Wall clock time and date at job start Wed Apr 1 2020 00:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38105 * 119.92781 * 179.76650 * 11 10 9 13 13 C 1.38304 * 120.06646 * 0.48744 * 12 11 10 14 14 C 1.50707 * 119.92974 * 179.74714 * 13 12 11 15 15 N 1.46901 * 109.46748 * 270.01956 * 14 13 12 16 16 C 1.46900 * 110.99887 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.47200 * 180.02562 * 16 15 14 18 18 H 1.09006 * 109.47072 * 304.99820 * 17 16 15 19 19 O 1.42896 * 109.47532 * 65.00074 * 17 16 15 20 20 C 1.53004 * 109.47111 * 185.00391 * 17 16 15 21 21 N 1.46499 * 109.47168 * 179.97438 * 20 17 16 22 22 C 1.34775 * 120.00042 * 179.97438 * 21 20 17 23 23 O 1.21280 * 120.00234 * 0.02562 * 22 21 20 24 24 C 1.50709 * 119.99991 * 179.97438 * 22 21 20 25 25 C 1.53003 * 117.49584 * 248.62518 * 24 22 21 26 26 C 1.53002 * 117.49819 * 180.02562 * 24 22 21 27 27 C 1.38302 * 120.13995 * 359.76849 * 13 12 11 28 28 C 1.38101 * 120.06877 * 359.97438 * 27 13 12 29 29 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 31 31 H 1.07996 * 119.96589 * 180.23432 * 12 11 10 32 32 H 1.09002 * 109.47040 * 30.01809 * 14 13 12 33 33 H 1.08995 * 109.46954 * 150.02268 * 14 13 12 34 34 H 1.00909 * 111.00123 * 56.04710 * 15 14 13 35 35 H 1.09001 * 109.47160 * 300.00416 * 16 15 14 36 36 H 1.09001 * 109.47222 * 60.00052 * 16 15 14 37 37 H 0.96702 * 113.99591 * 59.99805 * 19 17 16 38 38 H 1.09001 * 109.46807 * 299.99221 * 20 17 16 39 39 H 1.09001 * 109.47465 * 59.99679 * 20 17 16 40 40 H 0.97003 * 120.00159 * 359.97438 * 21 20 17 41 41 H 1.08994 * 115.54703 * 34.33203 * 24 22 21 42 42 H 1.08994 * 117.49927 * 0.02562 * 25 24 22 43 43 H 1.08999 * 117.49411 * 145.02501 * 25 24 22 44 44 H 1.08994 * 117.49466 * 214.97791 * 26 24 22 45 45 H 1.09002 * 117.49464 * 359.97438 * 26 24 22 46 46 H 1.07999 * 119.96521 * 179.97438 * 27 13 12 47 47 H 1.07997 * 120.03156 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9791 -3.6994 0.3388 13 6 5.2293 -4.8615 0.3260 14 6 5.9134 -6.1991 0.4444 15 7 6.2548 -6.6948 -0.8957 16 6 6.9253 -7.9996 -0.8193 17 6 7.2650 -8.4819 -2.2309 18 1 6.3601 -8.4931 -2.8386 19 8 8.2224 -7.5987 -2.8186 20 6 7.8496 -9.8941 -2.1606 21 7 8.1743 -10.3561 -3.5123 22 6 8.7057 -11.5809 -3.6964 23 8 8.9146 -12.3009 -2.7430 24 6 9.0392 -12.0565 -5.0871 25 6 8.1966 -13.1952 -5.6653 26 6 9.6394 -13.4565 -5.2300 27 6 3.8530 -4.7987 0.2042 28 6 3.2232 -3.5745 0.0955 29 1 -0.4849 0.8401 0.0004 30 1 5.9419 -1.5655 0.2316 31 1 7.0536 -3.7518 0.4337 32 1 6.8234 -6.0908 1.0345 33 1 5.2448 -6.9070 0.9342 34 1 6.8217 -6.0259 -1.3951 35 1 7.8424 -7.9034 -0.2380 36 1 6.2641 -8.7203 -0.3380 37 1 9.0545 -7.5391 -2.3295 38 1 8.7545 -9.8828 -1.5530 39 1 7.1193 -10.5678 -1.7124 40 1 8.0068 -9.7805 -4.2750 41 1 9.3867 -11.2869 -5.7762 42 1 7.4008 -13.6000 -5.0401 43 1 7.9896 -13.1748 -6.7353 44 1 10.3819 -13.6082 -6.0134 45 1 9.7935 -14.0335 -4.3181 46 1 3.2703 -5.7079 0.1941 47 1 2.1485 -3.5262 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001422265040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:03 Heat of formation + Delta-G solvation = -91.771032 kcal Electronic energy + Delta-G solvation = -26725.433700 eV Core-core repulsion = 22680.426387 eV Total energy + Delta-G solvation = -4045.007314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 20.81 seconds Orbital eigenvalues (eV) -41.05731 -40.89211 -39.34506 -38.54872 -37.10079 -36.09482 -35.29134 -34.44349 -32.14787 -31.78897 -30.37382 -27.80594 -26.80394 -25.11641 -23.76754 -23.68167 -23.30286 -22.74426 -21.86719 -21.02354 -19.79983 -19.09240 -18.56555 -17.99398 -17.36591 -16.87829 -16.68577 -16.49099 -16.06906 -15.86410 -15.81959 -15.59118 -15.55313 -15.28821 -14.95003 -14.88375 -14.48803 -14.30252 -14.11048 -14.05095 -13.62752 -13.54752 -13.24077 -12.99227 -12.73413 -12.46441 -12.45412 -12.37268 -12.20531 -11.95695 -11.89256 -11.56130 -11.49440 -11.26660 -11.21044 -10.91647 -10.84604 -10.16916 -9.78854 -9.34589 -8.96681 -8.49802 -6.22528 0.58783 0.63075 1.31540 1.36055 1.43945 1.51719 2.06363 2.28157 2.73458 2.91384 3.01043 3.14640 3.33791 3.47672 3.71426 3.85465 3.92832 3.97599 4.01322 4.02952 4.08791 4.13699 4.19601 4.24688 4.43248 4.51617 4.60028 4.65570 4.70980 4.73596 4.77386 4.87773 4.92136 4.99607 5.02253 5.09943 5.21169 5.26950 5.36456 5.39484 5.57573 5.76674 5.83073 5.91882 6.08021 6.27036 6.48023 6.50379 6.77492 6.84473 7.18821 7.59008 8.61841 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.027353 B = 0.001511 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.391662 B =18527.394114 C =18770.357692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.079 0.921 9 O -0.246 6.246 10 C 0.119 3.881 11 C -0.193 4.193 12 C -0.060 4.060 13 C -0.151 4.151 14 C 0.121 3.879 15 N -0.692 5.692 16 C 0.033 3.967 17 C 0.113 3.887 18 H 0.107 0.893 19 O -0.565 6.565 20 C 0.092 3.908 21 N -0.709 5.709 22 C 0.535 3.465 23 O -0.590 6.590 24 C -0.201 4.201 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.055 4.055 28 C -0.240 4.240 29 H 0.285 0.715 30 H 0.128 0.872 31 H 0.154 0.846 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.348 0.652 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.387 0.613 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.417 0.583 41 H 0.150 0.850 42 H 0.087 0.913 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.085 0.915 46 H 0.130 0.870 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.801 -22.973 -8.460 32.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.070 3.930 11 C -0.212 4.212 12 C -0.079 4.079 13 C -0.152 4.152 14 C -0.008 4.008 15 N -0.324 5.324 16 C -0.097 4.097 17 C 0.053 3.947 18 H 0.124 0.876 19 O -0.372 6.372 20 C -0.032 4.032 21 N -0.360 5.360 22 C 0.323 3.677 23 O -0.471 6.471 24 C -0.222 4.222 25 C -0.182 4.182 26 C -0.191 4.191 27 C -0.074 4.074 28 C -0.259 4.259 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.171 0.829 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.167 0.833 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.236 0.764 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.254 0.746 41 H 0.168 0.832 42 H 0.105 0.895 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.103 0.897 46 H 0.148 0.852 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 20.746 -23.319 -8.328 32.304 hybrid contribution 0.432 1.192 0.619 1.411 sum 21.178 -22.127 -7.709 31.584 Atomic orbital electron populations 1.69734 1.06924 1.29582 1.50189 1.25293 0.95890 1.02174 0.95507 0.85198 0.78772 0.77336 0.79282 1.19070 1.19215 1.18672 1.20706 0.78162 0.96087 1.52665 0.90306 1.83507 1.21184 1.27548 1.83123 1.19712 0.93320 0.85013 0.94958 1.20510 0.90456 0.99889 1.10323 1.20963 1.00243 0.90093 0.96567 1.19689 0.92932 0.95420 1.07164 1.20633 0.98546 0.91630 0.89942 1.60390 1.49646 1.05091 1.17285 1.22553 0.98482 0.92255 0.96440 1.22005 0.92159 0.85984 0.94520 0.87565 1.86625 1.29143 1.66367 1.55064 1.21988 1.01001 0.95921 0.84333 1.45748 1.63467 1.16672 1.10151 1.20234 0.75844 0.81070 0.90563 1.90682 1.55507 1.56554 1.44404 1.22297 1.09726 0.95209 0.94933 1.23025 0.94375 0.98061 1.02722 1.22998 0.97359 0.95046 1.03702 1.20891 0.94925 0.95777 0.95768 1.21283 1.00107 0.93363 1.11161 0.90588 0.85410 0.82861 0.92961 0.90218 0.83276 0.93186 0.89566 0.76351 0.91107 0.91060 0.74631 0.83238 0.89492 0.85218 0.85648 0.89671 0.85219 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.55 13.96 21.61 0.30 -55.25 16 2 C 0.01 0.56 5.49 84.83 0.47 1.03 16 3 Si 0.97 45.64 28.62 68.60 1.96 47.60 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.40 -23.84 9.95 67.92 0.68 -23.16 16 8 H 0.08 4.94 5.44 -2.91 -0.02 4.93 16 9 O -0.25 -13.49 8.59 -22.72 -0.20 -13.68 16 10 C 0.12 5.59 6.65 22.58 0.15 5.74 16 11 C -0.19 -7.20 9.99 22.39 0.22 -6.98 16 12 C -0.06 -1.74 9.69 22.25 0.22 -1.52 16 13 C -0.15 -4.28 5.40 -19.83 -0.11 -4.39 16 14 C 0.12 2.38 5.81 85.56 0.50 2.88 16 15 N -0.69 -12.40 6.49 -517.93 -3.36 -15.76 16 16 C 0.03 0.39 5.36 86.30 0.46 0.85 16 17 C 0.11 1.25 3.29 30.59 0.10 1.35 16 18 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 19 O -0.57 -6.35 12.60 -148.98 -1.88 -8.22 16 20 C 0.09 1.10 5.34 86.38 0.46 1.56 16 21 N -0.71 -8.65 5.45 -463.05 -2.52 -11.17 16 22 C 0.53 9.01 7.61 87.66 0.67 9.68 16 23 O -0.59 -15.13 16.26 -3.03 -0.05 -15.18 16 24 C -0.20 -2.11 6.19 -11.53 -0.07 -2.18 16 25 C -0.14 -1.27 10.23 30.58 0.31 -0.96 16 26 C -0.15 -1.61 10.04 30.58 0.31 -1.30 16 27 C -0.06 -1.90 9.69 22.25 0.22 -1.69 16 28 C -0.24 -10.65 9.17 22.39 0.21 -10.45 16 29 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 32 H 0.05 0.84 8.08 -2.39 -0.02 0.83 16 33 H 0.08 1.52 8.08 -2.39 -0.02 1.50 16 34 H 0.35 6.44 8.28 -89.69 -0.74 5.69 16 35 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.39 2.07 9.05 -74.06 -0.67 1.40 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 40 H 0.42 3.60 8.35 -92.71 -0.77 2.82 16 41 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.08 1.29 7.67 -2.39 -0.02 1.27 16 46 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 47 H 0.10 5.16 5.64 -2.91 -0.02 5.14 16 Total: -1.00 -75.43 399.54 -2.13 -77.56 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -1.17 Total: 23.65 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 4.78 Total: -29.54 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -5.58 Total: -82.19 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -2.12 Total: -37.08 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.96 Total: 47.60 kcal Total: -75.43 -2.13 -77.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001422265040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.213 kcal (2) G-P(sol) polarization free energy of solvation -75.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.81 seconds