Orbital eigenvalues (eV) -40.40845 -39.27937 -38.61682 -37.11517 -36.55853 -35.11139 -34.63009 -32.42496 -31.14428 -30.27021 -29.32079 -26.56540 -25.37588 -24.11900 -23.01269 -22.85645 -22.18045 -22.07406 -20.50854 -20.31097 -18.01481 -17.90069 -17.40059 -17.20028 -16.75262 -16.09041 -15.85783 -15.25888 -15.12748 -14.90162 -14.73901 -14.32107 -14.23431 -14.11234 -13.77007 -13.70885 -13.44697 -12.99762 -12.95446 -12.77530 -12.56709 -12.36406 -12.16895 -12.04023 -11.73293 -11.36826 -11.32681 -11.12708 -11.03718 -10.92201 -10.78438 -10.69005 -10.52877 -10.19765 -10.14204 -9.53264 -9.39839 -8.88737 -8.51033 -8.26688 -7.34619 -6.43000 -4.09656 2.07528 2.11407 2.15184 2.63510 3.21549 3.24318 3.37676 3.38806 3.84831 4.00549 4.20929 4.22338 4.30571 4.39608 4.44205 4.58560 4.63705 4.66794 4.78573 4.83245 5.00770 5.09672 5.11467 5.18424 5.23465 5.30850 5.33394 5.38384 5.45081 5.63460 5.63852 5.64831 5.73525 5.80172 5.95346 6.12341 6.32426 6.54932 6.77473 6.86208 7.03347 7.05964 7.15999 7.20783 7.30986 7.37662 7.59833 7.79002 7.80704 8.02393 8.92151 9.54361 10.64568 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.027353 B = 0.001511 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.391662 B =18527.394114 C =18770.357692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.217 6.217 10 C 0.162 3.838 11 C -0.193 4.193 12 C -0.070 4.070 13 C -0.179 4.179 14 C 0.117 3.883 15 N -0.680 5.680 16 C 0.030 3.970 17 C 0.097 3.903 18 H 0.117 0.883 19 O -0.555 6.555 20 C 0.088 3.912 21 N -0.719 5.719 22 C 0.542 3.458 23 O -0.544 6.544 24 C -0.197 4.197 25 C -0.152 4.152 26 C -0.148 4.148 27 C -0.050 4.050 28 C -0.222 4.222 29 H 0.279 0.721 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.349 0.651 35 H 0.033 0.967 36 H 0.083 0.917 37 H 0.374 0.626 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.408 0.592 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.469 -21.964 -7.830 29.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.110 3.890 11 C -0.213 4.213 12 C -0.089 4.089 13 C -0.180 4.180 14 C -0.011 4.011 15 N -0.312 5.312 16 C -0.101 4.101 17 C 0.037 3.963 18 H 0.135 0.865 19 O -0.360 6.360 20 C -0.037 4.037 21 N -0.371 5.371 22 C 0.328 3.672 23 O -0.421 6.421 24 C -0.218 4.218 25 C -0.190 4.190 26 C -0.185 4.185 27 C -0.069 4.069 28 C -0.242 4.242 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.168 0.832 35 H 0.051 0.949 36 H 0.101 0.899 37 H 0.221 0.779 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.243 0.757 41 H 0.143 0.857 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 17.385 -22.289 -7.684 29.293 hybrid contribution 1.258 1.229 0.406 1.805 sum 18.643 -21.060 -7.278 29.053 Atomic orbital electron populations 1.69648 1.05564 1.28496 1.47948 1.24471 0.95029 0.98823 0.95656 0.86176 0.80304 0.81432 0.78963 1.19874 1.20800 1.18385 1.20780 0.76873 0.96660 1.52213 0.87589 1.83567 1.22653 1.25829 1.80174 1.19145 0.91703 0.85513 0.92686 1.20160 0.91988 0.97783 1.11332 1.20472 0.98035 0.91545 0.98819 1.19156 0.93803 0.93193 1.11825 1.20645 0.97742 0.93958 0.88749 1.60492 1.48551 1.04010 1.18170 1.22529 0.97907 0.93898 0.95722 1.22262 0.92529 0.86282 0.95188 0.86543 1.86645 1.28354 1.66478 1.54519 1.22049 1.01202 0.96066 0.84348 1.45782 1.64523 1.17086 1.09701 1.19706 0.76484 0.81091 0.89889 1.90706 1.53392 1.55266 1.42767 1.22198 1.09064 0.94428 0.96102 1.22947 0.95156 0.99180 1.01667 1.22954 0.96215 0.95453 1.03914 1.20626 0.93464 0.96596 0.96172 1.21289 1.01163 0.91877 1.09835 0.91040 0.86614 0.87344 0.95338 0.91016 0.83193 0.94935 0.89892 0.77895 0.91158 0.90318 0.75713 0.85721 0.88204 0.87628 0.87835 0.87412 0.87199 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.29 13.96 55.48 0.77 -24.51 16 2 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 3 Si 0.91 21.59 28.62 -169.99 -4.86 16.72 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.39 -10.95 9.95 30.89 0.31 -10.64 16 8 H 0.11 3.04 5.44 -52.48 -0.29 2.76 16 9 O -0.22 -5.72 8.59 0.05 0.00 -5.72 16 10 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 11 C -0.19 -3.76 9.99 -39.39 -0.39 -4.16 16 12 C -0.07 -1.14 9.69 -39.61 -0.38 -1.52 16 13 C -0.18 -2.83 5.40 -104.57 -0.56 -3.40 16 14 C 0.12 1.42 5.81 -4.97 -0.03 1.40 16 15 N -0.68 -7.45 6.49 -115.06 -0.75 -8.19 16 16 C 0.03 0.23 5.36 -3.83 -0.02 0.21 16 17 C 0.10 0.67 3.29 -26.73 -0.09 0.58 16 18 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 19 O -0.56 -3.99 12.60 -35.23 -0.44 -4.43 16 20 C 0.09 0.61 5.34 -4.04 -0.02 0.58 16 21 N -0.72 -4.98 5.45 -60.29 -0.33 -5.31 16 22 C 0.54 4.82 7.61 -10.98 -0.08 4.74 16 23 O -0.54 -6.95 16.26 5.56 0.09 -6.86 16 24 C -0.20 -1.21 6.19 -91.76 -0.57 -1.77 16 25 C -0.15 -0.79 10.23 -26.75 -0.27 -1.07 16 26 C -0.15 -0.86 10.04 -26.75 -0.27 -1.13 16 27 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 28 C -0.22 -4.76 9.17 -39.40 -0.36 -5.12 16 29 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 31 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.35 3.97 8.28 -39.29 -0.33 3.64 16 35 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.37 1.65 9.05 45.56 0.41 2.06 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.41 2.21 8.35 -40.82 -0.34 1.87 16 41 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.11 0.80 7.67 -51.93 -0.40 0.40 16 46 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 47 H 0.13 2.99 5.64 -52.49 -0.30 2.70 16 LS Contribution 399.54 15.07 6.02 6.02 Total: -1.00 -32.53 399.54 -9.27 -41.80 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.28 Total: 7.94 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -3.49 Total: -17.45 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.30 Total: -38.02 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.35 Total: -17.01 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.86 Total: 16.72 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.53 -9.27 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422265040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.549 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.73 seconds