Wall clock time and date at job start Tue Mar 31 2020 21:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99591 * 2 1 4 4 H 1.48498 * 109.47292 * 269.99857 * 3 2 1 5 5 H 1.48504 * 109.47279 * 29.99955 * 3 2 1 6 6 H 1.48495 * 109.46704 * 149.99941 * 3 2 1 7 7 C 1.37870 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00151 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00248 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.46956 * 110.99711 * 169.99669 * 10 9 7 12 12 C 1.53053 * 109.36136 * 183.18735 * 11 10 9 13 13 N 1.46955 * 109.36631 * 301.60355 * 12 11 10 14 14 C 1.46900 * 111.00071 * 183.18822 * 13 12 11 15 15 C 1.53005 * 109.47015 * 75.77677 * 14 13 12 16 16 O 1.42894 * 109.47452 * 65.05586 * 15 14 13 17 17 C 1.35979 * 117.00012 * 180.02562 * 16 15 14 18 18 C 1.38690 * 119.98901 * 359.72451 * 17 16 15 19 19 C 1.38219 * 120.08800 * 179.74484 * 18 17 16 20 20 C 1.38532 * 120.09395 * 0.50947 * 19 18 17 21 21 C 1.39256 * 119.92016 * 359.76391 * 20 19 18 22 22 C 1.38530 * 119.88197 * 359.97438 * 21 20 19 23 23 O 1.36507 * 108.64671 * 179.97438 * 21 20 19 24 24 C 1.43983 * 105.49881 * 342.71046 * 23 21 20 25 25 O 1.36597 * 131.45912 * 179.73980 * 20 19 18 26 26 C 1.46956 * 110.88495 * 59.31621 * 13 12 11 27 27 C 1.46955 * 110.99742 * 293.79823 * 10 9 7 28 28 H 0.97003 * 120.00037 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47449 * 59.99379 * 9 7 2 30 30 H 1.09007 * 109.46630 * 299.99919 * 9 7 2 31 31 H 1.08993 * 109.48768 * 63.22680 * 11 10 9 32 32 H 1.08996 * 109.50680 * 303.16396 * 11 10 9 33 33 H 1.08996 * 109.49026 * 181.62884 * 12 11 10 34 34 H 1.09004 * 109.48951 * 61.57014 * 12 11 10 35 35 H 1.08996 * 109.47070 * 315.77641 * 14 13 12 36 36 H 1.09003 * 109.47182 * 195.77413 * 14 13 12 37 37 H 1.09005 * 109.46903 * 185.05684 * 15 14 13 38 38 H 1.08997 * 109.46773 * 305.05142 * 15 14 13 39 39 H 1.08003 * 119.95599 * 0.02562 * 18 17 16 40 40 H 1.07999 * 119.95262 * 180.29661 * 19 18 17 41 41 H 1.08002 * 120.00888 * 179.97438 * 22 21 20 42 42 H 1.09002 * 110.57245 * 268.57681 * 24 23 21 43 43 H 1.08998 * 110.57498 * 145.70692 * 24 23 21 44 44 H 1.09001 * 109.48261 * 60.64795 * 26 13 12 45 45 H 1.08996 * 109.49120 * 180.71190 * 26 13 12 46 46 H 1.08992 * 109.48710 * 296.77734 * 27 10 9 47 47 H 1.08996 * 109.49345 * 56.84682 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 5.4508 -2.6249 -0.2378 12 6 5.9072 -4.0840 -0.3096 13 7 5.5603 -4.7654 0.9454 14 6 6.0500 -6.1503 0.9453 15 6 7.5610 -6.1570 1.1858 16 8 7.8369 -5.6598 2.4968 17 6 9.1425 -5.5992 2.8720 18 6 10.1351 -6.0154 1.9974 19 6 11.4632 -5.9497 2.3746 20 6 11.8058 -5.4779 3.6312 21 6 10.8105 -5.0647 4.5132 22 6 9.4805 -5.1264 4.1309 23 8 11.3996 -4.6483 5.6721 24 6 12.7324 -5.1924 5.6433 25 8 13.0194 -5.3200 4.2381 26 6 4.1108 -4.7193 1.1832 27 6 3.6544 -3.2602 1.2550 28 1 -0.4850 0.8401 -0.0004 29 1 3.8746 -0.6806 0.8904 30 1 3.8752 -0.6795 -0.8895 31 1 5.9692 -2.1215 0.5781 32 1 5.6813 -2.1250 -1.1786 33 1 6.9865 -4.1206 -0.4571 34 1 5.4091 -4.5803 -1.1425 35 1 5.8334 -6.6122 -0.0180 36 1 5.5536 -6.7113 1.7371 37 1 7.9386 -7.1757 1.0967 38 1 8.0494 -5.5225 0.4463 39 1 9.8703 -6.3871 1.0185 40 1 12.2347 -6.2699 1.6901 41 1 8.7069 -4.8069 4.8134 42 1 12.7586 -6.1676 6.1297 43 1 13.4359 -4.5080 6.1173 44 1 3.5924 -5.2228 0.3672 45 1 3.8806 -5.2191 2.1241 46 1 4.1525 -2.7639 2.0878 47 1 2.5751 -3.2237 1.4024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473728705.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:32 Heat of formation + Delta-G solvation = -69.909193 kcal Electronic energy + Delta-G solvation = -28307.652231 eV Core-core repulsion = 24263.592918 eV Total energy + Delta-G solvation = -4044.059313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.42 seconds Orbital eigenvalues (eV) -43.12314 -40.82351 -40.01438 -37.62810 -37.27112 -36.55882 -34.58656 -32.20097 -31.83264 -31.37728 -30.15685 -29.17031 -26.68087 -26.54279 -24.46925 -24.34759 -23.75861 -23.11662 -22.22940 -20.66672 -19.61117 -18.94566 -18.88914 -18.41440 -17.77441 -17.54561 -16.69245 -16.67005 -16.33311 -15.95382 -15.92917 -15.70138 -15.47353 -15.25882 -15.04384 -14.97466 -14.87548 -14.41255 -14.02639 -13.97947 -13.88470 -13.77289 -13.53503 -13.08542 -13.02152 -12.98154 -12.65472 -12.34811 -12.28095 -12.16244 -12.01561 -11.84575 -11.67131 -11.48851 -11.24930 -11.15178 -10.78884 -9.81411 -9.27321 -9.03668 -8.77699 -8.29527 -6.32703 0.08668 0.21896 1.33309 1.35092 1.45826 1.62809 2.25787 2.33185 2.55041 2.71154 2.91516 3.03119 3.22182 3.46922 3.81293 3.83217 3.95032 3.97628 4.01154 4.12305 4.19819 4.26536 4.29544 4.36581 4.38271 4.44546 4.49543 4.53960 4.58794 4.66662 4.78966 4.80723 4.84331 4.95003 4.97567 5.01474 5.04703 5.08690 5.13208 5.18204 5.21404 5.26823 5.51675 5.93057 6.02612 6.06663 6.17087 6.36206 6.49129 6.64287 6.72850 7.30919 8.86808 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016946 B = 0.002174 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.940581 B =12878.450821 C =13776.956419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.008 3.992 3 Si 0.947 3.053 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.515 4.515 8 H 0.039 0.961 9 C 0.172 3.828 10 N -0.542 5.542 11 C 0.050 3.950 12 C 0.067 3.933 13 N -0.547 5.547 14 C 0.053 3.947 15 C 0.063 3.937 16 O -0.310 6.310 17 C 0.145 3.855 18 C -0.195 4.195 19 C -0.055 4.055 20 C -0.030 4.030 21 C 0.057 3.943 22 C -0.158 4.158 23 O -0.327 6.327 24 C 0.205 3.795 25 O -0.323 6.323 26 C 0.073 3.927 27 C 0.069 3.931 28 H 0.267 0.733 29 H -0.019 1.019 30 H 0.029 0.971 31 H 0.023 0.977 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.172 0.828 40 H 0.163 0.837 41 H 0.135 0.865 42 H 0.105 0.895 43 H 0.159 0.841 44 H 0.038 0.962 45 H 0.089 0.911 46 H 0.018 0.982 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.930 -17.490 5.554 33.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.553 4.553 8 H 0.058 0.942 9 C 0.045 3.955 10 N -0.267 5.267 11 C -0.078 4.078 12 C -0.061 4.061 13 N -0.272 5.272 14 C -0.074 4.074 15 C -0.012 4.012 16 O -0.224 6.224 17 C 0.098 3.902 18 C -0.213 4.213 19 C -0.074 4.074 20 C -0.074 4.074 21 C 0.012 3.988 22 C -0.178 4.178 23 O -0.244 6.244 24 C 0.095 3.905 25 O -0.241 6.241 26 C -0.055 4.055 27 C -0.060 4.060 28 H 0.076 0.924 29 H -0.001 1.001 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.189 0.811 40 H 0.180 0.820 41 H 0.153 0.847 42 H 0.122 0.878 43 H 0.176 0.824 44 H 0.057 0.943 45 H 0.107 0.893 46 H 0.036 0.964 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 27.749 -17.194 5.761 33.149 hybrid contribution -0.262 1.158 0.329 1.232 sum 27.487 -16.036 6.089 32.400 Atomic orbital electron populations 1.70043 1.07996 1.28100 1.52546 1.25829 0.95630 1.03064 0.94403 0.85724 0.79156 0.78776 