Wall clock time and date at job start Tue Mar 31 2020 23:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86798 * 120.00295 * 2 1 4 4 H 1.48495 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47156 * 299.99676 * 3 2 1 6 6 H 1.48501 * 109.47195 * 59.99909 * 3 2 1 7 7 C 1.39893 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00199 * 196.85005 * 7 2 1 9 9 C 1.41158 * 119.99961 * 16.84835 * 7 2 1 10 10 C 1.40870 * 120.16625 * 205.36062 * 9 7 2 11 11 C 1.36371 * 119.83158 * 179.97438 * 10 9 7 12 12 C 1.39481 * 120.16596 * 0.02562 * 11 10 9 13 13 N 1.39247 * 119.82967 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99704 * 145.58730 * 13 12 11 15 15 O 1.21581 * 120.00391 * 354.85771 * 14 13 12 16 16 N 1.34780 * 119.99614 * 174.85576 * 14 13 12 17 17 C 1.46499 * 119.99577 * 180.02562 * 16 14 13 18 18 H 1.08990 * 108.79976 * 36.44171 * 17 16 14 19 19 C 1.54243 * 108.89396 * 277.87846 * 17 16 14 20 20 C 1.50471 * 108.52822 * 159.27331 * 19 17 16 21 21 C 1.53998 * 112.55152 * 94.07102 * 20 19 17 22 22 H 1.09005 * 108.71974 * 79.25844 * 21 20 19 23 23 O 1.42901 * 108.87479 * 197.51728 * 21 20 19 24 24 C 1.54073 * 112.85242 * 318.44126 * 21 20 19 25 25 H 1.09001 * 108.87599 * 78.86181 * 24 21 20 26 26 O 1.42901 * 108.87813 * 197.40608 * 24 21 20 27 27 C 1.50473 * 112.42042 * 318.13907 * 24 21 20 28 28 C 1.45541 * 108.89385 * 155.00237 * 17 16 14 29 29 C 1.39480 * 120.33596 * 0.23455 * 12 11 10 30 30 C 1.36376 * 120.16703 * 359.48464 * 29 12 11 31 31 H 0.97001 * 119.99354 * 0.02562 * 1 2 3 32 32 H 1.08008 * 120.08192 * 359.97438 * 10 9 7 33 33 H 1.07994 * 119.91725 * 180.02562 * 11 10 9 34 34 H 0.97001 * 120.00213 * 325.58838 * 13 12 11 35 35 H 0.96993 * 120.00059 * 359.97438 * 16 14 13 36 36 H 1.09002 * 109.63086 * 278.98447 * 19 17 16 37 37 H 1.08999 * 109.62990 * 39.56516 * 19 17 16 38 38 H 1.09003 * 108.87754 * 214.92646 * 20 19 17 39 39 H 1.09003 * 108.87670 * 333.46773 * 20 19 17 40 40 H 0.96702 * 114.00310 * 303.37069 * 23 21 20 41 41 H 0.96697 * 113.99917 * 181.43782 * 26 24 21 42 42 H 1.09002 * 109.62700 * 213.91240 * 27 24 21 43 43 H 1.09003 * 109.62679 * 334.29646 * 27 24 21 44 44 H 1.08995 * 108.89968 * 61.93187 * 28 17 16 45 45 H 1.09004 * 108.89397 * 303.44150 * 28 17 16 46 46 H 1.08001 * 119.91660 * 179.72247 * 29 12 11 47 47 H 1.07997 * 120.08661 * 180.27747 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7028 1.3462 0.0006 5 1 1.8843 2.3964 -1.2125 6 1 1.8842 2.3964 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0535 -1.2316 0.2717 9 6 1.3478 -2.4079 -0.3532 10 6 1.8183 -3.6453 0.1284 11 6 1.1747 -4.7968 -0.2173 12 6 0.0536 -4.7516 -1.0459 13 7 -0.5979 -5.9317 -1.3949 14 6 -1.9360 -5.9407 -1.5553 15 8 -2.5850 -4.9435 -1.3049 16 7 -2.5547 -7.0550 -1.9934 17 6 -4.0092 -7.0646 -2.1683 18 1 -4.3253 -6.0880 -2.5347 19 6 -4.6750 -7.3247 -0.8015 20 6 -6.0983 -6.8405 -0.8630 21 6 -7.0873 -7.9598 -1.2379 22 1 -7.2849 -8.5633 -0.3519 23 8 -8.3134 -7.3673 -1.6712 24 6 -6.5565 -8.8775 -2.3559 25 1 -5.8473 -9.5842 -1.9251 26 8 -7.6516 -9.6053 -2.9155 27 6 -5.8717 -8.1083 -3.4530 28 6 -4.3585 -8.0744 -3.1564 29 6 -0.4150 -3.5307 -1.5311 30 6 0.2147 -2.3703 -1.1895 31 1 -0.4849 0.8401 -0.0004 32 1 2.6865 -3.6819 0.7698 33 1 1.5339 -5.7462 0.1515 34 1 -0.0886 -6.7474 -1.5225 35 1 -2.0370 -7.8504 -2.1935 36 1 -4.6607 -8.3928 -0.5846 37 1 -4.1373 -6.7830 -0.0233 38 1 -6.3754 -6.4356 0.1104 39 1 -6.1691 -6.0474 -1.6074 40 1 -8.7142 -6.7731 -1.0220 41 1 -7.3969 -10.2239 -3.6137 42 1 -6.0465 -8.6008 -4.4096 43 1 -6.2639 -7.0919 -3.4874 44 1 -4.0493 -9.0520 -2.7866 45 1 -3.8221 -7.8633 -4.0816 46 1 -1.2809 -3.5040 -2.1759 47 1 -0.1518 -1.4253 -1.5623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464957100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:11 Heat of formation + Delta-G solvation = -137.352058 kcal Electronic energy + Delta-G solvation = -28648.255467 eV Core-core repulsion = 24601.271611 eV Total energy + Delta-G solvation = -4046.983855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.68407 -40.54057 -39.19900 -37.50767 -37.01368 -36.09416 -34.87044 -34.12260 -32.65977 -31.41109 -30.99140 -29.84611 -26.82939 -25.50854 -25.12330 -23.30674 -22.90870 -21.87181 -21.47746 -20.62529 -19.36554 -19.17078 -18.76655 -18.31736 -17.61573 -17.25131 -16.90858 -16.44128 -16.12131 -15.79655 -15.64158 -15.39204 -14.98206 -14.68232 -14.47213 -14.43003 -14.30483 -14.15188 -13.93072 -13.72658 -13.49086 -13.34442 -12.96276 -12.80311 -12.64655 -12.47544 -12.31452 -12.29038 -11.90308 -11.72122 -11.69170 -11.68801 -11.29755 -11.24741 -11.09490 -10.99456 -10.62786 -10.49721 -10.05245 -9.43402 -8.81186 -8.58412 -6.24491 0.88047 1.15832 1.38300 1.46984 1.54622 1.78214 2.20831 2.25082 2.79678 3.16670 3.30457 3.40940 3.55305 3.73743 3.76820 3.99891 4.05477 4.09491 4.20748 4.29281 4.31564 4.45329 4.47658 4.56835 4.78430 4.80174 4.86255 4.92561 4.99060 5.06668 5.09399 5.12041 5.18255 5.25773 5.28182 5.32237 5.39029 5.46429 5.58668 5.68817 5.81821 6.10975 6.14782 6.25198 6.38701 6.70710 6.81326 6.94989 7.00064 7.04108 7.23021 7.73288 8.36036 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022792 B = 0.002189 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.224219 B =12786.777842 C =13532.181707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.028 3.972 3 Si 0.985 3.015 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.494 4.494 8 H 0.082 0.918 9 C 0.070 3.930 10 C -0.221 4.221 11 C -0.102 4.102 12 C 0.032 3.968 13 N -0.659 5.659 14 C 0.690 3.310 15 O -0.625 6.625 16 N -0.726 5.726 17 C 0.169 3.831 18 H 0.049 0.951 19 C -0.120 4.120 20 C -0.142 4.142 21 C 0.114 3.886 22 H 0.062 0.938 23 O -0.574 6.574 24 C 0.115 3.885 25 H 0.086 0.914 26 O -0.578 6.578 27 C -0.137 4.137 28 C -0.121 4.121 29 C -0.100 4.100 30 C -0.179 4.179 31 H 0.285 0.715 32 H 0.111 0.889 33 H 0.135 0.865 34 H 0.415 0.585 35 H 0.412 0.588 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.387 0.613 41 H 0.392 0.608 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.451 -20.635 -5.307 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.186 4.186 3 Si 0.806 3.194 4 H -0.176 1.176 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.524 4.524 8 H 0.100 0.900 9 C 0.068 3.932 10 C -0.241 4.241 11 C -0.122 4.122 12 C -0.062 4.062 13 N -0.307 5.307 14 C 0.391 3.609 15 O -0.505 6.505 16 N -0.383 5.383 17 C 0.064 3.936 18 H 0.068 0.932 19 C -0.158 4.158 20 C -0.180 4.180 21 C 0.055 3.945 22 H 0.080 0.920 23 O -0.381 6.381 24 C 0.056 3.944 25 H 0.103 0.897 26 O -0.387 6.387 27 C -0.176 4.176 28 C -0.159 4.159 29 C -0.121 4.121 30 C -0.199 4.199 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.153 0.847 34 H 0.252 0.748 35 H 0.249 0.751 36 H 0.112 0.888 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.236 0.764 41 H 0.242 0.758 42 H 0.114 0.886 43 H 0.075 0.925 44 H 0.117 0.883 45 H 0.097 0.903 46 H 0.106 0.894 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.470 -19.634 -5.204 22.852 hybrid contribution 0.760 0.754 0.170 1.085 sum -9.710 -18.880 -5.034 21.819 Atomic orbital electron populations 1.69964 1.09261 1.30304 1.36302 1.26867 0.95436 1.04911 0.91380 0.85118 0.79566 0.76018 0.78723 1.17582 1.19229 1.19226 1.19824 0.98108 0.92208 1.42231 0.90027 1.18006 0.91843 0.93684 0.89714 1.20827 1.04346 0.92430 1.06514 1.20379 0.96205 0.98372 0.97257 1.16997 0.98426 0.85070 1.05751 1.41878 1.05061 1.11290 1.72473 1.16262 0.81977 0.84047 0.78644 1.90934 1.65654 1.35479 1.58445 1.45125 1.08202 1.13450 1.71528 1.19777 0.78017 1.00167 0.95624 0.93224 1.21626 0.94675 1.02580 0.96959 1.21930 0.95110 0.98641 1.02354 1.22354 0.83884 0.92225 0.96004 0.92006 1.86594 1.38211 1.65692 1.47560 1.21784 0.87791 0.92274 0.92528 0.89669 1.86585 1.35502 1.58756 1.57809 1.21957 0.93787 1.02121 0.99708 1.20670 0.96562 0.99762 0.98906 1.20438 0.98628 0.92727 1.00262 1.20874 1.00216 0.96434 1.02380 0.90423 0.87121 0.84745 0.74816 0.75055 0.88840 0.93580 0.91050 0.92318 0.76445 0.75838 0.88634 0.92546 0.88315 0.90261 0.89377 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.58 10.95 21.82 0.24 -46.34 16 2 C 0.03 1.47 5.15 85.23 0.44 1.91 16 3 Si 0.99 39.58 29.59 68.60 2.03 41.61 16 4 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 7 C -0.49 -27.26 9.04 23.39 0.21 -27.05 16 8 H 0.08 4.25 7.90 -2.91 -0.02 4.23 16 9 C 0.07 3.91 5.57 -21.27 -0.12 3.79 16 10 C -0.22 -10.70 9.74 22.48 0.22 -10.49 16 11 C -0.10 -4.28 9.90 22.13 0.22 -4.07 16 12 C 0.03 1.40 6.27 38.56 0.24 1.64 16 13 N -0.66 -21.78 5.31 -316.78 -1.68 -23.47 16 14 C 0.69 23.83 8.02 179.05 1.44 25.26 16 15 O -0.63 -28.98 13.75 -3.97 -0.05 -29.03 16 16 N -0.73 -15.95 5.03 -466.83 -2.35 -18.30 16 17 C 0.17 3.47 1.94 43.13 0.08 3.56 16 18 H 0.05 1.42 6.92 -2.39 -0.02 1.40 16 19 C -0.12 -2.38 5.18 30.20 0.16 -2.22 16 20 C -0.14 -2.76 4.89 30.11 0.15 -2.61 16 21 C 0.11 1.97 3.26 31.29 0.10 2.07 16 22 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 23 O -0.57 -11.70 12.77 -130.90 -1.67 -13.37 16 24 C 0.11 1.62 2.76 30.14 0.08 1.70 16 25 H 0.09 0.80 6.63 -2.39 -0.02 0.79 16 26 O -0.58 -9.32 12.70 -130.90 -1.66 -10.99 16 27 C -0.14 -1.87 5.30 30.20 0.16 -1.71 16 28 C -0.12 -1.50 4.60 28.73 0.13 -1.36 16 29 C -0.10 -5.23 8.57 22.13 0.19 -5.04 16 30 C -0.18 -10.21 8.63 22.48 0.19 -10.02 16 31 H 0.29 14.52 8.30 -92.71 -0.77 13.75 16 32 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 33 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.41 9.53 8.83 -92.71 -0.82 8.72 16 35 H 0.41 5.54 8.57 -92.71 -0.79 4.74 16 36 H 0.09 1.30 6.98 -2.39 -0.02 1.28 16 37 H 0.05 1.24 7.90 -2.39 -0.02 1.22 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.38 6.63 -2.39 -0.02 1.36 16 40 H 0.39 5.09 9.04 -74.06 -0.67 4.42 16 41 H 0.39 2.59 8.88 -74.06 -0.66 1.93 16 42 H 0.10 0.97 7.82 -2.39 -0.02 0.95 16 43 H 0.06 1.09 6.99 -2.39 -0.02 1.07 16 44 H 0.10 0.67 7.47 -2.39 -0.02 0.65 16 45 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.09 4.74 6.48 -2.91 -0.02 4.72 16 47 H 0.09 5.74 6.18 -2.91 -0.02 5.72 16 Total: -1.00 -80.25 372.26 -3.15 -83.40 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: -1.89 Total: 41.14 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 3.90 Total: -24.64 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -3.79 Total: -88.11 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -3.39 Total: -53.39 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -80.25 -3.15 -83.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464957100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.956 kcal (2) G-P(sol) polarization free energy of solvation -80.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds