Wall clock time and date at job start Wed Apr 1 2020 00:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86801 * 120.00358 * 2 1 4 4 H 1.48494 * 109.47458 * 240.00463 * 3 2 1 5 5 H 1.48501 * 109.46888 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47222 * 120.00255 * 3 2 1 7 7 C 1.38655 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00103 * 179.97438 * 7 2 1 9 9 O 1.34838 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99965 * 185.05924 * 9 7 2 11 11 C 1.38885 * 120.06723 * 354.47063 * 10 9 7 12 12 C 1.38101 * 119.92667 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.07063 * 359.97438 * 12 11 10 14 14 C 1.50694 * 119.93324 * 180.02562 * 13 12 11 15 15 N 1.46500 * 109.47370 * 89.99124 * 14 13 12 16 16 C 1.34783 * 119.99869 * 179.97438 * 15 14 13 17 17 O 1.21581 * 119.99878 * 0.02562 * 16 15 14 18 18 N 1.34770 * 119.99852 * 180.02562 * 16 15 14 19 19 C 1.46502 * 120.00144 * 180.02562 * 18 16 15 20 20 H 1.08995 * 110.05390 * 33.58209 * 19 18 16 21 21 C 1.54268 * 110.03072 * 272.16492 * 19 18 16 22 22 C 1.54892 * 104.19722 * 217.10287 * 21 19 18 23 23 C 1.54889 * 102.74447 * 37.94466 * 22 21 19 24 24 C 1.53875 * 110.03402 * 155.00159 * 19 18 16 25 25 H 1.09002 * 110.07131 * 238.59298 * 24 19 18 26 26 C 1.52999 * 110.03420 * 359.97438 * 24 19 18 27 27 O 1.42898 * 109.47329 * 183.62484 * 26 24 19 28 28 C 1.38303 * 120.13614 * 0.28911 * 13 12 11 29 29 C 1.38099 * 120.06923 * 359.45568 * 28 13 12 30 30 H 0.96999 * 119.99389 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.03538 * 0.04263 * 11 10 9 32 32 H 1.07998 * 119.96209 * 179.97438 * 12 11 10 33 33 H 1.09008 * 109.46815 * 329.99817 * 14 13 12 34 34 H 1.09000 * 109.47723 * 209.99790 * 14 13 12 35 35 H 0.96995 * 119.99949 * 0.02562 * 15 14 13 36 36 H 0.97003 * 119.99740 * 0.02562 * 18 16 15 37 37 H 1.09000 * 110.48356 * 98.42565 * 21 19 18 38 38 H 1.09002 * 110.48871 * 335.78680 * 21 19 18 39 39 H 1.09001 * 110.75268 * 279.62985 * 22 21 19 40 40 H 1.08997 * 110.75464 * 156.25806 * 22 21 19 41 41 H 1.09006 * 110.48298 * 203.38129 * 23 22 21 42 42 H 1.08993 * 110.60110 * 80.79201 * 23 22 21 43 43 H 1.09000 * 109.47336 * 303.62460 * 26 24 19 44 44 H 1.09000 * 109.47002 * 63.62112 * 26 24 19 45 45 H 0.96696 * 114.00238 * 180.02562 * 27 26 24 46 46 H 1.08000 * 119.96333 * 179.70543 * 28 13 12 47 47 H 1.08003 * 120.03103 * 180.27139 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 3.4571 -3.4395 0.0923 12 6 4.2023 -4.5973 0.1999 13 6 3.5686 -5.8205 0.3214 14 6 4.3847 -7.0818 0.4392 15 7 4.6564 -7.3576 1.8521 16 6 5.3749 -8.4433 2.2008 17 8 5.7980 -9.1935 1.3427 18 7 5.6243 -8.6972 3.5006 19 6 6.4058 -9.8770 3.8797 20 1 7.1616 -10.0839 3.1221 21 6 5.4754 -11.0964 4.0448 22 6 6.0755 -11.8726 5.2433 23 6 6.5311 -10.7366 6.1925 24 6 7.0770 -9.6483 5.2453 25 1 8.1588 -9.7435 5.1511 26 6 6.7187 -8.2600 5.7795 27 8 7.4145 -8.0272 7.0057 28 6 2.1872 -5.8891 0.3295 29 6 1.4365 -4.7345 0.2275 30 1 -0.4849 0.8401 0.0004 31 1 3.9526 -2.4845 -0.0019 32 1 5.2811 -4.5473 0.1892 33 1 5.3271 -6.9559 -0.0941 34 1 3.8308 -7.9149 0.0063 35 1 4.3185 -6.7592 2.5367 36 1 5.2864 -8.0988 4.1852 37 1 5.4904 -11.7122 3.1455 38 1 4.4591 -10.7731 4.2699 39 1 6.9264 -12.4755 4.9260 40 1 5.3171 -12.4935 5.7201 41 1 7.3167 -11.0898 6.8606 42 1 5.6869 -10.3545 6.7662 43 1 7.0069 -7.5041 5.0490 44 1 5.6444 -8.2045 5.9551 45 1 7.2342 -7.1641 7.4025 46 1 1.6952 -6.8463 0.4197 47 1 0.3579 -4.7884 0.2383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434769454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:38 Heat of formation + Delta-G solvation = -87.594583 kcal Electronic energy + Delta-G solvation = -27793.281918 eV Core-core repulsion = 23748.455709 eV Total energy + Delta-G solvation = -4044.826209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.32 seconds Orbital eigenvalues (eV) -40.53052 -39.25911 -38.67043 -36.92055 -36.49944 -34.35075 -33.81571 -32.38200 -30.46201 -30.30849 -29.92061 -27.75837 -25.81933 -24.94609 -24.52764 -22.07854 -21.46369 -20.99047 -20.64875 -19.65420 -18.91671 -18.09631 -17.49843 -17.01500 -16.56089 -16.01088 -15.48116 -15.29125 -14.93197 -14.72224 -14.68904 -14.48419 -14.11194 -13.92967 -13.78095 -13.71168 -13.40662 -12.94220 -12.82473 -12.79928 -12.26305 -12.02722 -11.72494 -11.66979 -11.43287 -11.38926 -11.31814 -11.00177 -10.96762 -10.93639 -10.81688 -10.71882 -10.52646 -10.36310 -10.19507 -9.45843 -9.31157 -8.93466 -8.79409 -8.31112 -7.35797 -6.55364 -4.14425 1.99913 2.10488 2.79140 3.07107 3.07992 3.10888 3.21273 3.68768 3.88132 4.19635 4.21405 4.25573 4.54120 4.60759 4.83422 4.91583 4.99406 5.01087 5.12497 5.14963 5.19396 5.23031 5.29093 5.29984 5.42655 5.43865 5.62923 5.64659 5.73768 5.79926 5.82199 5.91421 5.93815 6.01390 6.09621 6.32925 6.38826 6.55089 6.59139 6.77708 6.85249 6.96122 7.13074 7.20586 7.25309 7.32612 7.68945 7.89163 8.00350 8.60425 8.89796 9.57827 10.62009 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017035 B = 0.002022 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.261890 B =13845.485927 C =14774.499838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.214 4.214 14 C 0.198 3.802 15 N -0.738 5.738 16 C 0.700 3.300 17 O -0.595 6.595 18 N -0.749 5.749 19 C 0.168 3.832 20 H 0.095 0.905 21 C -0.135 4.135 22 C -0.127 4.127 23 C -0.111 4.111 24 C -0.100 4.100 25 H 0.089 0.911 26 C 0.078 3.922 27 O -0.572 6.572 28 C -0.053 4.053 29 C -0.196 4.196 30 H 0.272 0.728 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.396 0.604 36 H 0.394 0.606 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.381 0.619 46 H 0.112 0.888 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.554 -16.770 11.924 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.216 4.216 14 C 0.075 3.925 15 N -0.393 5.393 16 C 0.400 3.600 17 O -0.473 6.473 18 N -0.407 5.407 19 C 0.062 3.938 20 H 0.114 0.886 21 C -0.174 4.174 22 C -0.165 4.165 23 C -0.149 4.149 24 C -0.119 4.119 25 H 0.107 0.893 26 C 0.000 4.000 27 O -0.377 6.377 28 C -0.072 4.072 29 C -0.215 4.215 30 H 0.082 0.918 31 H 0.146 0.854 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.230 0.770 36 H 0.231 0.769 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.228 0.772 46 H 0.130 0.870 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.721 -17.813 10.933 23.962 hybrid contribution -0.122 2.094 0.682 2.206 sum 11.599 -15.719 11.615 22.727 Atomic orbital electron populations 1.70026 1.06004 1.27997 1.45297 1.25321 0.95869 0.98942 0.96335 0.85761 0.78723 0.79604 0.79257 1.19408 1.20200 1.19452 1.21306 0.91834 0.80730 1.53141 0.88975 1.83980 1.34491 1.11555 1.77517 1.19442 0.90325 0.88054 0.91624 1.21160 0.93771 0.98951 1.11801 1.20647 0.98377 0.91622 0.96242 1.19223 0.93555 0.93647 1.15169 1.19827 0.98261 0.94581 0.79811 1.45526 1.57383 1.26767 1.09639 1.16060 0.79306 0.81808 0.82786 1.90903 1.57327 1.49982 1.49093 1.45504 1.59474 1.29481 1.06255 1.21441 0.93044 0.84197 0.95109 0.88648 1.22830 0.99322 0.96486 0.98779 1.22506 1.00645 0.97391 0.95909 1.22341 1.00753 0.94727 0.97061 1.22035 1.01555 0.94290 0.94042 0.89267 1.22244 0.94987 0.96773 0.86001 1.86466 1.71408 1.40918 1.38923 1.20539 0.92782 0.96809 0.97104 1.20218 0.99674 0.90254 1.11370 0.91809 0.85440 0.87406 0.91779 0.91728 0.77021 0.76931 0.90813 0.91088 0.91189 0.91242 0.91193 0.91391 0.92969 0.93497 0.77194 0.86959 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.44 13.67 55.48 0.76 -23.69 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.39 -10.60 9.49 30.89 0.29 -10.30 16 8 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 9 O -0.17 -4.74 9.76 0.03 0.00 -4.74 16 10 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 11 C -0.24 -4.83 9.17 -39.39 -0.36 -5.19 16 12 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 13 C -0.21 -3.36 5.25 -104.58 -0.55 -3.91 16 14 C 0.20 2.75 5.80 -5.20 -0.03 2.72 16 15 N -0.74 -9.02 5.55 -66.42 -0.37 -9.39 16 16 C 0.70 9.14 8.56 -86.92 -0.74 8.40 16 17 O -0.59 -10.05 16.00 5.29 0.08 -9.97 16 18 N -0.75 -7.09 4.41 -57.58 -0.25 -7.35 16 19 C 0.17 1.50 3.23 -66.81 -0.22 1.29 16 20 H 0.10 1.02 7.57 -51.93 -0.39 0.63 16 21 C -0.14 -1.14 6.53 -25.07 -0.16 -1.30 16 22 C -0.13 -0.84 6.91 -24.74 -0.17 -1.01 16 23 C -0.11 -0.76 6.20 -25.07 -0.16 -0.92 16 24 C -0.10 -0.75 3.19 -89.50 -0.29 -1.04 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 26 C 0.08 0.53 4.96 37.16 0.18 0.72 16 27 O -0.57 -4.23 13.48 -35.23 -0.47 -4.70 16 28 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 29 C -0.20 -3.88 9.99 -39.40 -0.39 -4.27 16 30 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.13 2.61 5.64 -52.49 -0.30 2.32 16 32 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 33 H 0.06 0.92 8.08 -51.92 -0.42 0.50 16 34 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.40 4.20 8.48 -40.82 -0.35 3.85 16 36 H 0.39 2.87 5.89 -40.82 -0.24 2.63 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.47 7.78 -51.93 -0.40 0.07 16 43 H 0.05 0.36 7.51 -51.93 -0.39 -0.03 16 44 H 0.05 0.27 7.06 -51.93 -0.37 -0.10 16 45 H 0.38 1.31 9.12 45.56 0.42 1.72 16 46 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 47 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 386.20 15.07 5.82 5.82 Total: -1.00 -32.55 386.20 -9.24 -41.80 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -6.07 Total: 10.38 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -3.72 Total: -12.94 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.14 Total: -40.42 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.39 Total: -19.41 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.55 -9.24 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434769454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.799 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.32 seconds