0.79332 1.18706 1.20657 1.18073 1.21226 0.90912 0.93293 1.49855 0.94227 1.19912 0.94391 0.86497 0.94718 1.62050 1.13108 1.16881 1.34646 1.22239 0.87488 0.97655 1.00401 1.22163 1.01031 0.92743 0.90165 1.62104 1.13618 1.16543 1.34948 1.22252 0.93772 0.88751 1.02634 1.23145 0.96331 1.00068 0.81623 1.86203 1.20895 1.80230 1.35036 1.18521 0.84387 0.94990 0.92286 1.21313 0.91033 1.07156 1.01837 1.20164 0.97047 0.97503 0.92666 1.19929 0.83135 1.07177 0.97150 1.19474 0.93653 0.98822 0.86855 1.19132 0.92759 1.08628 0.97234 1.87335 1.28163 1.71107 1.37779 1.26097 0.81313 1.01866 0.81243 1.87323 1.25817 1.89970 1.20955 1.22038 0.87398 0.94893 1.01144 1.21952 0.99754 0.94490 0.89785 0.92397 1.00131 0.95263 0.95900 0.90165 0.88249 0.93846 0.90129 0.89433 0.88436 0.90758 0.81110 0.81956 0.84717 0.87797 0.82351 0.94350 0.89277 0.96368 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16 2 C 0.01 0.48 5.47 84.65 0.46 0.94 16 3 Si 0.95 44.98 27.47 68.60 1.88 46.87 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.65 6.54 99.48 0.65 -11.00 16 7 C -0.51 -30.30 9.03 25.60 0.23 -30.07 16 8 H 0.04 2.58 7.37 -2.91 -0.02 2.56 16 9 C 0.17 8.53 3.79 85.56 0.32 8.86 16 10 N -0.54 -23.01 4.70 -900.30 -4.23 -27.24 16 11 C 0.05 1.69 5.61 86.31 0.48 2.17 16 12 C 0.07 1.68 5.43 86.31 0.47 2.15 16 13 N -0.55 -13.88 4.59 -895.71 -4.11 -17.99 16 14 C 0.05 0.90 5.39 86.30 0.46 1.36 16 15 C 0.06 0.87 4.93 71.98 0.35 1.23 16 16 O -0.31 -6.53 10.09 -93.31 -0.94 -7.47 16 17 C 0.14 2.90 6.68 22.48 0.15 3.05 16 18 C -0.19 -2.84 9.03 22.37 0.20 -2.64 16 19 C -0.06 -0.85 10.05 22.34 0.22 -0.62 16 20 C -0.03 -0.60 7.15 22.58 0.16 -0.44 16 21 C 0.06 1.28 7.15 22.58 0.16 1.44 16 22 C -0.16 -3.62 10.00 22.44 0.22 -3.39 16 23 O -0.33 -6.98 11.40 -76.13 -0.87 -7.85 16 24 C 0.21 2.72 8.89 113.37 1.01 3.73 16 25 O -0.32 -6.08 11.41 -77.20 -0.88 -6.96 16 26 C 0.07 2.19 5.57 86.31 0.48 2.67 16 27 C 0.07 2.75 5.43 86.31 0.47 3.22 16 28 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 29 H -0.02 -0.96 7.18 -2.39 -0.02 -0.98 16 30 H 0.03 1.41 7.45 -2.38 -0.02 1.40 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 33 H 0.10 1.92 6.71 -2.39 -0.02 1.90 16 34 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.08 1.07 7.99 -2.39 -0.02 1.05 16 36 H 0.09 1.45 7.84 -2.39 -0.02 1.43 16 37 H 0.10 0.76 7.65 -2.38 -0.02 0.74 16 38 H 0.07 0.91 6.26 -2.39 -0.01 0.89 16 39 H 0.17 1.38 6.29 -2.91 -0.02 1.36 16 40 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 42 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.16 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 2.37 8.00 -2.39 -0.02 2.35 16 46 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 47 H 0.06 2.69 6.79 -2.39 -0.02 2.67 16 Total: -1.00 -75.74 374.84 -2.06 -77.80 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.91 Total: 8.59 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 5.87 Total: -6.34 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -8.04 Total: -104.63 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -2.69 Total: -22.28 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.87 kcal Total: -75.74 -2.06 -77.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473728705.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.891 kcal (2) G-P(sol) polarization free energy of solvation -75.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.42 seconds