Wall clock time and date at job start Wed Apr 1 2020 00:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48494 * 109.46968 * 269.99607 * 3 2 1 5 5 H 1.48498 * 109.47420 * 29.99860 * 3 2 1 6 6 H 1.48502 * 109.46921 * 149.99850 * 3 2 1 7 7 C 1.38656 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00167 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99528 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99535 * 185.05706 * 9 7 2 11 11 C 1.38876 * 120.07089 * 354.46264 * 10 9 7 12 12 C 1.38105 * 119.93265 * 179.97438 * 11 10 9 13 13 C 1.38300 * 120.06787 * 0.02962 * 12 11 10 14 14 C 1.50694 * 119.93123 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.47077 * 89.99593 * 14 13 12 16 16 C 1.34780 * 119.99825 * 180.02562 * 15 14 13 17 17 O 1.21590 * 120.00139 * 359.97438 * 16 15 14 18 18 N 1.34784 * 120.00008 * 179.97438 * 16 15 14 19 19 C 1.44579 * 118.64172 * 359.97438 * 18 16 15 20 20 C 1.54861 * 109.59798 * 270.72514 * 19 18 16 21 21 C 1.47098 * 110.32442 * 288.73215 * 20 19 18 22 22 C 1.52570 * 114.32148 * 62.80811 * 21 20 19 23 23 H 1.09000 * 109.49302 * 34.97390 * 22 21 20 24 24 O 1.42899 * 109.48881 * 155.02255 * 22 21 20 25 25 C 1.50886 * 109.35336 * 274.98453 * 22 21 20 26 26 C 1.47598 * 118.64322 * 180.02562 * 18 16 15 27 27 C 1.38305 * 120.13706 * 0.22501 * 13 12 11 28 28 C 1.38097 * 120.06930 * 359.49244 * 27 13 12 29 29 H 0.97004 * 120.00259 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.03656 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96720 * 179.97438 * 12 11 10 32 32 H 1.09002 * 109.47430 * 329.99522 * 14 13 12 33 33 H 1.09000 * 109.47539 * 209.99798 * 14 13 12 34 34 H 0.96997 * 120.00358 * 359.97438 * 15 14 13 35 35 H 1.09000 * 109.45074 * 150.68426 * 19 18 16 36 36 H 1.09002 * 109.42521 * 30.75078 * 19 18 16 37 37 H 1.09005 * 109.32805 * 168.46868 * 20 19 18 38 38 H 1.09000 * 109.33199 * 49.00053 * 20 19 18 39 39 H 1.08996 * 108.50884 * 301.55261 * 21 20 19 40 40 H 1.08997 * 108.39018 * 183.96850 * 21 20 19 41 41 H 0.96698 * 114.00246 * 179.97438 * 24 22 21 42 42 H 1.09003 * 109.36409 * 212.08023 * 25 22 21 43 43 H 1.08999 * 109.36901 * 331.69326 * 25 22 21 44 44 H 1.08993 * 108.95022 * 258.55101 * 26 18 16 45 45 H 1.09001 * 108.95060 * 17.27307 * 26 18 16 46 46 H 1.08006 * 119.96513 * 179.72846 * 27 13 12 47 47 H 1.08000 * 120.03197 * 180.25196 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0463 -1.4000 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0699 -3.5045 0.1077 11 6 3.4570 -3.4394 0.0952 12 6 4.2022 -4.5970 0.2050 13 6 3.5684 -5.8202 0.3266 14 6 4.3845 -7.0814 0.4455 15 7 4.6551 -7.3565 1.8588 16 6 5.3743 -8.4414 2.2085 17 8 5.7982 -9.1921 1.3510 18 7 5.6237 -8.6942 3.5087 19 6 5.1061 -7.7819 4.5038 20 6 6.1390 -6.6582 4.7655 21 6 7.2980 -7.1902 5.4987 22 6 8.0842 -8.2570 4.7426 23 1 8.0808 -8.0249 3.6776 24 8 9.4307 -8.2850 5.2202 25 6 7.4424 -9.6040 4.9668 26 6 6.4149 -9.8904 3.8578 27 6 2.1871 -5.8888 0.3340 28 6 1.4364 -4.7343 0.2305 29 1 -0.4851 0.8401 -0.0004 30 1 3.9526 -2.4845 0.0006 31 1 5.2810 -4.5471 0.1949 32 1 5.3272 -6.9558 -0.0871 33 1 3.8310 -7.9146 0.0127 34 1 4.3173 -6.7574 2.5429 35 1 4.9173 -8.3243 5.4302 36 1 4.1755 -7.3430 4.1440 37 1 5.6716 -5.8683 5.3536 38 1 6.4727 -6.2459 3.8132 39 1 6.9467 -7.6191 6.4371 40 1 7.9695 -6.3626 5.7276 41 1 9.9895 -8.9420 4.7831 42 1 8.2110 -10.3768 4.9559 43 1 6.9413 -9.6090 5.9348 44 1 5.7389 -10.6753 4.1969 45 1 6.9425 -10.2375 2.9694 46 1 1.6950 -6.8460 0.4247 47 1 0.3578 -4.7882 0.2405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477762658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:46 Heat of formation + Delta-G solvation = -79.333921 kcal Electronic energy + Delta-G solvation = -28604.282492 eV Core-core repulsion = 24559.814492 eV Total energy + Delta-G solvation = -4044.468000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 7.11 seconds Orbital eigenvalues (eV) -40.79805 -39.21100 -38.57686 -36.93110 -36.18893 -34.59246 -33.37086 -32.50315 -32.12554 -30.29669 -29.71470 -26.99260 -25.94500 -25.31576 -24.53078 -22.22063 -22.06702 -20.90191 -20.66204 -19.66017 -18.45449 -18.08239 -17.40730 -17.08021 -16.84749 -15.88075 -15.35193 -15.22051 -14.80598 -14.73063 -14.52507 -14.18316 -14.02652 -13.94786 -13.76620 -13.71518 -13.33420 -13.16222 -12.97637 -12.79771 -12.58926 -12.16443 -11.97937 -11.69427 -11.66987 -11.55495 -11.39220 -11.12661 -10.97471 -10.80837 -10.79586 -10.69596 -10.50486 -10.31119 -10.09749 -9.44368 -9.10222 -8.92963 -8.63209 -8.30121 -7.34883 -6.54624 -4.13543 2.00411 2.11442 2.67717 3.07424 3.08344 3.13123 3.16622 3.75487 3.88863 3.94689 4.33568 4.44098 4.51683 4.57136 4.67055 4.78089 4.96806 5.00448 5.02901 5.14756 5.20444 5.25922 5.30907 5.42598 5.44551 5.52707 5.57375 5.65577 5.69833 5.73642 5.80664 5.84106 5.91661 5.97631 6.10567 6.33807 6.36808 6.55771 6.60025 6.77997 6.81010 6.95784 7.13702 7.26313 7.31548 7.33601 7.69772 7.90033 7.93713 8.56704 8.90764 9.58845 10.62858 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.002373 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.582158 B =11794.785775 C =12834.701492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.214 4.214 14 C 0.196 3.804 15 N -0.736 5.736 16 C 0.699 3.301 17 O -0.597 6.597 18 N -0.627 5.627 19 C 0.108 3.892 20 C -0.140 4.140 21 C -0.111 4.111 22 C 0.110 3.890 23 H 0.058 0.942 24 O -0.571 6.571 25 C -0.163 4.163 26 C 0.131 3.869 27 C -0.054 4.054 28 C -0.196 4.196 29 H 0.271 0.729 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.378 0.622 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.092 0.908 46 H 0.112 0.888 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.608 -15.900 10.733 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.256 4.256 12 C -0.069 4.069 13 C -0.216 4.216 14 C 0.073 3.927 15 N -0.393 5.393 16 C 0.401 3.599 17 O -0.476 6.476 18 N -0.364 5.364 19 C -0.016 4.016 20 C -0.179 4.179 21 C -0.148 4.148 22 C 0.051 3.949 23 H 0.076 0.924 24 O -0.377 6.377 25 C -0.202 4.202 26 C 0.008 3.992 27 C -0.073 4.073 28 C -0.215 4.215 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.234 0.766 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.225 0.775 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.130 0.870 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.227 -15.746 10.466 22.516 hybrid contribution 0.465 0.754 0.036 0.887 sum 12.693 -14.992 10.502 22.274 Atomic orbital electron populations 1.70034 1.06013 1.27883 1.45424 1.25316 0.95856 0.98934 0.96340 0.85698 0.78940 0.79923 0.78820 1.19789 1.20178 1.19120 1.21354 0.91866 0.80723 1.53014 0.88919 1.83979 1.34505 1.11564 1.77522 1.19441 0.90320 0.88049 0.91614 1.21157 0.93764 0.98945 1.11748 1.20641 0.98363 0.91615 0.96233 1.19219 0.93555 0.93637 1.15168 1.19839 0.98273 0.94614 0.79949 1.45714 1.57172 1.26736 1.09666 1.16046 0.79395 0.81921 0.82557 1.90889 1.57649 1.50124 1.48906 1.46919 1.57183 1.27637 1.04671 1.21573 0.96233 0.90932 0.92893 1.21292 0.96316 0.98368 1.01922 1.20320 0.96724 0.98760 0.99011 1.21223 0.81655 0.94273 0.97765 0.92352 1.86507 1.21772 1.62815 1.66614 1.22552 0.99329 0.98540 0.99734 1.21567 0.93017 0.85717 0.98864 1.20536 0.92770 0.96808 0.97150 1.20217 0.99664 0.90252 1.11353 0.91868 0.85441 0.87435 0.91802 0.91744 0.76566 0.90077 0.90295 0.89732 0.91146 0.91663 0.91082 0.77524 0.90018 0.90866 0.91940 0.89005 0.86973 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.49 13.67 55.48 0.76 -23.73 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.87 29.55 -169.99 -5.02 14.84 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.39 -10.60 9.49 30.89 0.29 -10.30 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.75 9.76 0.05 0.00 -4.75 16 10 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 11 C -0.24 -4.83 9.17 -39.39 -0.36 -5.19 16 12 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 13 C -0.21 -3.37 5.25 -104.58 -0.55 -3.92 16 14 C 0.20 2.75 5.80 -5.20 -0.03 2.72 16 15 N -0.74 -9.29 5.38 -66.41 -0.36 -9.64 16 16 C 0.70 9.37 8.22 -86.91 -0.71 8.65 16 17 O -0.60 -10.12 15.62 5.29 0.08 -10.04 16 18 N -0.63 -6.26 2.24 -178.32 -0.40 -6.66 16 19 C 0.11 0.84 5.14 -4.09 -0.02 0.82 16 20 C -0.14 -1.10 5.73 -28.58 -0.16 -1.26 16 21 C -0.11 -0.90 4.85 -29.78 -0.14 -1.04 16 22 C 0.11 0.92 3.08 -28.01 -0.09 0.84 16 23 H 0.06 0.60 7.48 -51.93 -0.39 0.21 16 24 O -0.57 -4.98 13.22 -35.23 -0.47 -5.45 16 25 C -0.16 -1.09 5.42 -27.34 -0.15 -1.24 16 26 C 0.13 1.12 6.09 -2.98 -0.02 1.10 16 27 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 28 C -0.20 -3.87 9.99 -39.39 -0.39 -4.27 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.13 2.62 5.64 -52.48 -0.30 2.33 16 31 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.40 4.51 6.08 -40.82 -0.25 4.26 16 35 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 36 H 0.08 0.61 6.23 -51.93 -0.32 0.28 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.47 7.36 -51.93 -0.38 0.09 16 40 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 41 H 0.38 1.81 8.95 45.56 0.41 2.22 16 42 H 0.08 0.43 7.90 -51.93 -0.41 0.02 16 43 H 0.07 0.46 7.32 -51.93 -0.38 0.08 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.94 6.95 -51.93 -0.36 0.58 16 46 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 47 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 378.84 15.07 5.71 5.71 Total: -1.00 -32.52 378.84 -9.16 -41.68 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.00 Total: 9.25 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -3.46 Total: -11.20 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.00 Total: -40.04 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.38 Total: -20.24 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.52 -9.16 -41.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477762658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.657 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.11 seconds