Wall clock time and date at job start Wed Apr 1 2020 00:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86793 * 119.99958 * 2 1 4 4 H 1.48505 * 109.47380 * 269.99762 * 3 2 1 5 5 H 1.48498 * 109.47438 * 30.00418 * 3 2 1 6 6 H 1.48505 * 109.46978 * 150.00289 * 3 2 1 7 7 C 1.38653 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99814 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00103 * 179.97438 * 7 2 1 10 10 C 1.35750 * 117.00046 * 185.05462 * 9 7 2 11 11 C 1.38880 * 120.07071 * 354.46999 * 10 9 7 12 12 C 1.38098 * 119.93124 * 180.02562 * 11 10 9 13 13 C 1.38298 * 120.07085 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.93186 * 179.97438 * 13 12 11 15 15 N 1.46897 * 109.47362 * 89.99494 * 14 13 12 16 16 C 1.46903 * 110.99854 * 179.97438 * 15 14 13 17 17 H 1.08996 * 109.47516 * 35.00191 * 16 15 14 18 18 C 1.53001 * 109.47298 * 275.00034 * 16 15 14 19 19 O 1.42905 * 109.47127 * 295.00321 * 18 16 15 20 20 C 1.53003 * 109.47017 * 155.00124 * 16 15 14 21 21 N 1.46497 * 109.47331 * 305.00285 * 20 16 15 22 22 C 1.34775 * 120.00333 * 179.97438 * 21 20 16 23 23 O 1.21276 * 119.99941 * 0.02562 * 22 21 20 24 24 C 1.50698 * 120.00293 * 179.97438 * 22 21 20 25 25 C 1.52999 * 117.50374 * 248.75476 * 24 22 21 26 26 C 1.53000 * 117.50198 * 180.08798 * 24 22 21 27 27 C 1.38307 * 120.13701 * 0.24689 * 13 12 11 28 28 C 1.38098 * 120.06744 * 359.45497 * 27 13 12 29 29 H 0.97004 * 120.00144 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.03057 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.96673 * 179.97438 * 12 11 10 32 32 H 1.09005 * 109.47176 * 329.99731 * 14 13 12 33 33 H 1.08999 * 109.47426 * 209.99704 * 14 13 12 34 34 H 1.00902 * 111.00047 * 56.04889 * 15 14 13 35 35 H 1.09001 * 109.47323 * 175.00500 * 18 16 15 36 36 H 1.08997 * 109.47144 * 54.99628 * 18 16 15 37 37 H 0.96696 * 113.99986 * 180.02562 * 19 18 16 38 38 H 1.09010 * 109.47053 * 65.00033 * 20 16 15 39 39 H 1.08995 * 109.47363 * 184.99984 * 20 16 15 40 40 H 0.97000 * 119.99941 * 359.97438 * 21 20 16 41 41 H 1.09002 * 115.54356 * 34.41809 * 24 22 21 42 42 H 1.08999 * 117.49807 * 359.97438 * 25 24 22 43 43 H 1.08994 * 117.50163 * 145.01872 * 25 24 22 44 44 H 1.08996 * 117.49837 * 214.98176 * 26 24 22 45 45 H 1.09000 * 117.49531 * 359.97438 * 26 24 22 46 46 H 1.07992 * 119.96454 * 179.70740 * 27 13 12 47 47 H 1.07995 * 120.03533 * 180.26796 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4687 -2.1361 -0.0014 9 8 3.3571 -1.2008 -0.0011 10 6 3.9733 -2.4056 -0.1081 11 6 3.2233 -3.5744 -0.0952 12 6 3.8532 -4.7986 -0.2038 13 6 5.2295 -4.8614 -0.3248 14 6 5.9137 -6.1989 -0.4425 15 7 6.0175 -6.5729 -1.8593 16 6 6.6814 -7.8743 -2.0129 17 1 6.4053 -8.5235 -1.1820 18 6 8.1984 -7.6751 -2.0221 19 8 8.5727 -6.9210 -3.1768 20 6 6.2435 -8.5178 -3.3301 21 7 4.7814 -8.5995 -3.3715 22 6 4.1664 -9.1342 -4.4449 23 8 4.8234 -9.5483 -5.3764 24 6 2.6624 -9.2187 -4.4872 25 6 2.0304 -10.6099 -4.4103 26 6 2.0243 -9.8381 -5.7322 27 6 5.9797 -3.6995 -0.3323 28 6 5.3552 -2.4720 -0.2303 29 1 -0.4850 0.8401 0.0004 30 1 2.1487 -3.5260 0.0005 31 1 3.2706 -5.7079 -0.1934 32 1 5.3332 -6.9521 0.0905 33 1 6.9119 -6.1359 -0.0093 34 1 6.4958 -5.8587 -2.3876 35 1 8.6923 -8.6464 -2.0468 36 1 8.4996 -7.1369 -1.1234 37 1 9.5230 -6.7565 -3.2481 38 1 6.5975 -7.9132 -4.1653 39 1 6.6656 -9.5201 -3.4028 40 1 4.2559 -8.2686 -2.6263 41 1 2.1318 -8.3976 -4.0052 42 1 2.7025 -11.4642 -4.3295 43 1 1.0838 -10.7040 -3.8782 44 1 1.0737 -9.4247 -6.0691 45 1 2.6924 -10.1841 -6.5209 46 1 7.0546 -3.7521 -0.4222 47 1 5.9411 -1.5649 -0.2406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001441659249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:52 Heat of formation + Delta-G solvation = -62.614653 kcal Electronic energy + Delta-G solvation = -27915.721571 eV Core-core repulsion = 23871.978572 eV Total energy + Delta-G solvation = -4043.742998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.03560 -39.31098 -38.48820 -36.93345 -36.35932 -35.49510 -34.08468 -32.43612 -31.10028 -30.28602 -28.53040 -26.60876 -25.62191 -24.08602 -23.46302 -22.61952 -22.14122 -21.11243 -20.44039 -19.97842 -17.97199 -17.89977 -17.51917 -17.28376 -16.48231 -15.78942 -15.56696 -15.32865 -14.95075 -14.73042 -14.55718 -14.39654 -14.09037 -13.89831 -13.80619 -13.66244 -13.30501 -12.91939 -12.66634 -12.63939 -12.48418 -12.26667 -12.11461 -11.80465 -11.73893 -11.53926 -11.29577 -10.81298 -10.78150 -10.77266 -10.73034 -10.68009 -10.38868 -10.17269 -9.90126 -9.41996 -9.05399 -8.89965 -8.52045 -8.29095 -7.36491 -6.44551 -4.11220 2.09449 2.13195 2.45378 3.08600 3.19876 3.23970 3.37876 3.69056 3.77030 4.16513 4.21151 4.50471 4.54331 4.57899 4.61264 4.70095 4.75970 4.82192 4.97339 5.01670 5.07552 5.08378 5.17259 5.23377 5.36503 5.37674 5.53679 5.59639 5.61927 5.68795 5.74670 5.76869 5.88316 5.92510 6.09706 6.29940 6.41122 6.52626 6.75000 6.85791 7.02085 7.17182 7.23226 7.28281 7.37370 7.53531 7.57813 7.76907 8.00663 8.22369 8.90673 9.52733 10.63010 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010524 B = 0.002596 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.038177 B =10781.621223 C =12761.923669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.217 6.217 10 C 0.162 3.838 11 C -0.222 4.222 12 C -0.050 4.050 13 C -0.178 4.178 14 C 0.115 3.885 15 N -0.676 5.676 16 C 0.075 3.925 17 H 0.093 0.907 18 C 0.047 3.953 19 O -0.566 6.566 20 C 0.136 3.864 21 N -0.709 5.709 22 C 0.541 3.459 23 O -0.552 6.552 24 C -0.194 4.194 25 C -0.155 4.155 26 C -0.149 4.149 27 C -0.069 4.069 28 C -0.193 4.193 29 H 0.280 0.720 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.028 0.972 34 H 0.356 0.644 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.381 0.619 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.409 0.591 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.324 -19.085 -3.246 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.110 3.890 11 C -0.242 4.242 12 C -0.069 4.069 13 C -0.179 4.179 14 C -0.013 4.013 15 N -0.308 5.308 16 C -0.036 4.036 17 H 0.111 0.889 18 C -0.033 4.033 19 O -0.371 6.371 20 C 0.012 3.988 21 N -0.360 5.360 22 C 0.328 3.672 23 O -0.430 6.430 24 C -0.215 4.215 25 C -0.192 4.192 26 C -0.186 4.186 27 C -0.088 4.088 28 C -0.213 4.213 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.127 0.873 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.176 0.824 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.228 0.772 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.244 0.756 41 H 0.144 0.856 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.405 -19.277 -3.998 22.752 hybrid contribution 1.429 1.252 0.813 2.066 sum 12.833 -18.025 -3.185 22.355 Atomic orbital electron populations 1.69644 1.05571 1.28531 1.47889 1.24467 0.95027 0.98839 0.95638 0.86184 0.80301 0.81434 0.78996 1.19849 1.20768 1.18399 1.20770 0.76857 0.96643 1.52257 0.87592 1.83571 1.22659 1.25834 1.80120 1.19142 0.91696 0.85530 0.92672 1.21280 1.01117 0.91898 1.09871 1.20595 0.93330 0.96578 0.96394 1.19126 0.93806 0.93288 1.11684 1.20708 0.97692 0.94731 0.88158 1.60607 1.55724 1.03811 1.10697 1.21961 0.90116 0.93335 0.98196 0.88865 1.22820 0.96795 0.95338 0.88329 1.86490 1.29396 1.76088 1.45129 1.21195 0.80135 0.99709 0.97779 1.45714 1.07554 1.61977 1.20765 1.19634 0.88655 0.77026 0.81934 1.90672 1.66907 1.48940 1.36507 1.22220 0.92800 0.99691 1.06754 1.22930 1.02196 0.92920 1.01158 1.22948 1.02102 1.02152 0.91426 1.20464 0.98058 0.91542 0.98712 1.20165 0.91997 0.97781 1.11329 0.91016 0.84993 0.87253 0.91045 0.95374 0.82365 0.93120 0.93089 0.77181 0.90433 0.91863 0.75581 0.85590 0.88475 0.87798 0.87910 0.87546 0.87419 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.16 13.96 55.48 0.77 -24.38 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.50 28.62 -169.99 -4.86 16.64 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.39 -10.85 9.95 30.89 0.31 -10.54 16 8 H 0.11 3.01 5.44 -52.48 -0.29 2.72 16 9 O -0.22 -5.65 8.59 0.05 0.00 -5.65 16 10 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 11 C -0.22 -4.62 9.17 -39.40 -0.36 -4.98 16 12 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 13 C -0.18 -2.66 5.40 -104.58 -0.56 -3.23 16 14 C 0.12 1.27 5.61 -4.98 -0.03 1.24 16 15 N -0.68 -7.11 5.68 -107.99 -0.61 -7.72 16 16 C 0.07 0.63 2.57 -67.71 -0.17 0.45 16 17 H 0.09 0.66 7.80 -51.93 -0.41 0.26 16 18 C 0.05 0.33 6.72 37.16 0.25 0.58 16 19 O -0.57 -4.60 12.05 -35.23 -0.42 -5.02 16 20 C 0.14 1.41 5.26 -4.04 -0.02 1.39 16 21 N -0.71 -7.60 5.39 -60.29 -0.32 -7.92 16 22 C 0.54 6.79 7.61 -10.99 -0.08 6.71 16 23 O -0.55 -8.88 16.26 5.56 0.09 -8.79 16 24 C -0.19 -1.92 6.19 -91.77 -0.57 -2.49 16 25 C -0.15 -1.26 10.24 -26.69 -0.27 -1.53 16 26 C -0.15 -1.37 10.05 -26.69 -0.27 -1.64 16 27 C -0.07 -1.09 9.69 -39.61 -0.38 -1.48 16 28 C -0.19 -3.71 9.99 -39.39 -0.39 -4.10 16 29 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 31 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.07 0.72 8.00 -51.93 -0.42 0.31 16 33 H 0.03 0.28 7.30 -51.93 -0.38 -0.10 16 34 H 0.36 4.31 7.93 -39.29 -0.31 4.00 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.05 0.34 7.35 -51.93 -0.38 -0.04 16 37 H 0.38 1.54 9.12 45.56 0.42 1.95 16 38 H 0.08 1.00 7.39 -51.92 -0.38 0.61 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.41 3.91 8.14 -40.82 -0.33 3.58 16 41 H 0.13 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.11 1.12 7.67 -51.93 -0.40 0.72 16 46 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 47 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -32.44 395.24 -8.82 -41.26 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.11 Total: 11.42 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -3.30 Total: -15.79 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: -0.16 Total: -40.02 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.33 Total: -19.46 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.86 Total: 16.64 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.44 -8.82 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001441659249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.353 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds