Wall clock time and date at job start Tue Mar 31 2020 23:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86798 * 120.00295 * 2 1 4 4 H 1.48495 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47156 * 299.99676 * 3 2 1 6 6 H 1.48501 * 109.47195 * 59.99909 * 3 2 1 7 7 C 1.39893 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00199 * 196.85005 * 7 2 1 9 9 C 1.41158 * 119.99961 * 16.84835 * 7 2 1 10 10 C 1.40870 * 120.16625 * 205.36062 * 9 7 2 11 11 C 1.36371 * 119.83158 * 179.97438 * 10 9 7 12 12 C 1.39481 * 120.16596 * 0.02562 * 11 10 9 13 13 N 1.39247 * 119.82967 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99704 * 145.58730 * 13 12 11 15 15 O 1.21581 * 120.00391 * 354.85771 * 14 13 12 16 16 N 1.34780 * 119.99614 * 174.85576 * 14 13 12 17 17 C 1.46499 * 119.99577 * 180.02562 * 16 14 13 18 18 H 1.08990 * 108.79976 * 36.44171 * 17 16 14 19 19 C 1.54243 * 108.89396 * 277.87846 * 17 16 14 20 20 C 1.50471 * 108.52822 * 159.27331 * 19 17 16 21 21 C 1.53998 * 112.55152 * 94.07102 * 20 19 17 22 22 H 1.09005 * 108.71974 * 79.25844 * 21 20 19 23 23 O 1.42901 * 108.87479 * 197.51728 * 21 20 19 24 24 C 1.54073 * 112.85242 * 318.44126 * 21 20 19 25 25 H 1.09001 * 108.87599 * 78.86181 * 24 21 20 26 26 O 1.42901 * 108.87813 * 197.40608 * 24 21 20 27 27 C 1.50473 * 112.42042 * 318.13907 * 24 21 20 28 28 C 1.45541 * 108.89385 * 155.00237 * 17 16 14 29 29 C 1.39480 * 120.33596 * 0.23455 * 12 11 10 30 30 C 1.36376 * 120.16703 * 359.48464 * 29 12 11 31 31 H 0.97001 * 119.99354 * 0.02562 * 1 2 3 32 32 H 1.08008 * 120.08192 * 359.97438 * 10 9 7 33 33 H 1.07994 * 119.91725 * 180.02562 * 11 10 9 34 34 H 0.97001 * 120.00213 * 325.58838 * 13 12 11 35 35 H 0.96993 * 120.00059 * 359.97438 * 16 14 13 36 36 H 1.09002 * 109.63086 * 278.98447 * 19 17 16 37 37 H 1.08999 * 109.62990 * 39.56516 * 19 17 16 38 38 H 1.09003 * 108.87754 * 214.92646 * 20 19 17 39 39 H 1.09003 * 108.87670 * 333.46773 * 20 19 17 40 40 H 0.96702 * 114.00310 * 303.37069 * 23 21 20 41 41 H 0.96697 * 113.99917 * 181.43782 * 26 24 21 42 42 H 1.09002 * 109.62700 * 213.91240 * 27 24 21 43 43 H 1.09003 * 109.62679 * 334.29646 * 27 24 21 44 44 H 1.08995 * 108.89968 * 61.93187 * 28 17 16 45 45 H 1.09004 * 108.89397 * 303.44150 * 28 17 16 46 46 H 1.08001 * 119.91660 * 179.72247 * 29 12 11 47 47 H 1.07997 * 120.08661 * 180.27747 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7028 1.3462 0.0006 5 1 1.8843 2.3964 -1.2125 6 1 1.8842 2.3964 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0535 -1.2316 0.2717 9 6 1.3478 -2.4079 -0.3532 10 6 1.8183 -3.6453 0.1284 11 6 1.1747 -4.7968 -0.2173 12 6 0.0536 -4.7516 -1.0459 13 7 -0.5979 -5.9317 -1.3949 14 6 -1.9360 -5.9407 -1.5553 15 8 -2.5850 -4.9435 -1.3049 16 7 -2.5547 -7.0550 -1.9934 17 6 -4.0092 -7.0646 -2.1683 18 1 -4.3253 -6.0880 -2.5347 19 6 -4.6750 -7.3247 -0.8015 20 6 -6.0983 -6.8405 -0.8630 21 6 -7.0873 -7.9598 -1.2379 22 1 -7.2849 -8.5633 -0.3519 23 8 -8.3134 -7.3673 -1.6712 24 6 -6.5565 -8.8775 -2.3559 25 1 -5.8473 -9.5842 -1.9251 26 8 -7.6516 -9.6053 -2.9155 27 6 -5.8717 -8.1083 -3.4530 28 6 -4.3585 -8.0744 -3.1564 29 6 -0.4150 -3.5307 -1.5311 30 6 0.2147 -2.3703 -1.1895 31 1 -0.4849 0.8401 -0.0004 32 1 2.6865 -3.6819 0.7698 33 1 1.5339 -5.7462 0.1515 34 1 -0.0886 -6.7474 -1.5225 35 1 -2.0370 -7.8504 -2.1935 36 1 -4.6607 -8.3928 -0.5846 37 1 -4.1373 -6.7830 -0.0233 38 1 -6.3754 -6.4356 0.1104 39 1 -6.1691 -6.0474 -1.6074 40 1 -8.7142 -6.7731 -1.0220 41 1 -7.3969 -10.2239 -3.6137 42 1 -6.0465 -8.6008 -4.4096 43 1 -6.2639 -7.0919 -3.4874 44 1 -4.0493 -9.0520 -2.7866 45 1 -3.8221 -7.8633 -4.0816 46 1 -1.2809 -3.5040 -2.1759 47 1 -0.1518 -1.4253 -1.5623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464957100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:12 Heat of formation + Delta-G solvation = -109.892352 kcal Electronic energy + Delta-G solvation = -28647.064725 eV Core-core repulsion = 24601.271611 eV Total energy + Delta-G solvation = -4045.793113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 7.43 seconds Orbital eigenvalues (eV) -40.54149 -39.41197 -37.58224 -36.41551 -36.31414 -34.35558 -33.41247 -32.71804 -31.91428 -29.67231 -29.40470 -28.50532 -25.25414 -24.54986 -24.22550 -21.63919 -21.16973 -20.90741 -19.97445 -19.80737 -18.05639 -17.90497 -17.29754 -17.14156 -16.74924 -15.96743 -15.52319 -15.13499 -14.96807 -14.66761 -14.08497 -13.93530 -13.88312 -13.74908 -13.52152 -13.39379 -13.03559 -12.69416 -12.66661 -12.15101 -12.04757 -11.79642 -11.73599 -11.57844 -11.45993 -11.16076 -11.07663 -10.91291 -10.85223 -10.57584 -10.48492 -10.40623 -9.95179 -9.92768 -9.84311 -9.49921 -9.24071 -8.88543 -8.66961 -7.48793 -6.95117 -6.69319 -4.25273 2.69820 2.99569 3.09507 3.10494 3.15248 3.18015 3.73431 3.79494 3.95754 3.96398 4.23738 4.48981 4.59672 4.68602 4.72768 4.76093 4.79318 4.94345 4.99682 5.13010 5.27384 5.44776 5.53401 5.61269 5.70281 5.73147 5.75631 5.84801 6.02516 6.06956 6.17497 6.17757 6.40531 6.65249 6.85403 6.86107 7.08333 7.14661 7.31689 7.32698 7.39000 7.49154 7.65031 7.89136 8.04274 8.09382 8.30263 8.53085 8.67073 8.92596 8.96676 9.16530 10.23468 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022792 B = 0.002189 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.224219 B =12786.777842 C =13532.181707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.460 4.460 8 H 0.078 0.922 9 C 0.104 3.896 10 C -0.215 4.215 11 C -0.108 4.108 12 C 0.015 3.985 13 N -0.668 5.668 14 C 0.693 3.307 15 O -0.572 6.572 16 N -0.753 5.753 17 C 0.167 3.833 18 H 0.086 0.914 19 C -0.126 4.126 20 C -0.149 4.149 21 C 0.116 3.884 22 H 0.053 0.947 23 O -0.553 6.553 24 C 0.117 3.883 25 H 0.062 0.938 26 O -0.557 6.557 27 C -0.143 4.143 28 C -0.129 4.129 29 C -0.086 4.086 30 C -0.154 4.154 31 H 0.280 0.720 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.389 0.611 35 H 0.389 0.611 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.374 0.626 41 H 0.373 0.627 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.232 -17.551 -5.180 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.101 3.899 10 C -0.235 4.235 11 C -0.128 4.128 12 C -0.078 4.078 13 N -0.314 5.314 14 C 0.393 3.607 15 O -0.448 6.448 16 N -0.409 5.409 17 C 0.062 3.938 18 H 0.104 0.896 19 C -0.165 4.165 20 C -0.187 4.187 21 C 0.056 3.944 22 H 0.071 0.929 23 O -0.358 6.358 24 C 0.058 3.942 25 H 0.080 0.920 26 O -0.362 6.362 27 C -0.181 4.181 28 C -0.167 4.167 29 C -0.106 4.106 30 C -0.174 4.174 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.222 0.778 35 H 0.222 0.778 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.221 0.779 41 H 0.220 0.780 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.119 0.881 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.255 -16.443 -5.048 20.556 hybrid contribution 1.129 -0.030 0.159 1.140 sum -10.127 -16.472 -4.889 19.945 Atomic orbital electron populations 1.69877 1.07509 1.29084 1.35080 1.25932 0.94734 1.01318 0.92455 0.86280 0.80917 0.81091 0.78524 1.18445 1.19744 1.20053 1.19549 0.97734 0.91168 1.40526 0.90427 1.17664 0.91297 0.92082 0.88858 1.20534 1.03798 0.92521 1.06621 1.20016 0.97172 0.97155 0.98484 1.16961 0.98847 0.84434 1.07514 1.42131 1.04850 1.11797 1.72669 1.16044 0.82180 0.83473 0.78969 1.90949 1.64550 1.32990 1.56358 1.45361 1.07587 1.14349 1.73598 1.19669 0.79098 1.00620 0.94446 0.89584 1.21702 0.94991 1.01315 0.98451 1.22023 0.95031 0.98706 1.02976 1.22277 0.84609 0.92492 0.94991 0.92868 1.86632 1.37661 1.65165 1.46331 1.21701 0.87647 0.92070 0.92745 0.92030 1.86632 1.34644 1.58085 1.56833 1.22010 0.93989 1.03432 0.98683 1.20748 0.96617 0.99559 0.99781 1.20424 0.98836 0.91649 0.99689 1.20987 0.98917 0.96668 1.00806 0.90911 0.88694 0.89339 0.77806 0.77751 0.91798 0.90282 0.91024 0.90267 0.77913 0.78019 0.90510 0.89902 0.91507 0.90797 0.88130 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.10 10.95 55.55 0.61 -20.49 16 2 C 0.07 1.88 5.15 -17.34 -0.09 1.79 16 3 Si 0.91 18.89 29.59 -169.99 -5.03 13.86 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 7 C -0.46 -12.31 9.04 -37.85 -0.34 -12.65 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.10 2.80 5.57 -106.80 -0.59 2.21 16 10 C -0.21 -5.24 9.74 -39.26 -0.38 -5.62 16 11 C -0.11 -2.38 9.90 -39.79 -0.39 -2.77 16 12 C 0.02 0.34 6.27 -83.57 -0.52 -0.19 16 13 N -0.67 -11.71 5.31 -14.10 -0.07 -11.79 16 14 C 0.69 12.22 8.02 -86.91 -0.70 11.52 16 15 O -0.57 -12.86 13.75 5.29 0.07 -12.79 16 16 N -0.75 -9.05 5.03 -61.53 -0.31 -9.36 16 17 C 0.17 1.81 1.94 -70.80 -0.14 1.68 16 18 H 0.09 1.18 6.92 -51.93 -0.36 0.82 16 19 C -0.13 -1.32 5.18 -27.34 -0.14 -1.46 16 20 C -0.15 -1.45 4.89 -27.47 -0.13 -1.58 16 21 C 0.12 1.07 3.26 -25.65 -0.08 0.99 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 O -0.55 -5.77 12.77 -54.14 -0.69 -6.46 16 24 C 0.12 0.98 2.76 -27.43 -0.08 0.91 16 25 H 0.06 0.43 6.63 -51.93 -0.34 0.09 16 26 O -0.56 -5.20 12.70 -54.14 -0.69 -5.89 16 27 C -0.14 -1.13 5.30 -27.35 -0.14 -1.27 16 28 C -0.13 -0.99 4.60 -29.60 -0.14 -1.13 16 29 C -0.09 -2.16 8.57 -39.79 -0.34 -2.50 16 30 C -0.15 -4.16 8.63 -39.26 -0.34 -4.50 16 31 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 32 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 33 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.39 5.20 8.83 -40.82 -0.36 4.84 16 35 H 0.39 3.39 8.57 -40.82 -0.35 3.04 16 36 H 0.06 0.55 6.98 -51.93 -0.36 0.19 16 37 H 0.08 1.07 7.90 -51.93 -0.41 0.66 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.87 6.63 -51.93 -0.34 0.52 16 40 H 0.37 2.46 9.04 45.56 0.41 2.87 16 41 H 0.37 1.80 8.88 45.56 0.40 2.20 16 42 H 0.08 0.50 7.82 -51.93 -0.41 0.10 16 43 H 0.08 0.81 6.99 -51.93 -0.36 0.45 16 44 H 0.07 0.40 7.47 -51.93 -0.39 0.02 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.10 2.56 6.48 -52.49 -0.34 2.22 16 47 H 0.12 3.35 6.18 -52.49 -0.32 3.03 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -34.53 372.26 -10.26 -44.79 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -5.20 Total: 17.11 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -4.56 Total: -14.58 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.22 Total: -41.64 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -1.31 Total: -25.14 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.53 -10.26 -44.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464957100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.103 kcal (2) G-P(sol) polarization free energy of solvation -34.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.43 seconds