Wall clock time and date at job start Tue Mar 31 2020 23:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86798 * 120.00255 * 2 1 4 4 H 1.48499 * 109.46796 * 269.99986 * 3 2 1 5 5 H 1.48505 * 109.47144 * 29.99874 * 3 2 1 6 6 H 1.48494 * 109.47235 * 149.99890 * 3 2 1 7 7 C 1.39897 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00320 * 175.55928 * 7 2 1 9 9 C 1.41156 * 119.99940 * 355.55926 * 7 2 1 10 10 C 1.40873 * 120.16395 * 214.78660 * 9 7 2 11 11 C 1.36373 * 119.82575 * 179.97438 * 10 9 7 12 12 C 1.39480 * 120.17112 * 0.02562 * 11 10 9 13 13 N 1.39241 * 119.83053 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00105 * 35.29543 * 13 12 11 15 15 O 1.21579 * 119.99858 * 355.71076 * 14 13 12 16 16 N 1.34780 * 119.99941 * 175.70533 * 14 13 12 17 17 C 1.46499 * 119.99887 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.78533 * 325.48314 * 17 16 14 19 19 C 1.50555 * 109.57700 * 86.04828 * 17 16 14 20 20 C 1.54066 * 112.41624 * 213.92237 * 19 17 16 21 21 C 1.54065 * 112.81424 * 318.28301 * 20 19 17 22 22 H 1.09003 * 108.87997 * 79.06219 * 21 20 19 23 23 O 1.42903 * 108.87614 * 197.50692 * 21 20 19 24 24 C 1.50478 * 112.49905 * 318.27936 * 21 20 19 25 25 H 1.08992 * 109.63275 * 213.86653 * 24 21 20 26 26 O 1.42902 * 109.78721 * 334.35452 * 24 21 20 27 27 C 1.54242 * 108.51659 * 94.15667 * 24 21 20 28 28 C 1.45544 * 112.40750 * 280.00622 * 27 24 21 29 29 C 1.39475 * 120.33584 * 0.24929 * 12 11 10 30 30 C 1.36378 * 120.16726 * 359.49102 * 29 12 11 31 31 H 0.96998 * 120.00174 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.08280 * 359.97438 * 10 9 7 33 33 H 1.08006 * 119.91458 * 179.97438 * 11 10 9 34 34 H 0.97006 * 120.00055 * 215.28993 * 13 12 11 35 35 H 0.96997 * 120.00105 * 0.02562 * 16 14 13 36 36 H 1.09004 * 108.91999 * 93.16658 * 19 17 16 37 37 H 1.09002 * 108.83763 * 334.62130 * 19 17 16 38 38 H 1.08999 * 108.81318 * 197.41987 * 20 19 17 39 39 H 1.09001 * 108.81484 * 79.14046 * 20 19 17 40 40 H 0.96699 * 113.99826 * 302.97833 * 23 21 20 41 41 H 0.96696 * 113.99869 * 179.12018 * 26 24 21 42 42 H 1.09004 * 108.89229 * 159.25889 * 27 24 21 43 43 H 1.09000 * 108.81965 * 40.70933 * 27 24 21 44 44 H 1.09002 * 108.89846 * 182.68714 * 28 27 24 45 45 H 1.08999 * 108.90171 * 301.28275 * 28 27 24 46 46 H 1.07996 * 119.91966 * 179.74757 * 29 12 11 47 47 H 1.07994 * 120.08836 * 180.22891 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5403 1.4401 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2131 -0.0719 9 6 1.3056 -2.4321 0.0957 10 6 1.8648 -3.5179 0.7978 11 6 1.1797 -4.6938 0.8859 12 6 -0.0712 -4.8231 0.2827 13 7 -0.7643 -6.0271 0.3766 14 6 -0.6823 -6.7660 1.5008 15 8 0.0573 -6.4213 2.4022 16 7 -1.4202 -7.8869 1.6259 17 6 -1.3306 -8.6903 2.8477 18 1 -0.3127 -8.6589 3.2361 19 6 -2.2847 -8.1486 3.8787 20 6 -1.7440 -8.2952 5.3139 21 6 -1.0635 -9.6553 5.5599 22 1 -0.0590 -9.6287 5.1374 23 8 -0.9642 -9.8745 6.9685 24 6 -1.8216 -10.7987 4.9417 25 1 -1.7205 -11.6858 5.5668 26 8 -3.2028 -10.4531 4.8187 27 6 -1.2314 -11.0793 3.5446 28 6 -1.7222 -10.1497 2.5380 29 6 -0.6289 -3.7545 -0.4189 30 6 0.0418 -2.5706 -0.5112 31 1 -0.4850 0.8400 -0.0004 32 1 2.8335 -3.4193 1.2649 33 1 1.6073 -5.5273 1.4234 34 1 -1.3062 -6.3342 -0.3671 35 1 -2.0100 -8.1620 0.9067 36 1 -3.2304 -8.6851 3.8016 37 1 -2.4612 -7.0925 3.6745 38 1 -2.5718 -8.1844 6.0144 39 1 -1.0205 -7.5014 5.4998 40 1 -0.4875 -9.1791 7.4421 41 1 -3.7463 -11.1430 4.4142 42 1 -1.4960 -12.0940 3.2469 43 1 -0.1456 -10.9997 3.5991 44 1 -1.3084 -10.4280 1.5687 45 1 -2.8088 -10.2213 2.4912 46 1 -1.5961 -3.8633 -0.8868 47 1 -0.3928 -1.7428 -1.0516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464957095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:06 Heat of formation + Delta-G solvation = -133.338462 kcal Electronic energy + Delta-G solvation = -28907.915072 eV Core-core repulsion = 24861.105260 eV Total energy + Delta-G solvation = -4046.809813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.67234 -40.66747 -39.19505 -37.39963 -36.75783 -35.99940 -34.80784 -33.87099 -32.99874 -31.47186 -30.91981 -29.97596 -26.88028 -25.49685 -25.01287 -23.40314 -22.67391 -21.78663 -21.47141 -20.78691 -19.40945 -19.08137 -18.70474 -18.05572 -17.74231 -17.05696 -16.77407 -16.32538 -16.25136 -16.11219 -15.66715 -15.39470 -15.11151 -14.83815 -14.64886 -14.47972 -14.08870 -13.99832 -13.79574 -13.56022 -13.27369 -13.20983 -13.06062 -12.85895 -12.77791 -12.47028 -12.34948 -12.27979 -11.87170 -11.80137 -11.57120 -11.38972 -11.35887 -11.21716 -10.98606 -10.87238 -10.63050 -10.56977 -10.01530 -9.44600 -8.66994 -8.48486 -6.30802 0.86578 1.16082 1.39537 1.47440 1.54378 1.78338 2.23370 2.26874 2.83073 3.15694 3.36231 3.39011 3.60896 3.70282 3.84438 3.97209 4.01753 4.23121 4.30056 4.36535 4.40569 4.42563 4.54584 4.62347 4.77875 4.88313 4.95013 5.01689 5.05053 5.14654 5.16323 5.17640 5.20944 5.26026 5.30633 5.35405 5.46404 5.49876 5.65862 5.71795 5.85927 6.05675 6.14334 6.29872 6.41963 6.70215 6.73633 6.98672 7.00406 7.03136 7.21123 7.70425 8.44220 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.002232 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.925269 B =12541.781193 C =13042.856939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.499 4.499 8 H 0.071 0.929 9 C 0.065 3.935 10 C -0.219 4.219 11 C -0.098 4.098 12 C 0.044 3.956 13 N -0.660 5.660 14 C 0.692 3.308 15 O -0.623 6.623 16 N -0.724 5.724 17 C 0.164 3.836 18 H 0.059 0.941 19 C -0.117 4.117 20 C -0.126 4.126 21 C 0.107 3.893 22 H 0.062 0.938 23 O -0.583 6.583 24 C 0.117 3.883 25 H 0.072 0.928 26 O -0.563 6.563 27 C -0.142 4.142 28 C -0.112 4.112 29 C -0.121 4.121 30 C -0.158 4.158 31 H 0.284 0.716 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.414 0.586 35 H 0.412 0.588 36 H 0.102 0.898 37 H 0.027 0.973 38 H 0.064 0.936 39 H 0.037 0.963 40 H 0.392 0.608 41 H 0.392 0.608 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.124 0.876 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.305 -22.727 3.969 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.530 4.530 8 H 0.090 0.910 9 C 0.062 3.938 10 C -0.239 4.239 11 C -0.118 4.118 12 C -0.051 4.051 13 N -0.308 5.308 14 C 0.392 3.608 15 O -0.503 6.503 16 N -0.380 5.380 17 C 0.059 3.941 18 H 0.077 0.923 19 C -0.156 4.156 20 C -0.164 4.164 21 C 0.049 3.951 22 H 0.080 0.920 23 O -0.391 6.391 24 C 0.058 3.942 25 H 0.090 0.910 26 O -0.372 6.372 27 C -0.180 4.180 28 C -0.149 4.149 29 C -0.142 4.142 30 C -0.178 4.178 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.251 0.749 35 H 0.248 0.752 36 H 0.120 0.880 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.241 0.759 41 H 0.242 0.758 42 H 0.122 0.878 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.142 0.858 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.997 -22.301 4.913 24.195 hybrid contribution 0.223 1.047 -0.435 1.156 sum -7.774 -21.253 4.478 23.069 Atomic orbital electron populations 1.69829 1.08549 1.29859 1.38899 1.26729 0.95822 1.04274 0.91654 0.85112 0.78641 0.75866 0.79481 1.18332 1.19459 1.18759 1.19699 0.94772 0.91357 1.47144 0.91038 1.18023 0.93443 0.92678 0.89613 1.20922 1.01541 0.95551 1.05935 1.20514 0.93786 0.97426 1.00092 1.17087 0.92920 0.86499 1.08567 1.41905 1.51531 1.20783 1.16630 1.16230 0.81196 0.81054 0.82277 1.90877 1.44432 1.72615 1.42419 1.45026 1.46833 1.24687 1.21457 1.20647 0.99150 0.90857 0.83409 0.92288 1.21740 1.00971 0.99713 0.93143 1.22201 1.00050 0.96473 0.97695 1.21782 0.97809 0.94076 0.81481 0.92004 1.86486 1.80663 1.51942 1.20051 1.21396 0.82052 0.95606 0.95136 0.90991 1.86611 1.18651 1.46639 1.85281 1.21060 1.01712 1.01238 0.93972 1.20610 1.03651 0.90658 1.00016 1.20530 0.99325 0.92021 1.02297 1.21166 0.97478 0.96387 1.02773 0.90557 0.88779 0.87535 0.74896 0.75175 0.88017 0.95425 0.91766 0.94366 0.75896 0.75825 0.87766 0.91314 0.89982 0.88903 0.85782 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.41 10.60 21.82 0.23 -45.18 16 2 C 0.03 1.40 5.42 85.24 0.46 1.86 16 3 Si 0.99 39.98 29.56 68.60 2.03 42.01 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.50 -28.03 9.02 23.39 0.21 -27.82 16 8 H 0.07 3.89 7.85 -2.91 -0.02 3.86 16 9 C 0.06 3.66 5.55 -21.27 -0.12 3.54 16 10 C -0.22 -11.77 9.74 22.48 0.22 -11.55 16 11 C -0.10 -4.87 8.61 22.13 0.19 -4.68 16 12 C 0.04 1.94 6.31 38.56 0.24 2.18 16 13 N -0.66 -22.31 5.31 -316.79 -1.68 -24.00 16 14 C 0.69 23.88 8.24 179.05 1.48 25.35 16 15 O -0.62 -27.84 13.42 -3.97 -0.05 -27.90 16 16 N -0.72 -16.50 4.97 -459.60 -2.28 -18.78 16 17 C 0.16 3.44 2.13 44.62 0.10 3.54 16 18 H 0.06 1.58 6.40 -2.39 -0.02 1.57 16 19 C -0.12 -2.71 5.01 30.16 0.15 -2.55 16 20 C -0.13 -2.95 4.95 31.31 0.16 -2.79 16 21 C 0.11 2.06 2.90 30.14 0.09 2.15 16 22 H 0.06 1.21 6.62 -2.39 -0.02 1.19 16 23 O -0.58 -11.60 13.17 -148.98 -1.96 -13.56 16 24 C 0.12 1.61 3.50 30.20 0.11 1.72 16 25 H 0.07 0.97 7.98 -2.39 -0.02 0.95 16 26 O -0.56 -7.33 8.93 -148.98 -1.33 -8.66 16 27 C -0.14 -1.38 5.13 28.74 0.15 -1.23 16 28 C -0.11 -1.25 4.69 28.74 0.13 -1.11 16 29 C -0.12 -5.53 9.90 22.13 0.22 -5.31 16 30 C -0.16 -8.40 8.61 22.48 0.19 -8.21 16 31 H 0.28 13.89 8.30 -92.71 -0.77 13.12 16 32 H 0.09 4.87 8.06 -2.91 -0.02 4.85 16 33 H 0.11 5.31 6.22 -2.91 -0.02 5.29 16 34 H 0.41 10.15 8.83 -92.70 -0.82 9.33 16 35 H 0.41 6.14 8.63 -92.71 -0.80 5.34 16 36 H 0.10 1.98 5.33 -2.39 -0.01 1.97 16 37 H 0.03 0.82 7.82 -2.39 -0.02 0.80 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.39 5.40 9.04 -74.06 -0.67 4.73 16 41 H 0.39 1.53 9.04 -74.06 -0.67 0.86 16 42 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.07 0.80 7.46 -2.39 -0.02 0.78 16 44 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 45 H 0.09 0.74 6.72 -2.39 -0.02 0.72 16 46 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 47 H 0.12 6.56 6.13 -2.91 -0.02 6.55 16 Total: -1.00 -76.44 368.04 -2.98 -79.43 By element: Atomic # 1 Polarization: 43.48 SS G_CDS: -1.91 Total: 41.57 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 3.97 Total: -24.93 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -3.73 Total: -87.96 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -3.35 Total: -50.12 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -76.44 -2.98 -79.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464957095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.911 kcal (2) G-P(sol) polarization free energy of solvation -76.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds