Wall clock time and date at job start Wed Apr 1 2020 00:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86793 * 119.99958 * 2 1 4 4 H 1.48505 * 109.47380 * 269.99762 * 3 2 1 5 5 H 1.48498 * 109.47438 * 30.00418 * 3 2 1 6 6 H 1.48505 * 109.46978 * 150.00289 * 3 2 1 7 7 C 1.38653 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99814 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00103 * 179.97438 * 7 2 1 10 10 C 1.35750 * 117.00046 * 185.05462 * 9 7 2 11 11 C 1.38880 * 120.07071 * 354.46999 * 10 9 7 12 12 C 1.38098 * 119.93124 * 180.02562 * 11 10 9 13 13 C 1.38298 * 120.07085 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.93186 * 179.97438 * 13 12 11 15 15 N 1.46897 * 109.47362 * 89.99494 * 14 13 12 16 16 C 1.46903 * 110.99854 * 179.97438 * 15 14 13 17 17 H 1.08996 * 109.47516 * 35.00191 * 16 15 14 18 18 C 1.53001 * 109.47298 * 275.00034 * 16 15 14 19 19 O 1.42905 * 109.47127 * 295.00321 * 18 16 15 20 20 C 1.53003 * 109.47017 * 155.00124 * 16 15 14 21 21 N 1.46497 * 109.47331 * 305.00285 * 20 16 15 22 22 C 1.34775 * 120.00333 * 179.97438 * 21 20 16 23 23 O 1.21276 * 119.99941 * 0.02562 * 22 21 20 24 24 C 1.50698 * 120.00293 * 179.97438 * 22 21 20 25 25 C 1.52999 * 117.50374 * 248.75476 * 24 22 21 26 26 C 1.53000 * 117.50198 * 180.08798 * 24 22 21 27 27 C 1.38307 * 120.13701 * 0.24689 * 13 12 11 28 28 C 1.38098 * 120.06744 * 359.45497 * 27 13 12 29 29 H 0.97004 * 120.00144 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.03057 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.96673 * 179.97438 * 12 11 10 32 32 H 1.09005 * 109.47176 * 329.99731 * 14 13 12 33 33 H 1.08999 * 109.47426 * 209.99704 * 14 13 12 34 34 H 1.00902 * 111.00047 * 56.04889 * 15 14 13 35 35 H 1.09001 * 109.47323 * 175.00500 * 18 16 15 36 36 H 1.08997 * 109.47144 * 54.99628 * 18 16 15 37 37 H 0.96696 * 113.99986 * 180.02562 * 19 18 16 38 38 H 1.09010 * 109.47053 * 65.00033 * 20 16 15 39 39 H 1.08995 * 109.47363 * 184.99984 * 20 16 15 40 40 H 0.97000 * 119.99941 * 359.97438 * 21 20 16 41 41 H 1.09002 * 115.54356 * 34.41809 * 24 22 21 42 42 H 1.08999 * 117.49807 * 359.97438 * 25 24 22 43 43 H 1.08994 * 117.50163 * 145.01872 * 25 24 22 44 44 H 1.08996 * 117.49837 * 214.98176 * 26 24 22 45 45 H 1.09000 * 117.49531 * 359.97438 * 26 24 22 46 46 H 1.07992 * 119.96454 * 179.70740 * 27 13 12 47 47 H 1.07995 * 120.03533 * 180.26796 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4687 -2.1361 -0.0014 9 8 3.3571 -1.2008 -0.0011 10 6 3.9733 -2.4056 -0.1081 11 6 3.2233 -3.5744 -0.0952 12 6 3.8532 -4.7986 -0.2038 13 6 5.2295 -4.8614 -0.3248 14 6 5.9137 -6.1989 -0.4425 15 7 6.0175 -6.5729 -1.8593 16 6 6.6814 -7.8743 -2.0129 17 1 6.4053 -8.5235 -1.1820 18 6 8.1984 -7.6751 -2.0221 19 8 8.5727 -6.9210 -3.1768 20 6 6.2435 -8.5178 -3.3301 21 7 4.7814 -8.5995 -3.3715 22 6 4.1664 -9.1342 -4.4449 23 8 4.8234 -9.5483 -5.3764 24 6 2.6624 -9.2187 -4.4872 25 6 2.0304 -10.6099 -4.4103 26 6 2.0243 -9.8381 -5.7322 27 6 5.9797 -3.6995 -0.3323 28 6 5.3552 -2.4720 -0.2303 29 1 -0.4850 0.8401 0.0004 30 1 2.1487 -3.5260 0.0005 31 1 3.2706 -5.7079 -0.1934 32 1 5.3332 -6.9521 0.0905 33 1 6.9119 -6.1359 -0.0093 34 1 6.4958 -5.8587 -2.3876 35 1 8.6923 -8.6464 -2.0468 36 1 8.4996 -7.1369 -1.1234 37 1 9.5230 -6.7565 -3.2481 38 1 6.5975 -7.9132 -4.1653 39 1 6.6656 -9.5201 -3.4028 40 1 4.2559 -8.2686 -2.6263 41 1 2.1318 -8.3976 -4.0052 42 1 2.7025 -11.4642 -4.3295 43 1 1.0838 -10.7040 -3.8782 44 1 1.0737 -9.4247 -6.0691 45 1 2.6924 -10.1841 -6.5209 46 1 7.0546 -3.7521 -0.4222 47 1 5.9411 -1.5649 -0.2406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001441659249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:50 Heat of formation + Delta-G solvation = -87.894116 kcal Electronic energy + Delta-G solvation = -27916.817770 eV Core-core repulsion = 23871.978572 eV Total energy + Delta-G solvation = -4044.839198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.98893 -40.83560 -39.37054 -38.32657 -37.10103 -36.32269 -35.11717 -34.41239 -32.19789 -31.75932 -29.70315 -27.46685 -27.25101 -25.25042 -24.32553 -23.66300 -23.29827 -21.93329 -21.81054 -20.84060 -19.79239 -19.08716 -18.53450 -18.32758 -17.33168 -16.71759 -16.65129 -16.43004 -16.19008 -15.77662 -15.67120 -15.60481 -15.39045 -15.33644 -15.06575 -14.61515 -14.34685 -14.29274 -14.17173 -14.04916 -13.48401 -13.44411 -13.21352 -12.97610 -12.62359 -12.43745 -12.42947 -12.38396 -12.23711 -12.07102 -11.83654 -11.53499 -11.42527 -11.25298 -10.96003 -10.89073 -10.84198 -9.98317 -9.76038 -9.33216 -8.94336 -8.49547 -6.21653 0.61488 0.66089 1.31039 1.35050 1.51232 1.53119 2.26159 2.27926 2.73997 2.93969 3.00717 3.16015 3.29826 3.62005 3.78947 3.86209 3.89770 4.00971 4.04156 4.10106 4.16180 4.22767 4.28515 4.40020 4.48476 4.56221 4.62072 4.65938 4.73832 4.77816 4.80010 4.91712 4.93679 5.02555 5.03980 5.05585 5.22831 5.29793 5.41008 5.53515 5.60091 5.79004 5.85411 5.93733 6.11738 6.29770 6.44960 6.64937 6.85245 6.90752 7.31348 7.60827 8.62134 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010524 B = 0.002596 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.038177 B =10781.621223 C =12761.923669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.398 4.398 8 H 0.081 0.919 9 O -0.248 6.248 10 C 0.118 3.882 11 C -0.239 4.239 12 C -0.051 4.051 13 C -0.148 4.148 14 C 0.120 3.880 15 N -0.684 5.684 16 C 0.082 3.918 17 H 0.116 0.884 18 C 0.049 3.951 19 O -0.589 6.589 20 C 0.138 3.862 21 N -0.700 5.700 22 C 0.533 3.467 23 O -0.596 6.596 24 C -0.205 4.205 25 C -0.136 4.136 26 C -0.157 4.157 27 C -0.062 4.062 28 C -0.196 4.196 29 H 0.284 0.716 30 H 0.105 0.895 31 H 0.138 0.862 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.348 0.652 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.397 0.603 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.416 0.584 41 H 0.139 0.861 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.087 0.913 46 H 0.149 0.851 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.861 -20.917 -2.428 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.474 4.474 8 H 0.099 0.901 9 O -0.156 6.156 10 C 0.069 3.931 11 C -0.259 4.259 12 C -0.070 4.070 13 C -0.149 4.149 14 C -0.008 4.008 15 N -0.316 5.316 16 C -0.028 4.028 17 H 0.134 0.866 18 C -0.031 4.031 19 O -0.398 6.398 20 C 0.014 3.986 21 N -0.350 5.350 22 C 0.321 3.679 23 O -0.478 6.478 24 C -0.226 4.226 25 C -0.173 4.173 26 C -0.194 4.194 27 C -0.080 4.080 28 C -0.215 4.215 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.155 0.845 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.167 0.833 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.247 0.753 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.253 0.747 41 H 0.157 0.843 42 H 0.112 0.888 43 H 0.146 0.854 44 H 0.138 0.862 45 H 0.105 0.895 46 H 0.167 0.833 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.982 -21.144 -3.151 25.544 hybrid contribution 0.877 1.460 0.503 1.775 sum 14.858 -19.684 -2.649 24.804 Atomic orbital electron populations 1.69728 1.06866 1.29537 1.50343 1.25263 0.95871 1.02095 0.95645 0.85231 0.78810 0.77560 0.79192 1.19247 1.19192 1.18740 1.20705 0.78155 0.96080 1.52447 0.90107 1.83512 1.21195 1.27687 1.83181 1.19717 0.93258 0.85122 0.95014 1.21299 1.00081 0.93397 1.11092 1.20919 0.94685 0.95898 0.95467 1.19675 0.93001 0.95413 1.06814 1.20733 0.98779 0.92445 0.88833 1.60495 1.56555 1.04453 1.10113 1.21974 0.91160 0.92176 0.97523 0.86618 1.22830 0.95542 0.96296 0.88419 1.86457 1.31140 1.76364 1.45802 1.21174 0.79794 0.99511 0.98126 1.45715 1.07915 1.60973 1.20408 1.20141 0.89767 0.76408 0.81628 1.90648 1.68038 1.50991 1.38086 1.22274 0.91195 1.01369 1.07789 1.23025 1.02711 0.91550 1.00006 1.22999 1.02379 1.02772 0.91296 1.20943 1.00150 0.90284 0.96649 1.20491 0.90575 0.99820 1.10654 0.90618 0.87694 0.84468 0.89088 0.92936 0.83261 0.91550 0.91816 0.75310 0.93284 0.91655 0.74700 0.84341 0.88841 0.85360 0.86197 0.89453 0.83346 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.29 13.96 21.61 0.30 -54.98 16 2 C 0.01 0.55 5.49 84.83 0.47 1.02 16 3 Si 0.97 45.62 28.62 68.60 1.96 47.58 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.40 -23.45 9.95 67.92 0.68 -22.77 16 8 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 9 O -0.25 -13.48 8.59 -22.73 -0.20 -13.68 16 10 C 0.12 5.43 6.65 22.58 0.15 5.58 16 11 C -0.24 -10.19 9.17 22.39 0.21 -9.99 16 12 C -0.05 -1.62 9.69 22.25 0.22 -1.41 16 13 C -0.15 -3.85 5.40 -19.84 -0.11 -3.96 16 14 C 0.12 1.98 5.61 85.56 0.48 2.46 16 15 N -0.68 -11.59 5.68 -495.58 -2.82 -14.40 16 16 C 0.08 1.05 2.57 44.92 0.12 1.17 16 17 H 0.12 1.03 7.80 -2.39 -0.02 1.01 16 18 C 0.05 0.49 6.72 71.98 0.48 0.97 16 19 O -0.59 -7.95 12.05 -148.98 -1.80 -9.74 16 20 C 0.14 2.60 5.26 86.38 0.45 3.06 16 21 N -0.70 -13.80 5.39 -463.06 -2.49 -16.29 16 22 C 0.53 13.05 7.61 87.66 0.67 13.72 16 23 O -0.60 -19.44 16.26 -3.02 -0.05 -19.49 16 24 C -0.21 -3.82 6.19 -11.54 -0.07 -3.89 16 25 C -0.14 -1.95 10.24 30.62 0.31 -1.64 16 26 C -0.16 -2.76 10.05 30.62 0.31 -2.46 16 27 C -0.06 -1.73 9.69 22.25 0.22 -1.51 16 28 C -0.20 -7.26 9.99 22.39 0.22 -7.04 16 29 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 30 H 0.11 4.98 5.64 -2.91 -0.02 4.97 16 31 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.09 1.27 8.00 -2.38 -0.02 1.25 16 33 H 0.05 0.70 7.30 -2.39 -0.02 0.68 16 34 H 0.35 7.12 7.93 -89.69 -0.71 6.41 16 35 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 0.50 7.35 -2.39 -0.02 0.48 16 37 H 0.40 2.13 9.12 -74.06 -0.68 1.46 16 38 H 0.05 1.23 7.39 -2.38 -0.02 1.21 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.42 6.87 8.14 -92.71 -0.75 6.11 16 41 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.13 1.23 8.14 -2.39 -0.02 1.22 16 44 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.09 1.88 7.67 -2.39 -0.02 1.86 16 46 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 47 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -76.28 395.24 -1.41 -77.69 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: -1.12 Total: 30.01 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 4.79 Total: -26.69 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -5.01 Total: -85.68 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -2.04 Total: -42.91 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.96 Total: 47.58 kcal Total: -76.28 -1.41 -77.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001441659249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.205 kcal (2) G-P(sol) polarization free energy of solvation -76.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds