Wall clock time and date at job start Wed Apr 1 2020 00:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48494 * 109.46968 * 269.99607 * 3 2 1 5 5 H 1.48498 * 109.47420 * 29.99860 * 3 2 1 6 6 H 1.48502 * 109.46921 * 149.99850 * 3 2 1 7 7 C 1.38656 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00167 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99528 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99535 * 185.05706 * 9 7 2 11 11 C 1.38876 * 120.07089 * 354.46264 * 10 9 7 12 12 C 1.38105 * 119.93265 * 179.97438 * 11 10 9 13 13 C 1.38300 * 120.06787 * 0.02962 * 12 11 10 14 14 C 1.50694 * 119.93123 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.47077 * 89.99593 * 14 13 12 16 16 C 1.34780 * 119.99825 * 180.02562 * 15 14 13 17 17 O 1.21590 * 120.00139 * 359.97438 * 16 15 14 18 18 N 1.34784 * 120.00008 * 179.97438 * 16 15 14 19 19 C 1.44579 * 118.64172 * 359.97438 * 18 16 15 20 20 C 1.54861 * 109.59798 * 270.72514 * 19 18 16 21 21 C 1.47098 * 110.32442 * 288.73215 * 20 19 18 22 22 C 1.52570 * 114.32148 * 62.80811 * 21 20 19 23 23 H 1.09000 * 109.49302 * 34.97390 * 22 21 20 24 24 O 1.42899 * 109.48881 * 155.02255 * 22 21 20 25 25 C 1.50886 * 109.35336 * 274.98453 * 22 21 20 26 26 C 1.47598 * 118.64322 * 180.02562 * 18 16 15 27 27 C 1.38305 * 120.13706 * 0.22501 * 13 12 11 28 28 C 1.38097 * 120.06930 * 359.49244 * 27 13 12 29 29 H 0.97004 * 120.00259 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.03656 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96720 * 179.97438 * 12 11 10 32 32 H 1.09002 * 109.47430 * 329.99522 * 14 13 12 33 33 H 1.09000 * 109.47539 * 209.99798 * 14 13 12 34 34 H 0.96997 * 120.00358 * 359.97438 * 15 14 13 35 35 H 1.09000 * 109.45074 * 150.68426 * 19 18 16 36 36 H 1.09002 * 109.42521 * 30.75078 * 19 18 16 37 37 H 1.09005 * 109.32805 * 168.46868 * 20 19 18 38 38 H 1.09000 * 109.33199 * 49.00053 * 20 19 18 39 39 H 1.08996 * 108.50884 * 301.55261 * 21 20 19 40 40 H 1.08997 * 108.39018 * 183.96850 * 21 20 19 41 41 H 0.96698 * 114.00246 * 179.97438 * 24 22 21 42 42 H 1.09003 * 109.36409 * 212.08023 * 25 22 21 43 43 H 1.08999 * 109.36901 * 331.69326 * 25 22 21 44 44 H 1.08993 * 108.95022 * 258.55101 * 26 18 16 45 45 H 1.09001 * 108.95060 * 17.27307 * 26 18 16 46 46 H 1.08006 * 119.96513 * 179.72846 * 27 13 12 47 47 H 1.08000 * 120.03197 * 180.25196 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0463 -1.4000 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0699 -3.5045 0.1077 11 6 3.4570 -3.4394 0.0952 12 6 4.2022 -4.5970 0.2050 13 6 3.5684 -5.8202 0.3266 14 6 4.3845 -7.0814 0.4455 15 7 4.6551 -7.3565 1.8588 16 6 5.3743 -8.4414 2.2085 17 8 5.7982 -9.1921 1.3510 18 7 5.6237 -8.6942 3.5087 19 6 5.1061 -7.7819 4.5038 20 6 6.1390 -6.6582 4.7655 21 6 7.2980 -7.1902 5.4987 22 6 8.0842 -8.2570 4.7426 23 1 8.0808 -8.0249 3.6776 24 8 9.4307 -8.2850 5.2202 25 6 7.4424 -9.6040 4.9668 26 6 6.4149 -9.8904 3.8578 27 6 2.1871 -5.8888 0.3340 28 6 1.4364 -4.7343 0.2305 29 1 -0.4851 0.8401 -0.0004 30 1 3.9526 -2.4845 0.0006 31 1 5.2810 -4.5471 0.1949 32 1 5.3272 -6.9558 -0.0871 33 1 3.8310 -7.9146 0.0127 34 1 4.3173 -6.7574 2.5429 35 1 4.9173 -8.3243 5.4302 36 1 4.1755 -7.3430 4.1440 37 1 5.6716 -5.8683 5.3536 38 1 6.4727 -6.2459 3.8132 39 1 6.9467 -7.6191 6.4371 40 1 7.9695 -6.3626 5.7276 41 1 9.9895 -8.9420 4.7831 42 1 8.2110 -10.3768 4.9559 43 1 6.9413 -9.6090 5.9348 44 1 5.7389 -10.6753 4.1969 45 1 6.9425 -10.2375 2.9694 46 1 1.6950 -6.8460 0.4247 47 1 0.3578 -4.7882 0.2405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477762658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:34 Heat of formation + Delta-G solvation = -101.827111 kcal Electronic energy + Delta-G solvation = -28605.257870 eV Core-core repulsion = 24559.814492 eV Total energy + Delta-G solvation = -4045.443378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -41.70323 -40.79959 -39.45347 -38.48882 -36.98886 -35.78046 -34.29137 -34.11635 -32.99443 -31.83028 -31.07677 -27.90625 -27.47006 -26.37893 -25.63711 -23.64066 -23.08035 -22.12428 -21.55367 -20.59402 -19.86781 -19.32811 -18.79496 -18.07366 -17.76946 -16.83263 -16.43440 -16.38818 -16.11827 -16.06696 -15.78776 -15.53338 -15.26233 -15.13775 -14.69773 -14.65942 -14.52807 -14.34001 -14.19277 -13.82134 -13.64347 -13.48093 -13.23143 -13.02110 -12.69407 -12.55880 -12.36451 -12.31964 -12.24512 -12.14781 -12.10594 -11.76067 -11.47298 -11.19918 -11.18704 -10.93365 -10.80350 -10.17839 -9.80941 -9.47065 -9.01647 -8.48085 -6.16176 0.53140 0.58176 1.36232 1.43919 1.53025 1.74498 2.13890 2.17269 2.75879 3.02051 3.18855 3.26271 3.48851 3.72035 3.85081 3.87532 3.96272 4.03623 4.06502 4.15361 4.17808 4.33025 4.42521 4.46933 4.57223 4.58252 4.71115 4.73252 4.81226 4.85127 4.89358 4.96036 5.04606 5.09769 5.14576 5.15098 5.22060 5.26921 5.34179 5.47305 5.53435 5.64028 5.69408 5.76128 5.92166 6.01755 6.16292 6.84525 6.96732 6.97303 7.55060 7.76085 8.74672 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.002373 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.582158 B =11794.785775 C =12834.701492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.228 6.228 10 C 0.123 3.877 11 C -0.242 4.242 12 C -0.045 4.045 13 C -0.181 4.181 14 C 0.202 3.798 15 N -0.731 5.731 16 C 0.697 3.303 17 O -0.635 6.635 18 N -0.619 5.619 19 C 0.105 3.895 20 C -0.135 4.135 21 C -0.111 4.111 22 C 0.110 3.890 23 H 0.034 0.966 24 O -0.586 6.586 25 C -0.151 4.151 26 C 0.129 3.871 27 C -0.042 4.042 28 C -0.203 4.203 29 H 0.273 0.727 30 H 0.120 0.880 31 H 0.136 0.864 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.406 0.594 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.393 0.607 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.147 0.853 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.557 -17.813 12.324 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.134 6.134 10 C 0.072 3.928 11 C -0.262 4.262 12 C -0.063 4.063 13 C -0.183 4.183 14 C 0.079 3.921 15 N -0.388 5.388 16 C 0.398 3.602 17 O -0.517 6.517 18 N -0.355 5.355 19 C -0.018 4.018 20 C -0.173 4.173 21 C -0.148 4.148 22 C 0.052 3.948 23 H 0.052 0.948 24 O -0.395 6.395 25 C -0.190 4.190 26 C 0.007 3.993 27 C -0.061 4.061 28 C -0.223 4.223 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.154 0.846 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.244 0.756 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.242 0.758 42 H 0.117 0.883 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.165 0.835 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.219 -17.715 12.097 25.736 hybrid contribution 0.036 0.947 -0.407 1.031 sum 14.256 -16.768 11.690 24.921 Atomic orbital electron populations 1.70175 1.08009 1.28853 1.48606 1.26558 0.96804 1.02702 0.95809 0.84611 0.77894 0.74694 0.79206 1.18973 1.19659 1.17552 1.21821 0.92553 0.81344 1.53190 0.87934 1.83949 1.36026 1.12650 1.80811 1.19987 0.91585 0.87964 0.93232 1.21226 0.93016 0.99980 1.11951 1.20911 0.99679 0.90767 0.94968 1.19478 0.93488 0.94042 1.11246 1.19714 0.97998 0.93424 0.80967 1.45464 1.57277 1.26913 1.09170 1.16170 0.79160 0.81531 0.83352 1.90867 1.59137 1.51363 1.50340 1.46990 1.56589 1.28098 1.03846 1.21761 0.96068 0.90787 0.93235 1.21246 0.96333 0.98675 1.01089 1.20344 0.96514 0.98356 0.99622 1.21185 0.81919 0.95378 0.96354 0.94766 1.86477 1.22176 1.63817 1.66990 1.22465 0.99152 0.97927 0.99424 1.21681 0.93452 0.85473 0.98683 1.20870 0.92983 0.96995 0.95213 1.20446 1.00093 0.90347 1.11374 0.91802 0.86238 0.84606 0.91664 0.91170 0.75646 0.87673 0.89929 0.88426 0.93115 0.90204 0.92395 0.75759 0.88335 0.89507 0.90477 0.90983 0.83515 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.13 13.67 21.61 0.30 -54.84 16 2 C -0.02 -1.15 5.49 84.83 0.47 -0.69 16 3 Si 1.02 41.69 29.55 68.60 2.03 43.72 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 6 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.41 -23.26 9.49 67.92 0.64 -22.62 16 8 H 0.10 5.27 5.20 -2.91 -0.02 5.26 16 9 O -0.23 -13.23 9.76 -22.73 -0.22 -13.46 16 10 C 0.12 5.80 6.65 22.58 0.15 5.95 16 11 C -0.24 -9.87 9.17 22.39 0.21 -9.67 16 12 C -0.04 -1.42 9.69 22.25 0.22 -1.21 16 13 C -0.18 -5.18 5.25 -19.84 -0.10 -5.29 16 14 C 0.20 5.03 5.80 85.63 0.50 5.53 16 15 N -0.73 -16.41 5.38 -482.29 -2.60 -19.00 16 16 C 0.70 17.18 8.22 179.05 1.47 18.65 16 17 O -0.64 -20.62 15.62 -4.00 -0.06 -20.68 16 18 N -0.62 -10.86 2.24 -836.32 -1.87 -12.73 16 19 C 0.10 1.30 5.14 87.37 0.45 1.75 16 20 C -0.13 -1.80 5.73 29.39 0.17 -1.63 16 21 C -0.11 -1.56 4.85 28.62 0.14 -1.42 16 22 C 0.11 1.65 3.08 29.76 0.09 1.74 16 23 H 0.03 0.67 7.48 -2.39 -0.02 0.66 16 24 O -0.59 -9.16 13.22 -148.98 -1.97 -11.13 16 25 C -0.15 -1.59 5.42 30.20 0.16 -1.42 16 26 C 0.13 1.90 6.09 86.47 0.53 2.43 16 27 C -0.04 -1.28 9.69 22.25 0.22 -1.07 16 28 C -0.20 -8.03 9.99 22.39 0.22 -7.81 16 29 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.12 5.00 5.64 -2.91 -0.02 4.98 16 31 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 33 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 34 H 0.41 7.96 6.08 -92.71 -0.56 7.39 16 35 H 0.11 0.87 8.07 -2.39 -0.02 0.85 16 36 H 0.08 0.99 6.23 -2.39 -0.01 0.98 16 37 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 0.90 7.36 -2.39 -0.02 0.88 16 40 H 0.06 0.97 8.06 -2.39 -0.02 0.95 16 41 H 0.39 3.08 8.95 -74.06 -0.66 2.41 16 42 H 0.10 0.74 7.90 -2.39 -0.02 0.72 16 43 H 0.09 0.73 7.32 -2.39 -0.02 0.71 16 44 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.07 1.38 6.95 -2.39 -0.02 1.36 16 46 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 47 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -75.14 378.84 0.91 -74.24 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -0.22 Total: 30.65 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 5.52 Total: -16.76 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -4.17 Total: -86.57 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -2.25 Total: -45.27 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -75.14 0.91 -74.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477762658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.590 kcal (2) G-P(sol) polarization free energy of solvation -75.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds