Wall clock time and date at job start Tue Mar 31 2020 21:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99591 * 2 1 4 4 H 1.48498 * 109.47292 * 269.99857 * 3 2 1 5 5 H 1.48504 * 109.47279 * 29.99955 * 3 2 1 6 6 H 1.48495 * 109.46704 * 149.99941 * 3 2 1 7 7 C 1.37870 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00151 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00248 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.46956 * 110.99711 * 169.99669 * 10 9 7 12 12 C 1.53053 * 109.36136 * 183.18735 * 11 10 9 13 13 N 1.46955 * 109.36631 * 301.60355 * 12 11 10 14 14 C 1.46900 * 111.00071 * 183.18822 * 13 12 11 15 15 C 1.53005 * 109.47015 * 75.77677 * 14 13 12 16 16 O 1.42894 * 109.47452 * 65.05586 * 15 14 13 17 17 C 1.35979 * 117.00012 * 180.02562 * 16 15 14 18 18 C 1.38690 * 119.98901 * 359.72451 * 17 16 15 19 19 C 1.38219 * 120.08800 * 179.74484 * 18 17 16 20 20 C 1.38532 * 120.09395 * 0.50947 * 19 18 17 21 21 C 1.39256 * 119.92016 * 359.76391 * 20 19 18 22 22 C 1.38530 * 119.88197 * 359.97438 * 21 20 19 23 23 O 1.36507 * 108.64671 * 179.97438 * 21 20 19 24 24 C 1.43983 * 105.49881 * 342.71046 * 23 21 20 25 25 O 1.36597 * 131.45912 * 179.73980 * 20 19 18 26 26 C 1.46956 * 110.88495 * 59.31621 * 13 12 11 27 27 C 1.46955 * 110.99742 * 293.79823 * 10 9 7 28 28 H 0.97003 * 120.00037 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47449 * 59.99379 * 9 7 2 30 30 H 1.09007 * 109.46630 * 299.99919 * 9 7 2 31 31 H 1.08993 * 109.48768 * 63.22680 * 11 10 9 32 32 H 1.08996 * 109.50680 * 303.16396 * 11 10 9 33 33 H 1.08996 * 109.49026 * 181.62884 * 12 11 10 34 34 H 1.09004 * 109.48951 * 61.57014 * 12 11 10 35 35 H 1.08996 * 109.47070 * 315.77641 * 14 13 12 36 36 H 1.09003 * 109.47182 * 195.77413 * 14 13 12 37 37 H 1.09005 * 109.46903 * 185.05684 * 15 14 13 38 38 H 1.08997 * 109.46773 * 305.05142 * 15 14 13 39 39 H 1.08003 * 119.95599 * 0.02562 * 18 17 16 40 40 H 1.07999 * 119.95262 * 180.29661 * 19 18 17 41 41 H 1.08002 * 120.00888 * 179.97438 * 22 21 20 42 42 H 1.09002 * 110.57245 * 268.57681 * 24 23 21 43 43 H 1.08998 * 110.57498 * 145.70692 * 24 23 21 44 44 H 1.09001 * 109.48261 * 60.64795 * 26 13 12 45 45 H 1.08996 * 109.49120 * 180.71190 * 26 13 12 46 46 H 1.08992 * 109.48710 * 296.77734 * 27 10 9 47 47 H 1.08996 * 109.49345 * 56.84682 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 5.4508 -2.6249 -0.2378 12 6 5.9072 -4.0840 -0.3096 13 7 5.5603 -4.7654 0.9454 14 6 6.0500 -6.1503 0.9453 15 6 7.5610 -6.1570 1.1858 16 8 7.8369 -5.6598 2.4968 17 6 9.1425 -5.5992 2.8720 18 6 10.1351 -6.0154 1.9974 19 6 11.4632 -5.9497 2.3746 20 6 11.8058 -5.4779 3.6312 21 6 10.8105 -5.0647 4.5132 22 6 9.4805 -5.1264 4.1309 23 8 11.3996 -4.6483 5.6721 24 6 12.7324 -5.1924 5.6433 25 8 13.0194 -5.3200 4.2381 26 6 4.1108 -4.7193 1.1832 27 6 3.6544 -3.2602 1.2550 28 1 -0.4850 0.8401 -0.0004 29 1 3.8746 -0.6806 0.8904 30 1 3.8752 -0.6795 -0.8895 31 1 5.9692 -2.1215 0.5781 32 1 5.6813 -2.1250 -1.1786 33 1 6.9865 -4.1206 -0.4571 34 1 5.4091 -4.5803 -1.1425 35 1 5.8334 -6.6122 -0.0180 36 1 5.5536 -6.7113 1.7371 37 1 7.9386 -7.1757 1.0967 38 1 8.0494 -5.5225 0.4463 39 1 9.8703 -6.3871 1.0185 40 1 12.2347 -6.2699 1.6901 41 1 8.7069 -4.8069 4.8134 42 1 12.7586 -6.1676 6.1297 43 1 13.4359 -4.5080 6.1173 44 1 3.5924 -5.2228 0.3672 45 1 3.8806 -5.2191 2.1241 46 1 4.1525 -2.7639 2.0878 47 1 2.5751 -3.2237 1.4024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473728705.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:38 Heat of formation + Delta-G solvation = -44.950392 kcal Electronic energy + Delta-G solvation = -28306.569936 eV Core-core repulsion = 24263.592918 eV Total energy + Delta-G solvation = -4042.977018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.44125 -40.03877 -38.77395 -36.80085 -36.55771 -35.21932 -32.51412 -31.28947 -30.55471 -30.34128 -29.25240 -27.68533 -26.08093 -25.14289 -23.47424 -23.13727 -22.98104 -21.73514 -20.93852 -19.31712 -18.85240 -18.21202 -17.74679 -17.09785 -16.78603 -16.57060 -15.95044 -15.57481 -15.15089 -14.77198 -14.69046 -14.41043 -14.35143 -14.16174 -14.11052 -13.63615 -13.43894 -13.31710 -13.21427 -13.16217 -12.94431 -12.52662 -12.20126 -12.02744 -11.81235 -11.54730 -11.41510 -11.20277 -10.88850 -10.81317 -10.55689 -10.51630 -10.36038 -10.03022 -9.80817 -9.25522 -9.06889 -8.55949 -8.19848 -8.05908 -7.35306 -6.04557 -4.01822 0.81055 0.95528 2.29175 2.90815 3.24895 3.29699 3.35916 3.37225 3.40222 3.91972 4.17620 4.31293 4.43227 4.49935 4.54469 4.65103 4.75110 4.77698 4.86858 4.90708 5.03649 5.19757 5.21065 5.27878 5.28357 5.47699 5.51383 5.54932 5.67729 5.71689 5.77877 5.79770 5.86732 5.91116 5.95856 5.99386 6.11334 6.31858 6.51636 6.65358 6.73027 6.85305 6.98836 7.09501 7.20529 7.24761 7.60750 7.92035 8.06395 8.66658 9.03133 9.57457 11.08440 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016946 B = 0.002174 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.940581 B =12878.450821 C =13776.956419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.529 5.529 11 C 0.054 3.946 12 C 0.059 3.941 13 N -0.534 5.534 14 C 0.054 3.946 15 C 0.066 3.934 16 O -0.287 6.287 17 C 0.154 3.846 18 C -0.205 4.205 19 C -0.057 4.057 20 C -0.017 4.017 21 C 0.074 3.926 22 C -0.137 4.137 23 O -0.306 6.306 24 C 0.214 3.786 25 O -0.311 6.311 26 C 0.060 3.940 27 C 0.066 3.934 28 H 0.263 0.737 29 H -0.011 1.011 30 H 0.023 0.977 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.083 0.917 43 H 0.131 0.869 44 H 0.040 0.960 45 H 0.073 0.927 46 H 0.030 0.970 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.808 -16.520 6.584 30.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.254 5.254 11 C -0.075 4.075 12 C -0.069 4.069 13 N -0.259 5.259 14 C -0.075 4.075 15 C -0.009 4.009 16 O -0.200 6.200 17 C 0.108 3.892 18 C -0.224 4.224 19 C -0.076 4.076 20 C -0.060 4.060 21 C 0.030 3.970 22 C -0.156 4.156 23 O -0.222 6.222 24 C 0.102 3.898 25 O -0.227 6.227 26 C -0.067 4.067 27 C -0.062 4.062 28 H 0.073 0.927 29 H 0.007 0.993 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.160 0.840 40 H 0.154 0.846 41 H 0.163 0.837 42 H 0.101 0.899 43 H 0.148 0.852 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.049 0.951 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 24.599 -16.192 6.791 30.223 hybrid contribution 0.721 0.955 -0.031 1.197 sum 25.320 -15.237 6.760 30.315 Atomic orbital electron populations 1.69894 1.06110 1.26828 1.51150 1.24900 0.94744 0.98873 0.94853 0.86863 0.80359 0.84005 0.78556 1.20187 1.21212 1.19232 1.21020 0.88716 0.94669 1.50260 0.90191 1.20153 0.97036 0.84111 0.95087 1.62115 1.10289 1.19100 1.33925 1.22091 0.90295 0.94695 1.00428 1.22207 0.99312 0.95362 0.90028 1.62133 1.15199 1.13763 1.34844 1.22128 0.92854 0.91127 1.01344 1.22967 0.97338 0.98100 0.82532 1.86234 1.20415 1.79716 1.33613 1.18419 0.84093 0.94527 0.92191 1.21013 0.91702 1.08500 1.01221 1.19777 0.96234 0.98570 0.93006 1.19622 0.83134 1.06788 0.96503 1.19305 0.93365 0.98129 0.86247 1.19023 0.92681 1.07435 0.96475 1.87378 1.26666 1.70517 1.37666 1.25610 0.82157 0.99909 0.82103 1.87360 1.25868 1.89849 1.19672 1.22248 0.85907 0.98289 1.00302 1.22028 1.01780 0.91663 0.90731 0.92682 0.99296 0.95867 0.95028 0.91052 0.91362 0.94084 0.92257 0.89711 0.91647 0.91641 0.84049 0.84552 0.83731 0.89933 0.85191 0.94150 0.90831 0.95147 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.09 16 7 C -0.51 -14.45 9.03 -34.44 -0.31 -14.76 16 8 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 9 C 0.16 3.99 3.79 -4.98 -0.02 3.97 16 10 N -0.53 -11.16 4.70 -235.92 -1.11 -12.27 16 11 C 0.05 0.94 5.61 -3.77 -0.02 0.92 16 12 C 0.06 0.82 5.43 -3.77 -0.02 0.80 16 13 N -0.53 -7.37 4.59 -234.46 -1.08 -8.44 16 14 C 0.05 0.54 5.39 -3.82 -0.02 0.52 16 15 C 0.07 0.59 4.93 37.16 0.18 0.77 16 16 O -0.29 -3.32 10.09 -19.67 -0.20 -3.52 16 17 C 0.15 1.67 6.68 -39.26 -0.26 1.41 16 18 C -0.21 -1.82 9.03 -39.42 -0.36 -2.17 16 19 C -0.06 -0.51 10.05 -39.48 -0.40 -0.91 16 20 C -0.02 -0.18 7.15 -39.09 -0.28 -0.46 16 21 C 0.07 0.84 7.15 -39.10 -0.28 0.57 16 22 C -0.14 -1.56 10.00 -39.32 -0.39 -1.95 16 23 O -0.31 -3.27 11.40 -45.71 -0.52 -3.79 16 24 C 0.21 1.54 8.89 101.05 0.90 2.44 16 25 O -0.31 -3.12 11.41 -46.01 -0.52 -3.65 16 26 C 0.06 0.92 5.57 -3.77 -0.02 0.90 16 27 C 0.07 1.29 5.43 -3.77 -0.02 1.27 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 30 H 0.02 0.57 7.45 -51.92 -0.39 0.18 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 33 H 0.07 0.80 6.71 -51.93 -0.35 0.45 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.52 7.99 -51.93 -0.42 0.11 16 36 H 0.08 0.82 7.84 -51.93 -0.41 0.42 16 37 H 0.07 0.42 7.65 -51.93 -0.40 0.02 16 38 H 0.07 0.56 6.26 -51.93 -0.33 0.23 16 39 H 0.14 0.92 6.29 -52.48 -0.33 0.59 16 40 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.07 1.00 8.00 -51.93 -0.42 0.59 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 1.97 6.79 -51.93 -0.35 1.62 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -33.41 374.84 -10.20 -43.61 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -7.11 Total: -2.96 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -1.42 Total: -4.81 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -1.41 Total: -47.55 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -1.24 Total: -10.96 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.41 -10.20 -43.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473728705.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.338 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds