Wall clock time and date at job start Tue Mar 31 2020 23:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86798 * 120.00255 * 2 1 4 4 H 1.48499 * 109.46796 * 269.99986 * 3 2 1 5 5 H 1.48505 * 109.47144 * 29.99874 * 3 2 1 6 6 H 1.48494 * 109.47235 * 149.99890 * 3 2 1 7 7 C 1.39897 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00320 * 175.55928 * 7 2 1 9 9 C 1.41156 * 119.99940 * 355.55926 * 7 2 1 10 10 C 1.40873 * 120.16395 * 214.78660 * 9 7 2 11 11 C 1.36373 * 119.82575 * 179.97438 * 10 9 7 12 12 C 1.39480 * 120.17112 * 0.02562 * 11 10 9 13 13 N 1.39241 * 119.83053 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00105 * 35.29543 * 13 12 11 15 15 O 1.21579 * 119.99858 * 355.71076 * 14 13 12 16 16 N 1.34780 * 119.99941 * 175.70533 * 14 13 12 17 17 C 1.46499 * 119.99887 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.78533 * 325.48314 * 17 16 14 19 19 C 1.50555 * 109.57700 * 86.04828 * 17 16 14 20 20 C 1.54066 * 112.41624 * 213.92237 * 19 17 16 21 21 C 1.54065 * 112.81424 * 318.28301 * 20 19 17 22 22 H 1.09003 * 108.87997 * 79.06219 * 21 20 19 23 23 O 1.42903 * 108.87614 * 197.50692 * 21 20 19 24 24 C 1.50478 * 112.49905 * 318.27936 * 21 20 19 25 25 H 1.08992 * 109.63275 * 213.86653 * 24 21 20 26 26 O 1.42902 * 109.78721 * 334.35452 * 24 21 20 27 27 C 1.54242 * 108.51659 * 94.15667 * 24 21 20 28 28 C 1.45544 * 112.40750 * 280.00622 * 27 24 21 29 29 C 1.39475 * 120.33584 * 0.24929 * 12 11 10 30 30 C 1.36378 * 120.16726 * 359.49102 * 29 12 11 31 31 H 0.96998 * 120.00174 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.08280 * 359.97438 * 10 9 7 33 33 H 1.08006 * 119.91458 * 179.97438 * 11 10 9 34 34 H 0.97006 * 120.00055 * 215.28993 * 13 12 11 35 35 H 0.96997 * 120.00105 * 0.02562 * 16 14 13 36 36 H 1.09004 * 108.91999 * 93.16658 * 19 17 16 37 37 H 1.09002 * 108.83763 * 334.62130 * 19 17 16 38 38 H 1.08999 * 108.81318 * 197.41987 * 20 19 17 39 39 H 1.09001 * 108.81484 * 79.14046 * 20 19 17 40 40 H 0.96699 * 113.99826 * 302.97833 * 23 21 20 41 41 H 0.96696 * 113.99869 * 179.12018 * 26 24 21 42 42 H 1.09004 * 108.89229 * 159.25889 * 27 24 21 43 43 H 1.09000 * 108.81965 * 40.70933 * 27 24 21 44 44 H 1.09002 * 108.89846 * 182.68714 * 28 27 24 45 45 H 1.08999 * 108.90171 * 301.28275 * 28 27 24 46 46 H 1.07996 * 119.91966 * 179.74757 * 29 12 11 47 47 H 1.07994 * 120.08836 * 180.22891 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5403 1.4401 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2131 -0.0719 9 6 1.3056 -2.4321 0.0957 10 6 1.8648 -3.5179 0.7978 11 6 1.1797 -4.6938 0.8859 12 6 -0.0712 -4.8231 0.2827 13 7 -0.7643 -6.0271 0.3766 14 6 -0.6823 -6.7660 1.5008 15 8 0.0573 -6.4213 2.4022 16 7 -1.4202 -7.8869 1.6259 17 6 -1.3306 -8.6903 2.8477 18 1 -0.3127 -8.6589 3.2361 19 6 -2.2847 -8.1486 3.8787 20 6 -1.7440 -8.2952 5.3139 21 6 -1.0635 -9.6553 5.5599 22 1 -0.0590 -9.6287 5.1374 23 8 -0.9642 -9.8745 6.9685 24 6 -1.8216 -10.7987 4.9417 25 1 -1.7205 -11.6858 5.5668 26 8 -3.2028 -10.4531 4.8187 27 6 -1.2314 -11.0793 3.5446 28 6 -1.7222 -10.1497 2.5380 29 6 -0.6289 -3.7545 -0.4189 30 6 0.0418 -2.5706 -0.5112 31 1 -0.4850 0.8400 -0.0004 32 1 2.8335 -3.4193 1.2649 33 1 1.6073 -5.5273 1.4234 34 1 -1.3062 -6.3342 -0.3671 35 1 -2.0100 -8.1620 0.9067 36 1 -3.2304 -8.6851 3.8016 37 1 -2.4612 -7.0925 3.6745 38 1 -2.5718 -8.1844 6.0144 39 1 -1.0205 -7.5014 5.4998 40 1 -0.4875 -9.1791 7.4421 41 1 -3.7463 -11.1430 4.4142 42 1 -1.4960 -12.0940 3.2469 43 1 -0.1456 -10.9997 3.5991 44 1 -1.3084 -10.4280 1.5687 45 1 -2.8088 -10.2213 2.4912 46 1 -1.5961 -3.8633 -0.8868 47 1 -0.3928 -1.7428 -1.0516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464957095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:07 Heat of formation + Delta-G solvation = -106.663045 kcal Electronic energy + Delta-G solvation = -28906.758340 eV Core-core repulsion = 24861.105260 eV Total energy + Delta-G solvation = -4045.653080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.56453 -39.50775 -37.48991 -36.53946 -35.80408 -34.29599 -33.27777 -32.66975 -32.12183 -29.74910 -29.44495 -28.49814 -25.28161 -24.42168 -24.10746 -21.67881 -20.92809 -20.86462 -20.00728 -19.90327 -17.93552 -17.83800 -17.23429 -17.11800 -16.58420 -15.84590 -15.58258 -15.23410 -15.01894 -14.74770 -14.28360 -14.07331 -13.85757 -13.80533 -13.38646 -13.15002 -12.76032 -12.67099 -12.52256 -12.30998 -12.07035 -11.68788 -11.48504 -11.44245 -11.30864 -11.19912 -11.11113 -10.94936 -10.85333 -10.68937 -10.62221 -10.08307 -10.00429 -9.87539 -9.49387 -9.41562 -9.19319 -8.86645 -8.80708 -7.49131 -6.78395 -6.56727 -4.28894 2.70970 3.04396 3.11866 3.12309 3.16604 3.21839 3.74840 3.77531 3.96826 4.01845 4.28618 4.54536 4.61643 4.75647 4.78075 4.80590 4.93825 5.05397 5.07949 5.28072 5.37000 5.54047 5.62878 5.67379 5.69124 5.73870 5.84643 5.93813 6.16743 6.19481 6.24046 6.41470 6.50484 6.72439 6.81908 6.89909 7.09891 7.20933 7.32133 7.33958 7.40749 7.46703 7.70169 7.91721 8.02636 8.14726 8.36049 8.53087 8.68958 8.98125 8.98480 9.15495 10.34562 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.002232 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.925269 B =12541.781193 C =13042.856939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.462 4.462 8 H 0.075 0.925 9 C 0.097 3.903 10 C -0.204 4.204 11 C -0.087 4.087 12 C 0.025 3.975 13 N -0.669 5.669 14 C 0.695 3.305 15 O -0.577 6.577 16 N -0.749 5.749 17 C 0.169 3.831 18 H 0.084 0.916 19 C -0.125 4.125 20 C -0.129 4.129 21 C 0.108 3.892 22 H 0.065 0.935 23 O -0.572 6.572 24 C 0.114 3.886 25 H 0.069 0.931 26 O -0.549 6.549 27 C -0.146 4.146 28 C -0.123 4.123 29 C -0.124 4.124 30 C -0.140 4.140 31 H 0.277 0.723 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.391 0.609 35 H 0.391 0.609 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.381 0.619 41 H 0.372 0.628 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.813 -20.633 4.692 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.145 4.145 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.095 3.905 10 C -0.224 4.224 11 C -0.107 4.107 12 C -0.067 4.067 13 N -0.315 5.315 14 C 0.396 3.604 15 O -0.454 6.454 16 N -0.405 5.405 17 C 0.063 3.937 18 H 0.102 0.898 19 C -0.164 4.164 20 C -0.168 4.168 21 C 0.050 3.950 22 H 0.082 0.918 23 O -0.378 6.378 24 C 0.055 3.945 25 H 0.086 0.914 26 O -0.354 6.354 27 C -0.185 4.185 28 C -0.161 4.161 29 C -0.145 4.145 30 C -0.161 4.161 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.224 0.776 35 H 0.224 0.776 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.228 0.772 41 H 0.219 0.781 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.443 -20.124 5.669 21.878 hybrid contribution -0.150 0.558 -0.736 0.935 sum -6.594 -19.567 4.934 21.229 Atomic orbital electron populations 1.69764 1.07246 1.28569 1.38583 1.25860 0.94930 1.01085 0.92661 0.86213 0.80242 0.80620 0.78974 1.19588 1.20359 1.18777 1.19471 0.94660 0.90233 1.44953 0.90713 1.17713 0.92338 0.92014 0.88461 1.20806 1.01157 0.94988 1.05461 1.20415 0.92781 0.97915 0.99589 1.17073 0.93688 0.85048 1.10931 1.42137 1.51685 1.22190 1.15446 1.16027 0.81201 0.80169 0.83032 1.90896 1.42348 1.71258 1.40907 1.45235 1.48104 1.26660 1.20472 1.20468 1.00542 0.88438 0.84241 0.89788 1.21793 0.99945 1.01783 0.92846 1.22261 1.00852 0.95767 0.97911 1.21707 0.97676 0.94276 0.81390 0.91750 1.86511 1.80364 1.51168 1.19757 1.21442 0.81965 0.96775 0.94311 0.91354 1.86671 1.18584 1.45266 1.84852 1.21074 1.02209 0.99884 0.95282 1.20664 1.02323 0.93973 0.99134 1.20293 0.98357 0.93090 1.02730 1.21175 0.97311 0.95455 1.02111 0.91245 0.88697 0.87389 0.77624 0.77649 0.89771 0.91899 0.91050 0.92050 0.77164 0.78128 0.90923 0.90691 0.91381 0.90880 0.89210 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.51 10.60 55.55 0.59 -20.92 16 2 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 3 Si 0.91 19.30 29.56 -169.99 -5.03 14.28 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.46 -12.52 9.02 -37.85 -0.34 -12.86 16 8 H 0.07 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.10 2.65 5.55 -106.80 -0.59 2.05 16 10 C -0.20 -5.26 9.74 -39.26 -0.38 -5.64 16 11 C -0.09 -2.12 8.61 -39.79 -0.34 -2.46 16 12 C 0.03 0.57 6.31 -83.57 -0.53 0.04 16 13 N -0.67 -11.86 5.31 -14.10 -0.07 -11.94 16 14 C 0.69 12.32 8.24 -86.91 -0.72 11.60 16 15 O -0.58 -12.71 13.42 5.30 0.07 -12.64 16 16 N -0.75 -9.30 4.97 -59.24 -0.29 -9.60 16 17 C 0.17 1.89 2.13 -68.50 -0.15 1.75 16 18 H 0.08 1.14 6.40 -51.93 -0.33 0.80 16 19 C -0.13 -1.49 5.01 -27.40 -0.14 -1.62 16 20 C -0.13 -1.49 4.95 -25.62 -0.13 -1.62 16 21 C 0.11 1.07 2.90 -27.44 -0.08 0.99 16 22 H 0.06 0.63 6.62 -51.93 -0.34 0.29 16 23 O -0.57 -5.82 13.17 -35.23 -0.46 -6.29 16 24 C 0.11 0.92 3.50 -27.34 -0.10 0.83 16 25 H 0.07 0.55 7.98 -51.93 -0.41 0.14 16 26 O -0.55 -4.37 8.93 -35.23 -0.31 -4.69 16 27 C -0.15 -0.96 5.13 -29.60 -0.15 -1.12 16 28 C -0.12 -0.91 4.69 -29.60 -0.14 -1.05 16 29 C -0.12 -2.87 9.90 -39.79 -0.39 -3.26 16 30 C -0.14 -3.66 8.61 -39.25 -0.34 -4.00 16 31 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 32 H 0.09 2.33 8.06 -52.49 -0.42 1.90 16 33 H 0.11 2.62 6.22 -52.48 -0.33 2.30 16 34 H 0.39 5.38 8.83 -40.82 -0.36 5.02 16 35 H 0.39 3.61 8.63 -40.82 -0.35 3.26 16 36 H 0.08 0.91 5.33 -51.93 -0.28 0.63 16 37 H 0.06 0.93 7.82 -51.93 -0.41 0.53 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.38 2.59 9.04 45.56 0.41 3.00 16 41 H 0.37 1.46 9.04 45.56 0.41 1.87 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.53 7.46 -51.93 -0.39 0.14 16 44 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 45 H 0.07 0.47 6.72 -51.93 -0.35 0.12 16 46 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.13 3.52 6.13 -52.49 -0.32 3.20 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -33.66 368.04 -9.70 -43.36 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -5.13 Total: 17.57 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -4.60 Total: -14.68 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.22 Total: -42.46 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.71 Total: -23.61 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.66 -9.70 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464957095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.307 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds