Wall clock time and date at job start Wed Apr 1 2020 00:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86801 * 120.00358 * 2 1 4 4 H 1.48494 * 109.47458 * 240.00463 * 3 2 1 5 5 H 1.48501 * 109.46888 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47222 * 120.00255 * 3 2 1 7 7 C 1.38655 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00103 * 179.97438 * 7 2 1 9 9 O 1.34838 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99965 * 185.05924 * 9 7 2 11 11 C 1.38885 * 120.06723 * 354.47063 * 10 9 7 12 12 C 1.38101 * 119.92667 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.07063 * 359.97438 * 12 11 10 14 14 C 1.50694 * 119.93324 * 180.02562 * 13 12 11 15 15 N 1.46500 * 109.47370 * 89.99124 * 14 13 12 16 16 C 1.34783 * 119.99869 * 179.97438 * 15 14 13 17 17 O 1.21581 * 119.99878 * 0.02562 * 16 15 14 18 18 N 1.34770 * 119.99852 * 180.02562 * 16 15 14 19 19 C 1.46502 * 120.00144 * 180.02562 * 18 16 15 20 20 H 1.08995 * 110.05390 * 33.58209 * 19 18 16 21 21 C 1.54268 * 110.03072 * 272.16492 * 19 18 16 22 22 C 1.54892 * 104.19722 * 217.10287 * 21 19 18 23 23 C 1.54889 * 102.74447 * 37.94466 * 22 21 19 24 24 C 1.53875 * 110.03402 * 155.00159 * 19 18 16 25 25 H 1.09002 * 110.07131 * 238.59298 * 24 19 18 26 26 C 1.52999 * 110.03420 * 359.97438 * 24 19 18 27 27 O 1.42898 * 109.47329 * 183.62484 * 26 24 19 28 28 C 1.38303 * 120.13614 * 0.28911 * 13 12 11 29 29 C 1.38099 * 120.06923 * 359.45568 * 28 13 12 30 30 H 0.96999 * 119.99389 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.03538 * 0.04263 * 11 10 9 32 32 H 1.07998 * 119.96209 * 179.97438 * 12 11 10 33 33 H 1.09008 * 109.46815 * 329.99817 * 14 13 12 34 34 H 1.09000 * 109.47723 * 209.99790 * 14 13 12 35 35 H 0.96995 * 119.99949 * 0.02562 * 15 14 13 36 36 H 0.97003 * 119.99740 * 0.02562 * 18 16 15 37 37 H 1.09000 * 110.48356 * 98.42565 * 21 19 18 38 38 H 1.09002 * 110.48871 * 335.78680 * 21 19 18 39 39 H 1.09001 * 110.75268 * 279.62985 * 22 21 19 40 40 H 1.08997 * 110.75464 * 156.25806 * 22 21 19 41 41 H 1.09006 * 110.48298 * 203.38129 * 23 22 21 42 42 H 1.08993 * 110.60110 * 80.79201 * 23 22 21 43 43 H 1.09000 * 109.47336 * 303.62460 * 26 24 19 44 44 H 1.09000 * 109.47002 * 63.62112 * 26 24 19 45 45 H 0.96696 * 114.00238 * 180.02562 * 27 26 24 46 46 H 1.08000 * 119.96333 * 179.70543 * 28 13 12 47 47 H 1.08003 * 120.03103 * 180.27139 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 3.4571 -3.4395 0.0923 12 6 4.2023 -4.5973 0.1999 13 6 3.5686 -5.8205 0.3214 14 6 4.3847 -7.0818 0.4392 15 7 4.6564 -7.3576 1.8521 16 6 5.3749 -8.4433 2.2008 17 8 5.7980 -9.1935 1.3427 18 7 5.6243 -8.6972 3.5006 19 6 6.4058 -9.8770 3.8797 20 1 7.1616 -10.0839 3.1221 21 6 5.4754 -11.0964 4.0448 22 6 6.0755 -11.8726 5.2433 23 6 6.5311 -10.7366 6.1925 24 6 7.0770 -9.6483 5.2453 25 1 8.1588 -9.7435 5.1511 26 6 6.7187 -8.2600 5.7795 27 8 7.4145 -8.0272 7.0057 28 6 2.1872 -5.8891 0.3295 29 6 1.4365 -4.7345 0.2275 30 1 -0.4849 0.8401 0.0004 31 1 3.9526 -2.4845 -0.0019 32 1 5.2811 -4.5473 0.1892 33 1 5.3271 -6.9559 -0.0941 34 1 3.8308 -7.9149 0.0063 35 1 4.3185 -6.7592 2.5367 36 1 5.2864 -8.0988 4.1852 37 1 5.4904 -11.7122 3.1455 38 1 4.4591 -10.7731 4.2699 39 1 6.9264 -12.4755 4.9260 40 1 5.3171 -12.4935 5.7201 41 1 7.3167 -11.0898 6.8606 42 1 5.6869 -10.3545 6.7662 43 1 7.0069 -7.5041 5.0490 44 1 5.6444 -8.2045 5.9551 45 1 7.2342 -7.1641 7.4025 46 1 1.6952 -6.8463 0.4197 47 1 0.3579 -4.7884 0.2383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434769454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:36 Heat of formation + Delta-G solvation = -111.335482 kcal Electronic energy + Delta-G solvation = -27794.311401 eV Core-core repulsion = 23748.455709 eV Total energy + Delta-G solvation = -4045.855692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.44753 -40.79814 -39.59067 -38.46091 -37.10054 -35.58909 -34.70092 -34.23712 -31.83900 -31.38150 -30.96539 -28.60879 -27.54350 -26.02597 -25.43587 -23.64084 -22.48405 -22.04754 -21.63488 -20.37290 -19.94683 -19.75850 -18.84767 -18.08760 -17.41460 -16.78415 -16.61479 -16.35369 -16.20636 -16.02990 -15.88178 -15.53639 -15.49442 -15.22790 -14.94104 -14.74917 -14.39288 -14.35625 -14.24256 -13.68768 -13.50756 -13.33599 -13.01919 -12.80547 -12.53427 -12.37848 -12.36214 -12.21053 -12.14408 -12.00173 -11.89158 -11.64412 -11.48446 -11.35220 -11.20181 -10.88161 -10.79792 -10.31748 -9.81887 -9.72826 -9.01672 -8.48094 -6.16372 0.53099 0.58184 1.35971 1.45257 1.51717 1.80958 2.17309 2.18032 2.80060 3.09415 3.18150 3.46912 3.48904 3.61584 3.63792 3.89055 4.04132 4.05738 4.18024 4.27558 4.35807 4.42568 4.47782 4.50612 4.55691 4.57450 4.69075 4.72611 4.75942 4.81604 4.85572 5.04623 5.06294 5.14553 5.17135 5.19727 5.27161 5.28946 5.44634 5.48416 5.53609 5.60651 5.69374 5.76232 6.00505 6.01498 6.16724 6.87868 6.96610 7.08707 7.60255 7.75893 8.74389 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017035 B = 0.002022 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.261890 B =13845.485927 C =14774.499838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.122 3.878 11 C -0.244 4.244 12 C -0.044 4.044 13 C -0.181 4.181 14 C 0.204 3.796 15 N -0.731 5.731 16 C 0.700 3.300 17 O -0.633 6.633 18 N -0.733 5.733 19 C 0.168 3.832 20 H 0.075 0.925 21 C -0.133 4.133 22 C -0.120 4.120 23 C -0.107 4.107 24 C -0.097 4.097 25 H 0.083 0.917 26 C 0.078 3.922 27 O -0.588 6.588 28 C -0.042 4.042 29 C -0.205 4.205 30 H 0.273 0.727 31 H 0.120 0.880 32 H 0.139 0.861 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.407 0.593 36 H 0.408 0.592 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.061 0.939 45 H 0.397 0.603 46 H 0.147 0.853 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.579 -18.251 13.277 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.071 3.929 11 C -0.263 4.263 12 C -0.063 4.063 13 C -0.182 4.182 14 C 0.081 3.919 15 N -0.386 5.386 16 C 0.400 3.600 17 O -0.515 6.515 18 N -0.391 5.391 19 C 0.062 3.938 20 H 0.094 0.906 21 C -0.172 4.172 22 C -0.158 4.158 23 C -0.144 4.144 24 C -0.116 4.116 25 H 0.102 0.898 26 C 0.000 4.000 27 O -0.396 6.396 28 C -0.061 4.061 29 C -0.224 4.224 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.156 0.844 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.242 0.758 36 H 0.246 0.754 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.247 0.753 46 H 0.164 0.836 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.775 -19.327 12.341 26.750 hybrid contribution -0.596 2.155 0.313 2.257 sum 13.179 -17.172 12.654 25.074 Atomic orbital electron populations 1.70173 1.08011 1.28913 1.48523 1.26582 0.96832 1.02762 0.95817 0.84661 0.77399 0.74327 0.79952 1.18251 1.19802 1.18041 1.21788 0.92563 0.81332 1.53288 0.87896 1.83951 1.36047 1.12661 1.80828 1.19998 0.91643 0.87951 0.93265 1.21245 0.92988 1.00070 1.11994 1.20935 0.99787 0.90701 0.94868 1.19483 0.93426 0.94097 1.11200 1.19703 0.98032 0.93314 0.80880 1.45247 1.57335 1.26874 1.09193 1.16140 0.79033 0.81431 0.83383 1.90888 1.58856 1.51268 1.50474 1.45368 1.58708 1.29684 1.05365 1.21451 0.92740 0.84204 0.95372 0.90636 1.22779 0.99249 0.96212 0.98969 1.22483 1.00956 0.97332 0.95057 1.22311 1.00864 0.94404 0.96856 1.21980 1.01058 0.95317 0.93251 0.89838 1.22225 0.95742 0.96046 0.85968 1.86421 1.71728 1.42442 1.39033 1.20876 0.93070 0.96945 0.95192 1.20447 1.00074 0.90402 1.11478 0.91810 0.86175 0.84359 0.91494 0.91244 0.75779 0.75353 0.92231 0.91083 0.90850 0.90200 0.91015 0.91033 0.93113 0.92081 0.75274 0.83556 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.02 13.67 21.61 0.30 -54.73 16 2 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 3 Si 1.02 41.45 29.55 68.60 2.03 43.48 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.41 -23.22 9.49 67.92 0.64 -22.57 16 8 H 0.10 5.25 5.20 -2.91 -0.02 5.23 16 9 O -0.23 -13.24 9.76 -22.81 -0.22 -13.46 16 10 C 0.12 5.74 6.65 22.58 0.15 5.89 16 11 C -0.24 -9.83 9.17 22.39 0.21 -9.62 16 12 C -0.04 -1.38 9.69 22.25 0.22 -1.17 16 13 C -0.18 -5.06 5.25 -19.84 -0.10 -5.16 16 14 C 0.20 4.90 5.80 85.63 0.50 5.39 16 15 N -0.73 -15.33 5.55 -482.30 -2.68 -18.01 16 16 C 0.70 16.51 8.56 179.05 1.53 18.05 16 17 O -0.63 -20.30 16.00 -3.97 -0.06 -20.36 16 18 N -0.73 -12.12 4.41 -454.36 -2.00 -14.12 16 19 C 0.17 2.74 3.23 45.72 0.15 2.89 16 20 H 0.08 1.57 7.57 -2.39 -0.02 1.55 16 21 C -0.13 -2.03 6.53 31.67 0.21 -1.82 16 22 C -0.12 -1.36 6.91 31.89 0.22 -1.14 16 23 C -0.11 -1.22 6.20 31.67 0.20 -1.02 16 24 C -0.10 -1.26 3.19 -10.07 -0.03 -1.30 16 25 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 26 C 0.08 0.87 4.96 71.98 0.36 1.22 16 27 O -0.59 -7.29 13.48 -148.98 -2.01 -9.30 16 28 C -0.04 -1.28 9.69 22.25 0.22 -1.06 16 29 C -0.20 -8.07 9.99 22.39 0.22 -7.85 16 30 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.12 4.96 5.64 -2.91 -0.02 4.95 16 32 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.07 1.65 8.08 -2.38 -0.02 1.64 16 34 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 35 H 0.41 7.04 8.48 -92.71 -0.79 6.26 16 36 H 0.41 4.67 5.89 -92.71 -0.55 4.12 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.08 8.05 -2.39 -0.02 1.06 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.07 0.79 7.78 -2.39 -0.02 0.77 16 43 H 0.05 0.57 7.51 -2.39 -0.02 0.56 16 44 H 0.06 0.50 7.06 -2.39 -0.02 0.48 16 45 H 0.40 1.76 9.12 -74.06 -0.68 1.08 16 46 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 47 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -74.69 386.20 -0.50 -75.19 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -0.99 Total: 31.34 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 5.14 Total: -20.01 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -4.39 Total: -86.86 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -2.29 Total: -43.13 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -74.69 -0.50 -75.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434769454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.150 kcal (2) G-P(sol) polarization free energy of solvation -74.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds